IslandPathversion 1.0

IslandPath Analysis: Leptospira borgpetersenii serovar Hardjo-bovis L550



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.96 STD DEV: 2.80
Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 2, complete sequence - 1..317336
242 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
135	 39.03	0	184585..185655	-	356	116329691	-	LBL_4162	-	hypothetical protein
136	 40.56	0	185665..187062	-	465	116329692	-	LBL_4163	-	DltB-related membrane protein
137	 40.31	0	187059..188219	-	386	116329693	-	LBL_4164	-	hypothetical protein
138	 40.25	0	188233..189648	-	471	116329694	-	LBL_4165	-	DltB-related membrane protein
139	 38.61	0	189720..191102	-	460	116329695	-	LBL_4166	-	hypothetical protein
140	 39.30	0	191323..191925	-	200	116329696	-	LBL_4167	-	hypothetical protein
141	 42.04	0	191936..193072	-	378	116329697	-	LBL_4168	-	glycosyltransferase
142	 37.88	-1	193047..194498	-	483	116329698	-	LBL_4169	-	hypothetical protein
143	 39.66	0	194650..195693	+	347	116329699	queA	LBL_4170	-	S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuosine synthetase)
144	 43.19	0	195791..197413	+	540	116329700	-	LBL_4171	-	ATP-dependent protease
145	 40.93	0	197691..199073	+	460	116329701	-	LBL_4172	-	hypothetical protein
146	 39.54	0	199194..199499	+	101	116329702	-	LBL_4173	-	hypothetical protein
147	 39.68	0	200169..200909	+	246	116329703	-	LBL_4174	-	lipoprotein
148	 36.87	-1	200922..201656	-	244	116329704	-	LBL_4175	-	lipoprotein
149	 42.30	0	201938..202528	+	196	116329705	-	LBL_4176	-	lipoprotein
150	 42.57	0	202542..203234	+	230	116329706	-	LBL_4177	-	lipoprotein
151	 41.60	0	203239..205332	+	697	116329707	-	LBL_4178	-	TonB-dependant outer membrane receptor
152	 42.36	0	205733..206929	-	398	116329708	-	LBL_4179	-	permease
153	 39.97	0	206931..207608	-	225	116329709	-	LBL_4180	-	Heme oxygenase
154	 39.17	0	208119..209693	+	524	116329710	-	LBL_4181	-	hypothetical protein
155	 38.63	0	209693..210937	+	414	116329711	-	LBL_4182	-	hypothetical protein
156	 39.77	0	211658..213241	-	527	116329712	-	LBL_4183	-	trypsin-like serine protease
157	 41.95	0	213256..214764	-	502	116329713	-	LBL_4184	-	trypsin-like serine protease
158	 43.26	0	214795..215328	-	177	116329714	-	LBL_4185	-	adenine phosphoribosyltransferase
159	 44.14	+1	215528..216415	-	295	116329715	htpX	LBL_4186	-	heat shock protein HtpX
160	 44.44	+1	216647..218257	-	536	116329716	-	LBL_4187	-	permease
161	 41.82	0	218254..218736	-	160	116329717	-	LBL_4188	-	hypothetical protein
162	 43.00	0	218729..220621	-	630	116329718	-	LBL_4189	-	nucleoside-diphosphate sugar epimerase
163	 41.89	0	220768..221223	+	151	116329719	-	LBL_4190	-	hypothetical protein
164	 42.52	0	221229..223361	-	710	116329720	-	LBL_4191	-	hypothetical protein
165	 43.05	0	224281..225474	+	397	116329721	-	LBL_4192	-	ferredoxin related-protein
166	 43.01	0	225490..225861	+	123	116329722	-	LBL_4193	-	hypothetical protein
167	 42.78	0	225867..226607	+	246	116329723	-	LBL_4194	-	flavodoxin reductase
168	 45.86	+1	226633..227742	+	369	116329724	cbiD	LBL_4195	-	cobalt-precorrin-6A synthase
169	 43.75	0	227746..228417	+	223	116329725	cobH	LBL_4196	-	precorrin-8X methylmutase or isomerase
170	 42.59	0	228414..229655	+	413	116329726	cobL	LBL_4197	-	precorrin-6Y C5,15-methyltransferase (decarboxylating)
171	 42.22	0	229652..230416	+	254	116329727	cobF	LBL_4198	-	precorrin-6A synthase (deacetylating)
172	 41.35	0	230403..231587	+	394	116329728	cbiG	LBL_4199	-	cobalamin biosynthesis protein CbiG
173	 41.02	0	231578..233008	+	476	116329729	cobJ	LBL_4200	-	precorrin-3B C(17)-methyltransferase
174	 42.88	0	233022..233786	+	254	116329730	cobM	LBL_4201	-	precorrin-3B C(17)-methyltransferase
175	 44.88	+1	233783..234319	+	178	116329731	cobA/cobO	LBL_4202	-	Cob(I)yrinic acid a,c-diamide adenosyltransferase
176	 43.84	+1	234319..235698	+	459	116329732	cobB	LBL_4203	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing)
177	 41.22	0	235695..236366	+	223	116329733	cobZ	LBL_4204	-	cobalamin biosynthesis protein
178	 39.44	0	236529..237101	+	190	116329734	cobU	LBL_4205	-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
179	 39.34	0	237098..239695	+	865	116329735	cobQ	LBL_4206	-	bifunctional cobyric acid synthase/cobyric acid decarboxylase and cobyric acid synthase/cobyric acidaminotransferase
180	 38.91	0	239697..240665	+	322	116329736	cobD	LBL_4207	-	cobalamin biosynthesis protein
181	 40.64	0	240662..241441	+	259	116329737	gpmB	LBL_4208	-	phosphoglycerate mutase
182	 42.70	0	243015..244904	-	629	116329738	-	LBL_4210	-	hypothetical protein
183	 38.87	0	246324..247424	-	366	116329739	-	LBL_4212	-	transposase IS1533
184	 39.39	0	247901..248263	+	120	116329740	-	LBL_4213	-	hypothetical protein
185	 34.61	-2	248532..249863	+	443	116329741	-	LBL_4214	-	transposase ISLbp8
186	 37.30	-1	250944..251648	-	234	116329742	-	LBL_4216	-	LipL45-related protein
187	 36.23	-1	251720..252271	-	183	116329743	-	LBL_4217	-	hypothetical protein
188	 40.29	0	252334..253425	-	363	116329744	-	LBL_4218	-	LipL45-related protein
189	 38.70	0	253444..253965	-	173	116329745	-	LBL_4219	-	RNA polymerase sigma subunit
190	 38.66	0	254381..254812	+	143	116329746	-	LBL_4220	-	hypothetical protein
191	 43.26	0	255174..255455	-	93	116329747	-	LBL_4221	-	lipoprotein
192	 42.34	0	255452..257416	-	654	116329748	-	LBL_4222	-	hypothetical protein
193	 44.22	+1	257538..258428	-	296	116329749	-	LBL_4223	-	Alpha/beta hydrolase
194	 43.13	0	259201..260415	-	404	116329750	-	LBL_4224	-	sugar permease (arabinose polymer)
195	 35.72	-1	262481..263275	+	264	116329751	-	LBL_4226	-	hypothetical protein
196	 45.89	+1	263338..264930	+	530	116329752	-	LBL_4227	-	glutamate synthase domain-containing 2
197	 43.15	0	265587..266258	+	223	116329753	-	LBL_4228	-	hypothetical protein
198	 38.45	0	266323..267045	+	240	116329754	-	LBL_4229	-	hypothetical protein
199	 42.74	0	267576..267926	+	116	116329755	-	LBL_4230	-	hypothetical protein
200	 41.77	0	268042..268740	-	232	116329756	-	LBL_4231	-	Short chain dehydrogenase
201	 42.23	0	268756..269508	-	250	116329757	-	LBL_4232	-	aldolase/epimerase
202	 41.76	0	269510..270043	-	177	116329758	-	LBL_4233	-	ARD family protein
203	 41.80	0	270064..270630	-	188	116329759	-	LBL_4234	-	translation elongation factor P
204	 41.60	0	272491..273603	+	370	116329760	kamA	LBL_4236	-	lysine 2,3-aminomutase
205	 38.57	0	273587..274159	+	190	116329761	-	LBL_4237	-	lipoprotein
206	 38.16	-1	274214..274420	+	68	116329762	-	LBL_4238	-	hypothetical protein
207	 40.18	0	274413..275186	+	257	116329763	-	LBL_4239	-	hypothetical protein
208	 44.01	+1	275267..275725	-	152	116329764	-	LBL_4240	-	hypothetical protein
209	 41.91	0	276316..277131	-	271	116329765	pyrF	LBL_4241	-	orotidine-5'-phosphate decarboxylase
210	 45.55	+1	277156..277998	-	280	116329766	speE	LBL_4242	-	spermidine synthase
211	 45.33	+1	278008..278874	-	288	116329767	-	LBL_4243	-	hypothetical protein
212	 42.64	0	278965..279351	-	128	116329768	speD	LBL_4244	-	S-adenosylmethionine decarboxylase proenzyme
213	 38.85	0	280776..281264	-	162	116329769	-	LBL_4245	-	hypothetical protein
214	 43.42	0	281383..282522	+	379	116329770	alr	LBL_4246	-	alanine racemase
215	 37.40	-1	282572..283702	+	376	116329771	-	LBL_4247	-	acyltransferase
216	 41.45	0	283722..284633	+	303	116329772	-	LBL_4248	-	hypothetical protein
217	 37.09	-1	285692..286357	-	221	116329773	-	LBL_4250	-	hypothetical protein
218	 42.10	0	286354..288669	-	771	116329774	-	LBL_4251	-	sensor histidine kinase
219	 43.10	0	288770..289363	+	197	116329775	-	LBL_4252	-	transglycosylase
220	 42.06	0	289596..290294	+	232	116329776	-	LBL_4253	-	AcrR family transcriptional regulator
221	 46.43	+1	290367..292634	-	755	116329777	acnA	LBL_4254	-	aconitate hydratase
222	 40.93	0	292763..293854	-	363	116329778	-	LBL_4255	-	OmpA-family protein
223	 41.14	0	293960..294907	-	315	116329779	-	LBL_4256	-	tRNA synthetase class II (D, K and N)
224	 41.67	0	294955..295290	+	111	116329780	-	LBL_4257	-	hypothetical protein
225	 44.61	+1	295303..295710	-	135	116329781	-	LBL_4258	-	hypothetical protein
226	 42.29	0	295938..296663	+	241	116329782	-	LBL_4259	-	response regulator
227	 37.29	-1	297096..297398	-	100	116329783	phhB	LBL_4260	-	4a-hydroxytetrahydrobiopterin dehydratase
228	 40.34	0	297754..298167	-	137	116329784	-	LBL_4261	-	hypothetical protein
229	 40.50	0	298417..298695	+	92	116329785	-	LBL_4262	-	hypothetical protein
230	 42.71	0	298713..299096	+	127	116329786	-	LBL_4263	-	hypothetical protein
231	 37.60	-1	299093..299350	+	85	116329787	-	LBL_4264	-	hypothetical protein
232	 46.12	+1	302250..303704	-	484	116329788	pykF	LBL_4267	-	pyruvate kinase
233	 40.17	0	303743..305701	-	652	116329789	-	LBL_4268	-	hypothetical protein
234	 43.14	0	305714..306763	-	349	116329790	asd	LBL_4269	-	aspartate-semialdehyde dehydrogenase
40.96	MEAN

2.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.