IslandPathversion 1.0

IslandPath Analysis: Leptospira borgpetersenii serovar Hardjo-bovis L550



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.96 STD DEV: 2.80
Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 2, complete sequence - 1..317336
242 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
46	 41.11	0	52375..54186	+	603	116329602	-	LBL_4049	-	heat shock protein 90
47	 39.51	0	54205..54771	+	188	116329603	-	LBL_4050	-	hypothetical protein
48	 39.32	0	54752..55252	-	166	116329604	-	LBL_4051	-	hypothetical protein
49	 37.65	-1	55739..55900	+	53	116329605	-	LBL_4052	-	lipoprotein
50	 41.11	0	55962..56951	+	329	116329606	-	LBL_4053	-	hypothetical protein
51	 37.43	-1	57603..57944	-	113	116329607	-	LBL_4054	-	antagonist of anti-sigma factor
52	 42.09	0	59409..59876	+	155	116329608	-	LBL_4056	-	hypothetical protein
53	 43.63	0	60259..60909	+	216	116329609	-	LBL_4057	-	hypothetical protein
54	 42.80	0	60964..61776	-	270	116329610	-	LBL_4058	-	Fatty-acid desaturase
55	 41.01	0	63279..63929	+	216	116329611	-	LBL_4059	-	dinucleotide-binding protein
56	 39.96	0	64305..64832	+	175	116329612	-	LBL_4060	-	hypothetical protein
57	 45.43	+1	65025..65975	-	316	116329613	-	LBL_4061	-	periplasmic protein kinase involved in LAO amino acid transport and metabolism
58	 45.80	+1	65996..68008	-	670	116329614	meaA	LBL_4062	-	methylmalonyl-CoA mutase
59	 39.52	0	68118..69458	+	446	116329615	-	LBL_4063	-	hypothetical protein
60	 39.78	0	69523..70251	+	242	116329616	-	LBL_4064	-	hypothetical protein
61	 33.60	-2	71147..72622	+	491	116329617	-	LBL_4065	-	hypothetical protein
62	 38.97	0	73089..73496	+	135	116329618	-	LBL_4066	-	hypothetical protein
63	 40.14	0	73627..74331	+	234	116329619	-	LBL_4067	-	LipL45-related lipoprotein
64	 39.30	0	74871..76478	+	535	116329620	-	LBL_4068	-	GGDEF family protein
65	 36.71	-1	78661..79074	+	137	116329621	-	LBL_4070	-	hypothetical protein
66	 39.09	0	79121..80215	+	364	116329622	-	LBL_4071	-	transposase IS1533
67	 36.35	-1	81214..81909	-	231	116329623	-	LBL_4072	-	AcrR family transcriptional regulator
68	 33.08	-2	81958..83160	-	400	116329624	-	LBL_4073	-	AraC family transcription regulator
69	 37.81	-1	85508..86647	-	379	116329625	-	LBL_4076	-	AraC family transcription regulator
70	 35.42	-1	92525..93529	-	334	116329626	-	LBL_4083	-	hypothetical protein
71	 38.90	0	93526..94980	-	484	116329627	-	LBL_4084	-	hypothetical protein
72	 40.40	0	94982..96466	-	494	116329628	-	LBL_4085	-	regulator of sigma subunit
73	 40.70	0	102194..103198	+	334	116329629	-	LBL_4092	-	hypothetical protein
74	 45.15	+1	103605..105161	+	518	116329630	-	LBL_4093	-	FAD-dependent dehydrogenase
75	 39.58	0	105305..105544	-	79	116329631	-	LBL_4094	-	hypothetical protein
76	 42.97	0	110655..111401	-	248	116329632	-	LBL_4098	-	hypothetical protein
77	 39.66	0	111446..112930	-	494	116329633	-	LBL_4099	-	polysaccharide deacetylase
78	 41.84	0	113004..113567	-	187	116329634	-	LBL_4100	-	TPR repeat-containing lipoprotein
79	 40.70	0	113590..114105	-	171	116329635	-	LBL_4101	-	hypothetical protein
80	 41.57	0	115011..115787	+	258	116329636	-	LBL_4102	-	sugar phosphatase
81	 37.61	-1	116302..116745	+	147	116329637	-	LBL_4103	-	hypothetical protein
82	 40.90	0	116807..117784	+	325	116329638	-	LBL_4104	-	ArsR family transcriptional regulator
83	 46.15	+1	117787..119097	+	436	116329639	sahH	LBL_4105	-	S-adenosyl-L-homocysteine hydrolase
84	 44.00	+1	119173..119472	+	99	116329640	-	LBL_4106	-	hypothetical protein
85	 45.35	+1	119519..123262	+	1247	116329641	metH	LBL_4107	-	B12-dependent methionine synthase
86	 36.97	-1	123312..123641	+	109	116329642	-	LBL_4108	-	hypothetical protein
87	 42.56	0	123971..124891	-	306	116329643	-	LBL_4109	-	hypothetical protein
88	 44.27	+1	125004..126338	+	444	116329644	pfkA	LBL_4110	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
89	 40.88	0	126453..128201	-	582	116329645	-	LBL_4111	-	Serine phosphatase RsbU, regulator of sigma subunit
90	 44.29	+1	128365..129240	-	291	116329646	argB	LBL_4112	-	acetylglutamate kinase
91	 42.46	0	129320..130075	+	251	116329647	-	LBL_4113	-	Short chain dehydrogenase
92	 40.36	0	130205..131926	-	573	116329648	-	LBL_4114	-	protease
93	 40.83	0	131927..132406	-	159	116329649	-	LBL_4115	-	bacterioferritin comigratory protein
94	 42.90	0	133354..133698	+	114	116329650	-	LBL_4116	-	hypothetical protein
95	 43.87	+1	133765..134865	+	366	116329651	-	LBL_4117	-	hypothetical protein
96	 39.09	0	136412..137506	-	364	116329652	-	LBL_4119	-	transposase IS1533
97	 37.35	-1	138643..139539	-	298	116329653	-	LBL_4120	-	XerD related protein
98	 40.37	0	139655..140194	-	179	116329654	aroK	LBL_4121	-	shikimate kinase
99	 40.02	0	140191..141042	-	283	116329655	-	LBL_4122	-	Signal transduction protein
100	 42.80	0	141049..141555	-	168	116329656	-	LBL_4123	-	chemotaxis protein
101	 42.79	0	141730..142956	+	408	116329657	traB	LBL_4124	-	pheromone shutdown protein
102	 38.74	0	142953..145079	+	708	116329658	-	LBL_4125	-	Signal transduction protein
103	 40.70	0	145080..145649	+	189	116329659	-	LBL_4126	-	lipoprotein
104	 38.75	0	145737..146714	-	325	116329660	-	LBL_4127	-	hypothetical protein
105	 37.01	-1	146766..147173	+	135	116329661	-	LBL_4128	-	hypothetical protein
106	 41.01	0	147161..148579	+	472	116329662	-	LBL_4129	-	nucleotide glucose-1-phosphate uridylyl transferase
107	 36.58	-1	148668..150023	+	451	116329663	-	LBL_4130	-	hypothetical protein
108	 43.53	0	150513..152915	-	800	116329664	-	LBL_4131	-	cysteine protease
109	 38.36	0	152928..153365	-	145	116329665	-	LBL_4132	-	hypothetical protein
110	 45.23	+1	153559..154197	-	212	116329666	tonB	LBL_4133	-	TonB protein
111	 42.47	0	154216..154620	-	134	116329667	exbD	LBL_4134	-	ExbD-related biopolymer transport protein
112	 40.33	0	154643..155257	-	204	116329668	exbB	LBL_4135	-	TolQ-like transport protein
113	 40.24	0	155354..155845	-	163	116329669	-	LBL_4136	-	hypothetical protein
114	 43.16	0	155845..158448	-	867	116329670	-	LBL_4137	-	TonB dependent receptor
115	 37.75	-1	158459..158866	-	135	116329671	-	LBL_4138	-	hypothetical protein
116	 41.39	0	158868..159401	-	177	116329672	-	LBL_4139	-	hypothetical protein
117	 38.62	0	159373..159750	-	125	116329673	-	LBL_4140	-	hypothetical protein
118	 43.97	+1	160306..161358	-	350	116329674	-	LBL_4141	-	arginine/ornithine transport system ATPase
119	 48.02	+2	161366..163564	-	732	116329675	-	LBL_4142	-	methylmalonyl-CoA mutase
120	 45.03	+1	163561..165441	-	626	116329676	sbm	LBL_4143	-	methylmalonyl-COA mutase
121	 39.29	0	165532..166521	-	329	116329677	-	LBL_4144	-	permease
122	 40.00	0	166610..167239	+	209	116329678	-	LBL_4145	-	hypothetical protein
123	 42.67	0	167298..168197	+	299	116329679	-	LBL_4146	-	hypothetical protein
124	 40.59	0	168197..169354	+	385	116329680	csdB	LBL_4147	-	selenocysteine lyase
125	 38.96	0	172113..173213	-	366	116329681	-	LBL_4150	-	transposase IS1533
126	 40.00	0	174765..176114	+	449	116329682	-	LBL_4152	-	hypothetical protein
127	 41.38	0	176097..178196	-	699	116329683	-	LBL_4153	-	hypothetical protein
128	 44.88	+1	178304..178762	-	152	116329684	dksA	LBL_4154	-	DnaK suppressor protein
129	 36.97	-1	178780..178944	-	54	116329685	-	LBL_4155	-	ribosomal protein L33
130	 39.18	0	180113..181207	+	364	116329686	-	LBL_4156	-	transposase IS1533
131	 37.55	-1	182166..182900	-	244	116329687	ubiE	LBL_4158	-	methylase involved in ubiquinone/menaquinone biosynthesis
132	 38.76	0	183302..183817	+	171	116329688	-	LBL_4159	-	TolQ-like transport protein
133	 37.17	-1	183831..184247	+	138	116329689	-	LBL_4160	-	ExbD-related biopolymer transport protein
134	 42.32	0	184244..184588	-	114	116329690	-	LBL_4161	-	pyrophosphatase
135	 39.03	0	184585..185655	-	356	116329691	-	LBL_4162	-	hypothetical protein
136	 40.56	0	185665..187062	-	465	116329692	-	LBL_4163	-	DltB-related membrane protein
137	 40.31	0	187059..188219	-	386	116329693	-	LBL_4164	-	hypothetical protein
138	 40.25	0	188233..189648	-	471	116329694	-	LBL_4165	-	DltB-related membrane protein
139	 38.61	0	189720..191102	-	460	116329695	-	LBL_4166	-	hypothetical protein
140	 39.30	0	191323..191925	-	200	116329696	-	LBL_4167	-	hypothetical protein
141	 42.04	0	191936..193072	-	378	116329697	-	LBL_4168	-	glycosyltransferase
142	 37.88	-1	193047..194498	-	483	116329698	-	LBL_4169	-	hypothetical protein
143	 39.66	0	194650..195693	+	347	116329699	queA	LBL_4170	-	S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuosine synthetase)
144	 43.19	0	195791..197413	+	540	116329700	-	LBL_4171	-	ATP-dependent protease
145	 40.93	0	197691..199073	+	460	116329701	-	LBL_4172	-	hypothetical protein
40.96	MEAN

2.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.