IslandPath Analysis: Leptospira interrogans serovar Lai str. 56601



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.02   STD DEV: 4.84
Leptospira interrogans serovar Lai str. 56601 chromosome I, complete sequence - 1..4332241
4360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1000	 31.51	0	1007107..1007655	-	182	24213700	-	LA1000	-	hypothetical protein
1001	 28.57	-1	1007753..1008151	-	132	24213701	-	LA1001	-	virulence associated protein C
1002	 36.80	0	1008151..1008381	-	76	24213702	-	LA1002	-	virulence associated protein B
1003	 31.27	0	1008629..1009306	-	225	24213703	-	LA1003	-	hypothetical protein
1004	 30.87	0	1009538..1010227	-	229	24213704	-	LA1004	-	hypothetical protein
1005	 29.85	-1	1010453..1010911	-	152	24213705	-	LA1005	-	hypothetical protein
1006	 36.87	0	1011326..1012399	+	357	24213706	-	LA1006	-	transposase
1007	 33.51	0	1013067..1013636	+	189	24213707	-	LA1007	-	glutathione peroxidase
1008	 35.34	0	1014332..1015228	+	298	24213708	-	LA1008	-	hypothetical protein
1009	 39.39	0	1015265..1018021	+	918	24213709	-	LA1009	-	penicillin-binding protein 1A
1010	 33.33	0	1018011..1019570	+	519	24213710	-	LA1010	-	outermembrane protein
1011	 25.40	-1	1020000..1020125	-	41	24213711	-	LA1012	-	hypothetical protein
1012	 27.35	-1	1020057..1020173	+	38	24213712	-	LA1011	-	hypothetical protein
1013	 36.92	0	1020602..1021606	+	334	24213713	-	LA1013	-	hypothetical protein
1014	 33.10	0	1021780..1022205	-	141	24213714	-	LA1014	-	hypothetical protein
1015	 40.45	+1	1022455..1023072	-	205	24213715	-	LA1015	-	outermembrane protein
1016	 41.82	+1	1023077..1025245	-	722	24213716	-	LA1016	-	hypothetical protein
1017	 41.61	+1	1025242..1026075	-	277	24213717	-	LA1017	-	TPR repeat-containing protein
1018	 39.68	0	1026388..1026576	-	62	24213718	-	LA1018	-	hypothetical protein
1019	 41.79	+1	1026573..1027364	-	263	24213719	-	LA1019	-	NifU-like protein
1020	 38.24	0	1027423..1027626	-	67	24213720	rpmE	LA1020	-	50S ribosomal protein L31
1021	 42.86	+1	1027647..1029095	-	482	24213721	rho	LA1021	-	transcription termination factor Rho
1022	 36.77	0	1029243..1030406	-	387	24213722	-	LA1022	-	transcriptional regulator Fis
1023	 31.99	0	1030904..1034392	+	1162	24213723	-	LA1023	-	hypothetical protein
1024	 31.38	0	1034401..1035426	+	341	24213724	-	LA1024	-	hypothetical protein
1025	 37.40	0	1035489..1035611	+	40	24213725	-	LA1025	-	hypothetical protein
1026	 34.85	0	1035594..1035725	-	43	24213726	-	LA1026	-	hypothetical protein
1027	 33.84	0	1036190..1037983	-	597	24213727	sph1	LA1027	-	sphingomyelinase C precursor
1028	 29.91	-1	1038600..1038716	+	38	24213728	-	LA1028	-	hypothetical protein
1029	 35.47	0	1038898..1040769	-	623	24213729	sph2	LA1029	-	sphingomyelinase C precursor
1030	 36.75	0	1041419..1042267	-	282	24213730	-	LA1030	-	TPR repeat-containing protein
1031	 36.11	0	1042379..1042558	+	59	24213731	-	LA1031	-	hypothetical protein
1032	 40.22	+1	1042560..1043387	-	275	24213732	ech3	LA1032	-	enoyl-CoA hydratase
1033	 34.20	0	1043462..1043692	+	76	24213733	-	LA1033	-	hypothetical protein
1034	 27.78	-1	1043700..1043843	-	47	24213734	-	LA1034	-	hypothetical protein
1035	 40.14	+1	1043959..1044105	-	48	24213735	-	LA1035	-	hypothetical protein
1036	 37.39	0	1045339..1046718	-	459	24213736	-	LA1036	-	two-component hybrid sensor and regulator
1037	 32.16	0	1047045..1047215	-	56	24213737	-	LA1037	-	hypothetical protein
1038	 39.33	0	1047269..1047568	+	99	24213738	-	LA1038	-	hypothetical protein
1039	 34.52	0	1047636..1048310	-	224	24213739	-	LA1039	-	hypothetical protein
1040	 36.10	0	1048414..1049496	-	360	24213740	-	LA1040	-	hypothetical protein
1041	 24.56	-2	1049493..1049606	-	37	24213741	-	LA1041	-	hypothetical protein
1042	 33.33	0	1049817..1049924	-	35	24213742	-	LA1042	-	hypothetical protein
1043	 39.23	0	1050234..1051352	-	372	24213743	-	LA1043	-	peptidase, M23/M37 family protein
1044	 43.80	+1	1051406..1051816	-	136	24213744	-	LA1044	-	hypothetical protein
1045	 41.38	+1	1051918..1054401	-	827	24213745	-	LA1045	-	penicillin-binding protein 1A
1046	 37.98	0	1054408..1055484	-	358	24213746	-	LA1046	-	hypothetical protein
1047	 41.06	+1	1055560..1056828	+	422	24213747	lysA	LA1047	-	diaminopimelate decarboxylase
1048	 36.82	0	1056806..1057522	+	238	24213748	ygbP	LA1048	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
1049	 32.67	0	1057819..1057968	+	49	24213749	-	LA1049	-	hypothetical protein
1050	 32.54	0	1058289..1058414	-	41	24213750	-	LA1050	-	hypothetical protein
1051	 35.81	0	1059114..1059638	+	174	24213751	-	LA1051	-	hypothetical protein
1052	 40.87	+1	1059635..1061014	+	459	24213752	-	LA1052	-	hypothetical protein
1053	 39.90	+1	1061028..1061438	+	136	24213753	-	LA1053	-	hypothetical protein
1054	 36.45	0	1061435..1061755	+	106	24213754	-	LA1054	-	hypothetical protein
1055	 36.53	0	1061862..1062080	+	72	24213755	-	LA1055	-	hypothetical protein
1056	 36.57	0	1062126..1063946	+	606	24213756	-	LA1056	-	hypothetical protein
1057	 40.03	+1	1063943..1064554	+	203	24213757	-	LA1057	-	hypothetical protein
1058	 32.15	0	1064572..1064910	+	112	24213758	-	LA1058	-	hypothetical protein
1059	 37.97	0	1064907..1065725	+	272	24213759	-	LA1059	-	hypothetical protein
1060	 41.32	+1	1065692..1066405	+	237	24213760	-	LA1060	-	bacteriophage protein-like protein
1061	 39.42	0	1066402..1066746	+	114	24213761	-	LA1061	-	hypothetical protein
1062	 40.23	+1	1066743..1067960	+	405	24213762	-	LA1062	-	hypothetical protein
1063	 38.77	0	1067957..1068931	+	324	24213763	-	LA1063	-	hypothetical protein
1064	 35.51	0	1068928..1069203	+	91	24213764	-	LA1064	-	hypothetical protein
1065	 43.29	+1	1069200..1070093	+	297	24213765	-	LA1065	-	hypothetical protein
1066	 42.17	+1	1070235..1071128	+	297	24213766	-	LA1066	-	hypothetical protein
1067	 34.56	0	1071128..1071859	+	243	24213767	-	LA1067	-	hypothetical protein
1068	 29.46	-1	1071893..1072021	+	42	24213768	-	LA1068	-	hypothetical protein
1069	 29.28	-1	1072862..1073725	-	287	24213769	-	LA1069	-	alpha/beta fold family hydrolase/acetyltransferase
1070	 32.79	0	1073851..1074951	-	366	24213770	cyaA5	LA1070	-	adenylate cyclase
1071	 30.73	0	1074957..1075148	-	63	24213771	-	LA1071	-	hypothetical protein
1072	 30.66	0	1075813..1076898	-	361	24213772	-	LA1072	-	hypothetical protein
1073	 30.11	-1	1077010..1077537	-	175	24213773	-	LA1073	-	hypothetical protein
1074	 34.70	0	1078268..1079218	-	316	24213774	-	LA1074	-	fumarylacetoacetate hydrolase family protein
1075	 27.59	-1	1079709..1079882	+	57	24213775	-	LA1075	-	hypothetical protein
1076	 35.90	0	1080620..1080970	-	116	24213776	-	LA1076	-	hypothetical protein
1077	 23.73	-2	1081091..1081267	+	58	24213777	-	LA1077	-	hypothetical protein
1078	 41.47	+1	1081517..1081774	+	85	24213778	-	LA1078	-	hypothetical protein
1079	 33.88	0	1081969..1082700	-	243	24213779	-	LA1079	-	hypothetical protein
1080	 37.25	0	1082697..1085351	-	884	24213780	pepN	LA1080	-	aminopeptidase N
1081	 41.53	+1	1085491..1086795	-	434	24213781	-	LA1081	-	MFS permease
1082	 36.79	0	1086749..1087327	-	192	24213782	-	LA1082	-	MutT/nudix family protein
1083	 26.02	-1	1087393..1087515	-	40	24213783	-	LA1083	-	hypothetical protein
1084	 25.00	-2	1087551..1087658	-	35	24213784	-	LA1084	-	hypothetical protein
1085	 37.98	0	1087834..1089858	+	674	24213785	pcrA2	LA1085	-	ATP-dependent DNA helicase pcrA
1086	 34.41	0	1089861..1090511	+	216	24213786	-	LA1086	-	hypothetical protein
1087	 36.43	0	1090529..1092721	+	730	24213787	-	LA1087	-	hypothetical protein
1088	 32.84	0	1092691..1093095	+	134	24213788	-	LA1088	-	hypothetical protein
1089	 21.97	-2	1093405..1093536	+	43	24213789	-	LA1089	-	hypothetical protein
1090	 31.32	0	1093623..1094069	+	148	24213790	-	LA1090	-	hypothetical protein
1091	 34.76	0	1094187..1094537	-	116	24213791	-	LA1091	-	ArsR family transcriptional regulator
1092	 35.40	0	1094570..1095052	+	160	24213792	-	LA1092	-	hypothetical protein
1093	 35.46	0	1095184..1095606	-	140	24213793	-	LA1093	-	hypothetical protein
1094	 38.68	0	1096219..1096461	+	80	24213794	-	LA1094	-	aminoglycoside N6'-acetyltransferase
1095	 37.84	0	1096458..1096679	+	73	24213795	-	LA1095	-	acetyltransferase
1096	 35.96	0	1097194..1098489	-	431	24213796	lpxB	LA1096	-	Lipid-A-disaccharide synthase
1097	 37.10	0	1098443..1099291	-	282	24213797	-	LA1097	-	hypothetical protein
1098	 41.15	+1	1099304..1099546	-	80	24213798	-	LA1098	-	hypothetical protein
1099	 37.87	0	1099585..1101018	-	477	24213799	-	LA1099	-	hypothetical protein
35.02	MEAN

4.84	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.