IslandPathversion 1.0

IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.02 STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1049	 32.67	0	1057819..1057968	+	49	24213749	-	LA1049	-	hypothetical protein
1050	 32.54	0	1058289..1058414	-	41	24213750	-	LA1050	-	hypothetical protein
1051	 35.81	0	1059114..1059638	+	174	24213751	-	LA1051	-	hypothetical protein
1052	 40.87	+1	1059635..1061014	+	459	24213752	-	LA1052	-	hypothetical protein
1053	 39.90	+1	1061028..1061438	+	136	24213753	-	LA1053	-	hypothetical protein
1054	 36.45	0	1061435..1061755	+	106	24213754	-	LA1054	-	hypothetical protein
1055	 36.53	0	1061862..1062080	+	72	24213755	-	LA1055	-	hypothetical protein
1056	 36.57	0	1062126..1063946	+	606	24213756	-	LA1056	-	hypothetical protein
1057	 40.03	+1	1063943..1064554	+	203	24213757	-	LA1057	-	hypothetical protein
1058	 32.15	0	1064572..1064910	+	112	24213758	-	LA1058	-	hypothetical protein
1059	 37.97	0	1064907..1065725	+	272	24213759	-	LA1059	-	hypothetical protein
1060	 41.32	+1	1065692..1066405	+	237	24213760	-	LA1060	-	bacteriophage protein-like protein
1061	 39.42	0	1066402..1066746	+	114	24213761	-	LA1061	-	hypothetical protein
1062	 40.23	+1	1066743..1067960	+	405	24213762	-	LA1062	-	hypothetical protein
1063	 38.77	0	1067957..1068931	+	324	24213763	-	LA1063	-	hypothetical protein
1064	 35.51	0	1068928..1069203	+	91	24213764	-	LA1064	-	hypothetical protein
1065	 43.29	+1	1069200..1070093	+	297	24213765	-	LA1065	-	hypothetical protein
1066	 42.17	+1	1070235..1071128	+	297	24213766	-	LA1066	-	hypothetical protein
1067	 34.56	0	1071128..1071859	+	243	24213767	-	LA1067	-	hypothetical protein
1068	 29.46	-1	1071893..1072021	+	42	24213768	-	LA1068	-	hypothetical protein
1069	 29.28	-1	1072862..1073725	-	287	24213769	-	LA1069	-	alpha/beta fold family hydrolase/acetyltransferase
1070	 32.79	0	1073851..1074951	-	366	24213770	cyaA5	LA1070	-	adenylate cyclase
1071	 30.73	0	1074957..1075148	-	63	24213771	-	LA1071	-	hypothetical protein
1072	 30.66	0	1075813..1076898	-	361	24213772	-	LA1072	-	hypothetical protein
1073	 30.11	-1	1077010..1077537	-	175	24213773	-	LA1073	-	hypothetical protein
1074	 34.70	0	1078268..1079218	-	316	24213774	-	LA1074	-	fumarylacetoacetate hydrolase family protein
1075	 27.59	-1	1079709..1079882	+	57	24213775	-	LA1075	-	hypothetical protein
1076	 35.90	0	1080620..1080970	-	116	24213776	-	LA1076	-	hypothetical protein
1077	 23.73	-2	1081091..1081267	+	58	24213777	-	LA1077	-	hypothetical protein
1078	 41.47	+1	1081517..1081774	+	85	24213778	-	LA1078	-	hypothetical protein
1079	 33.88	0	1081969..1082700	-	243	24213779	-	LA1079	-	hypothetical protein
1080	 37.25	0	1082697..1085351	-	884	24213780	pepN	LA1080	-	aminopeptidase N
1081	 41.53	+1	1085491..1086795	-	434	24213781	-	LA1081	-	MFS permease
1082	 36.79	0	1086749..1087327	-	192	24213782	-	LA1082	-	MutT/nudix family protein
1083	 26.02	-1	1087393..1087515	-	40	24213783	-	LA1083	-	hypothetical protein
1084	 25.00	-2	1087551..1087658	-	35	24213784	-	LA1084	-	hypothetical protein
1085	 37.98	0	1087834..1089858	+	674	24213785	pcrA2	LA1085	-	ATP-dependent DNA helicase pcrA
1086	 34.41	0	1089861..1090511	+	216	24213786	-	LA1086	-	hypothetical protein
1087	 36.43	0	1090529..1092721	+	730	24213787	-	LA1087	-	hypothetical protein
1088	 32.84	0	1092691..1093095	+	134	24213788	-	LA1088	-	hypothetical protein
1089	 21.97	-2	1093405..1093536	+	43	24213789	-	LA1089	-	hypothetical protein
1090	 31.32	0	1093623..1094069	+	148	24213790	-	LA1090	-	hypothetical protein
1091	 34.76	0	1094187..1094537	-	116	24213791	-	LA1091	-	ArsR family transcriptional regulator
1092	 35.40	0	1094570..1095052	+	160	24213792	-	LA1092	-	hypothetical protein
1093	 35.46	0	1095184..1095606	-	140	24213793	-	LA1093	-	hypothetical protein
1094	 38.68	0	1096219..1096461	+	80	24213794	-	LA1094	-	aminoglycoside N6'-acetyltransferase
1095	 37.84	0	1096458..1096679	+	73	24213795	-	LA1095	-	acetyltransferase
1096	 35.96	0	1097194..1098489	-	431	24213796	lpxB	LA1096	-	Lipid-A-disaccharide synthase
1097	 37.10	0	1098443..1099291	-	282	24213797	-	LA1097	-	hypothetical protein
1098	 41.15	+1	1099304..1099546	-	80	24213798	-	LA1098	-	hypothetical protein
1099	 37.87	0	1099585..1101018	-	477	24213799	-	LA1099	-	hypothetical protein
1100	 37.08	0	1101040..1102641	-	533	24213800	-	LA1100	-	outer membrane efflux protein
1101	 46.00	+2	1102904..1103779	-	291	24213801	sucD	LA1101	-	succinyl-CoA synthetase alpha subunit
1102	 43.65	+1	1103792..1104964	-	390	24213802	sucC	LA1102	-	succinyl-CoA synthetase beta chain
1103	 35.97	0	1106173..1106817	-	214	24213803	-	LA1103	-	hypothetical protein
1104	 33.97	0	1106786..1107415	-	209	24213804	dnaJ3	LA1104	-	chaperone DnaJ
1105	 39.70	0	1107515..1108864	+	449	24213805	-	LA1105	-	epimerase
1106	 35.97	0	1108861..1110756	+	631	24213806	-	LA1106	-	hypothetical protein
1107	 35.48	0	1110788..1111624	+	278	24213807	-	LA1107	-	hypothetical protein
1108	 30.63	0	1112496..1112606	+	36	24213808	-	LA1108	-	hypothetical protein
1109	 27.60	-1	1112748..1112939	-	63	24213809	-	LA1109	-	hypothetical protein
1110	 39.83	0	1113143..1114420	-	425	24213810	purA	LA1110	-	adenylosuccinate synthetase
1111	 34.98	0	1114458..1115492	-	344	24213811	hisS2	LA1111	-	histidyl-tRNA synthetase
1112	 36.72	0	1115799..1117808	+	669	24213812	gpsA1	LA1112	-	glycerol-3-phosphate dehydrogenase
1113	 26.81	-1	1118233..1118370	-	45	24213813	-	LA1113	-	hypothetical protein
1114	 34.22	0	1118414..1119547	+	377	24213814	-	LA1114	-	Rieske 2Fe-2S family protein
1115	 33.95	0	1119730..1119891	+	53	24213815	-	LA1115	-	hypothetical protein
1116	 29.37	-1	1120857..1120982	+	41	24213816	-	LA1116	-	hypothetical protein
1117	 40.17	+1	1121251..1122201	-	316	24213817	-	LA1118	-	outermembrane protein
1118	 41.27	+1	1122189..1122314	+	41	24213818	-	LA1117	-	hypothetical protein
1119	 38.58	0	1122707..1123144	+	145	24213819	-	LA1119	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1120	 27.93	-1	1123952..1124062	-	36	24213820	-	LA1120	-	hypothetical protein
1121	 36.59	0	1124315..1124836	+	173	24213821	-	LA1121	-	hypothetical protein
1122	 35.49	0	1125009..1126028	-	339	24213822	-	LA1122	-	outermembrane protein
1123	 34.64	0	1126519..1127358	-	279	24213823	-	LA1123	-	hypothetical protein
1124	 34.43	0	1127289..1129019	-	576	24213824	cutE	LA1124	-	apolipoprotein N-acyltransferase
1125	 33.24	0	1129025..1130059	-	344	24213825	-	LA1125	-	outermembrane protein
1126	 36.67	0	1130146..1131165	+	339	24213826	-	LA1126	-	phosphoglycerate dehydrogenase
1127	 32.67	0	1131884..1132033	-	49	24213827	-	LA1127	-	hypothetical protein
1128	 32.12	0	1132502..1133404	-	300	24213828	-	LA1128	-	hypothetical protein
1129	 33.19	0	1133382..1134068	-	228	24213829	-	LA1129	-	DNA alkylation repair enzyme-like protein
1130	 35.21	0	1134242..1135942	-	566	24213830	fadE1	LA1130	-	Acyl-CoA dehydrogenase
1131	 37.99	0	1136113..1136778	-	221	24213831	-	LA1131	-	protein-L-isoaspartate O-methyltransferase
1132	 35.80	0	1136957..1137199	-	80	24213832	-	LA1132	-	hypothetical protein
1133	 33.80	0	1137299..1137730	+	143	24213833	-	LA1133	-	hypothetical protein
1134	 32.70	0	1138125..1138283	-	52	24213834	-	LA1134	-	hypothetical protein
1135	 34.52	0	1139061..1140236	+	391	24213835	-	LA1135	-	hypothetical protein
1136	 36.30	0	1140695..1141468	+	257	24213836	-	LA1136	-	hypothetical protein
1137	 37.63	0	1141490..1142605	+	371	24213837	-	LA1137	-	transcriptional regulator
1138	 39.50	0	1142614..1143927	+	437	24213838	-	LA1138	-	hypothetical protein
1139	 37.45	0	1143918..1144670	+	250	24213839	pgsA1	LA1139	-	phosphatidylglycerophosphate synthase
1140	 39.17	0	1144645..1145655	+	336	24213840	trpD	LA1140	-	anthranilate phosphoribosyltransferase
1141	 38.53	0	1145711..1146037	+	108	24213841	-	LA1141	-	hypothetical protein
1142	 39.42	0	1146815..1148719	+	634	24213842	secD	LA1142	-	preprotein translocase subunit SecD
1143	 36.02	0	1148694..1149662	+	322	24213843	secF	LA1143	-	preprotein translocase subunit SecF
1144	 35.19	0	1149662..1151062	+	466	24213844	ribD1	LA1144	-	riboflavin biosynthesis protein D
1145	 38.19	0	1151032..1151649	+	205	24213845	ribE	LA1145	-	riboflavin synthase subunit alpha
1146	 34.19	0	1151808..1151924	+	38	24213846	-	LA1146	-	hypothetical protein
1147	 40.22	+1	1153293..1154498	+	401	24213847	ribA	LA1147	-	riboflavin biosynthesis protein A
1148	 40.95	+1	1154747..1154851	+	34	24213848	-	LA1148	-	hypothetical protein
35.02	MEAN

4.84	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.