IslandPathversion 1.0

IslandPath Analysis: Leptospira borgpetersenii serovar Hardjo-bovis L550



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.96 STD DEV: 2.80
Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 2, complete sequence - 1..317336
242 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
103	 40.70	0	145080..145649	+	189	116329659	-	LBL_4126	-	lipoprotein
104	 38.75	0	145737..146714	-	325	116329660	-	LBL_4127	-	hypothetical protein
105	 37.01	-1	146766..147173	+	135	116329661	-	LBL_4128	-	hypothetical protein
106	 41.01	0	147161..148579	+	472	116329662	-	LBL_4129	-	nucleotide glucose-1-phosphate uridylyl transferase
107	 36.58	-1	148668..150023	+	451	116329663	-	LBL_4130	-	hypothetical protein
108	 43.53	0	150513..152915	-	800	116329664	-	LBL_4131	-	cysteine protease
109	 38.36	0	152928..153365	-	145	116329665	-	LBL_4132	-	hypothetical protein
110	 45.23	+1	153559..154197	-	212	116329666	tonB	LBL_4133	-	TonB protein
111	 42.47	0	154216..154620	-	134	116329667	exbD	LBL_4134	-	ExbD-related biopolymer transport protein
112	 40.33	0	154643..155257	-	204	116329668	exbB	LBL_4135	-	TolQ-like transport protein
113	 40.24	0	155354..155845	-	163	116329669	-	LBL_4136	-	hypothetical protein
114	 43.16	0	155845..158448	-	867	116329670	-	LBL_4137	-	TonB dependent receptor
115	 37.75	-1	158459..158866	-	135	116329671	-	LBL_4138	-	hypothetical protein
116	 41.39	0	158868..159401	-	177	116329672	-	LBL_4139	-	hypothetical protein
117	 38.62	0	159373..159750	-	125	116329673	-	LBL_4140	-	hypothetical protein
118	 43.97	+1	160306..161358	-	350	116329674	-	LBL_4141	-	arginine/ornithine transport system ATPase
119	 48.02	+2	161366..163564	-	732	116329675	-	LBL_4142	-	methylmalonyl-CoA mutase
120	 45.03	+1	163561..165441	-	626	116329676	sbm	LBL_4143	-	methylmalonyl-COA mutase
121	 39.29	0	165532..166521	-	329	116329677	-	LBL_4144	-	permease
122	 40.00	0	166610..167239	+	209	116329678	-	LBL_4145	-	hypothetical protein
123	 42.67	0	167298..168197	+	299	116329679	-	LBL_4146	-	hypothetical protein
124	 40.59	0	168197..169354	+	385	116329680	csdB	LBL_4147	-	selenocysteine lyase
125	 38.96	0	172113..173213	-	366	116329681	-	LBL_4150	-	transposase IS1533
126	 40.00	0	174765..176114	+	449	116329682	-	LBL_4152	-	hypothetical protein
127	 41.38	0	176097..178196	-	699	116329683	-	LBL_4153	-	hypothetical protein
128	 44.88	+1	178304..178762	-	152	116329684	dksA	LBL_4154	-	DnaK suppressor protein
129	 36.97	-1	178780..178944	-	54	116329685	-	LBL_4155	-	ribosomal protein L33
130	 39.18	0	180113..181207	+	364	116329686	-	LBL_4156	-	transposase IS1533
131	 37.55	-1	182166..182900	-	244	116329687	ubiE	LBL_4158	-	methylase involved in ubiquinone/menaquinone biosynthesis
132	 38.76	0	183302..183817	+	171	116329688	-	LBL_4159	-	TolQ-like transport protein
133	 37.17	-1	183831..184247	+	138	116329689	-	LBL_4160	-	ExbD-related biopolymer transport protein
134	 42.32	0	184244..184588	-	114	116329690	-	LBL_4161	-	pyrophosphatase
135	 39.03	0	184585..185655	-	356	116329691	-	LBL_4162	-	hypothetical protein
136	 40.56	0	185665..187062	-	465	116329692	-	LBL_4163	-	DltB-related membrane protein
137	 40.31	0	187059..188219	-	386	116329693	-	LBL_4164	-	hypothetical protein
138	 40.25	0	188233..189648	-	471	116329694	-	LBL_4165	-	DltB-related membrane protein
139	 38.61	0	189720..191102	-	460	116329695	-	LBL_4166	-	hypothetical protein
140	 39.30	0	191323..191925	-	200	116329696	-	LBL_4167	-	hypothetical protein
141	 42.04	0	191936..193072	-	378	116329697	-	LBL_4168	-	glycosyltransferase
142	 37.88	-1	193047..194498	-	483	116329698	-	LBL_4169	-	hypothetical protein
143	 39.66	0	194650..195693	+	347	116329699	queA	LBL_4170	-	S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuosine synthetase)
144	 43.19	0	195791..197413	+	540	116329700	-	LBL_4171	-	ATP-dependent protease
145	 40.93	0	197691..199073	+	460	116329701	-	LBL_4172	-	hypothetical protein
146	 39.54	0	199194..199499	+	101	116329702	-	LBL_4173	-	hypothetical protein
147	 39.68	0	200169..200909	+	246	116329703	-	LBL_4174	-	lipoprotein
148	 36.87	-1	200922..201656	-	244	116329704	-	LBL_4175	-	lipoprotein
149	 42.30	0	201938..202528	+	196	116329705	-	LBL_4176	-	lipoprotein
150	 42.57	0	202542..203234	+	230	116329706	-	LBL_4177	-	lipoprotein
151	 41.60	0	203239..205332	+	697	116329707	-	LBL_4178	-	TonB-dependant outer membrane receptor
152	 42.36	0	205733..206929	-	398	116329708	-	LBL_4179	-	permease
153	 39.97	0	206931..207608	-	225	116329709	-	LBL_4180	-	Heme oxygenase
154	 39.17	0	208119..209693	+	524	116329710	-	LBL_4181	-	hypothetical protein
155	 38.63	0	209693..210937	+	414	116329711	-	LBL_4182	-	hypothetical protein
156	 39.77	0	211658..213241	-	527	116329712	-	LBL_4183	-	trypsin-like serine protease
157	 41.95	0	213256..214764	-	502	116329713	-	LBL_4184	-	trypsin-like serine protease
158	 43.26	0	214795..215328	-	177	116329714	-	LBL_4185	-	adenine phosphoribosyltransferase
159	 44.14	+1	215528..216415	-	295	116329715	htpX	LBL_4186	-	heat shock protein HtpX
160	 44.44	+1	216647..218257	-	536	116329716	-	LBL_4187	-	permease
161	 41.82	0	218254..218736	-	160	116329717	-	LBL_4188	-	hypothetical protein
162	 43.00	0	218729..220621	-	630	116329718	-	LBL_4189	-	nucleoside-diphosphate sugar epimerase
163	 41.89	0	220768..221223	+	151	116329719	-	LBL_4190	-	hypothetical protein
164	 42.52	0	221229..223361	-	710	116329720	-	LBL_4191	-	hypothetical protein
165	 43.05	0	224281..225474	+	397	116329721	-	LBL_4192	-	ferredoxin related-protein
166	 43.01	0	225490..225861	+	123	116329722	-	LBL_4193	-	hypothetical protein
167	 42.78	0	225867..226607	+	246	116329723	-	LBL_4194	-	flavodoxin reductase
168	 45.86	+1	226633..227742	+	369	116329724	cbiD	LBL_4195	-	cobalt-precorrin-6A synthase
169	 43.75	0	227746..228417	+	223	116329725	cobH	LBL_4196	-	precorrin-8X methylmutase or isomerase
170	 42.59	0	228414..229655	+	413	116329726	cobL	LBL_4197	-	precorrin-6Y C5,15-methyltransferase (decarboxylating)
171	 42.22	0	229652..230416	+	254	116329727	cobF	LBL_4198	-	precorrin-6A synthase (deacetylating)
172	 41.35	0	230403..231587	+	394	116329728	cbiG	LBL_4199	-	cobalamin biosynthesis protein CbiG
173	 41.02	0	231578..233008	+	476	116329729	cobJ	LBL_4200	-	precorrin-3B C(17)-methyltransferase
174	 42.88	0	233022..233786	+	254	116329730	cobM	LBL_4201	-	precorrin-3B C(17)-methyltransferase
175	 44.88	+1	233783..234319	+	178	116329731	cobA/cobO	LBL_4202	-	Cob(I)yrinic acid a,c-diamide adenosyltransferase
176	 43.84	+1	234319..235698	+	459	116329732	cobB	LBL_4203	-	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing)
177	 41.22	0	235695..236366	+	223	116329733	cobZ	LBL_4204	-	cobalamin biosynthesis protein
178	 39.44	0	236529..237101	+	190	116329734	cobU	LBL_4205	-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
179	 39.34	0	237098..239695	+	865	116329735	cobQ	LBL_4206	-	bifunctional cobyric acid synthase/cobyric acid decarboxylase and cobyric acid synthase/cobyric acidaminotransferase
180	 38.91	0	239697..240665	+	322	116329736	cobD	LBL_4207	-	cobalamin biosynthesis protein
181	 40.64	0	240662..241441	+	259	116329737	gpmB	LBL_4208	-	phosphoglycerate mutase
182	 42.70	0	243015..244904	-	629	116329738	-	LBL_4210	-	hypothetical protein
183	 38.87	0	246324..247424	-	366	116329739	-	LBL_4212	-	transposase IS1533
184	 39.39	0	247901..248263	+	120	116329740	-	LBL_4213	-	hypothetical protein
185	 34.61	-2	248532..249863	+	443	116329741	-	LBL_4214	-	transposase ISLbp8
186	 37.30	-1	250944..251648	-	234	116329742	-	LBL_4216	-	LipL45-related protein
187	 36.23	-1	251720..252271	-	183	116329743	-	LBL_4217	-	hypothetical protein
188	 40.29	0	252334..253425	-	363	116329744	-	LBL_4218	-	LipL45-related protein
189	 38.70	0	253444..253965	-	173	116329745	-	LBL_4219	-	RNA polymerase sigma subunit
190	 38.66	0	254381..254812	+	143	116329746	-	LBL_4220	-	hypothetical protein
191	 43.26	0	255174..255455	-	93	116329747	-	LBL_4221	-	lipoprotein
192	 42.34	0	255452..257416	-	654	116329748	-	LBL_4222	-	hypothetical protein
193	 44.22	+1	257538..258428	-	296	116329749	-	LBL_4223	-	Alpha/beta hydrolase
194	 43.13	0	259201..260415	-	404	116329750	-	LBL_4224	-	sugar permease (arabinose polymer)
195	 35.72	-1	262481..263275	+	264	116329751	-	LBL_4226	-	hypothetical protein
196	 45.89	+1	263338..264930	+	530	116329752	-	LBL_4227	-	glutamate synthase domain-containing 2
197	 43.15	0	265587..266258	+	223	116329753	-	LBL_4228	-	hypothetical protein
198	 38.45	0	266323..267045	+	240	116329754	-	LBL_4229	-	hypothetical protein
199	 42.74	0	267576..267926	+	116	116329755	-	LBL_4230	-	hypothetical protein
200	 41.77	0	268042..268740	-	232	116329756	-	LBL_4231	-	Short chain dehydrogenase
201	 42.23	0	268756..269508	-	250	116329757	-	LBL_4232	-	aldolase/epimerase
202	 41.76	0	269510..270043	-	177	116329758	-	LBL_4233	-	ARD family protein
40.96	MEAN

2.80	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.