IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.21   STD DEV: 3.79
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome II, complete sequence - 1..277995
266 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
50	 37.89	0	48932..49612	+	226	189912898	-	LBF_4049	-	hypothetical protein
51	 40.16	0	49704..50084	+	126	189912899	-	LBF_4050	-	Hypothetical lipoprotein
52	 40.18	0	50183..50635	+	150	189912900	-	LBF_4051	-	Hypothetical lipoprotein
53	 36.38	0	50639..51163	+	174	189912901	-	LBF_4052	-	RNA polymerase sigma subunit
54	 36.36	0	51144..51407	+	87	189912902	-	LBF_4053	-	hypothetical protein
55	 38.30	0	51498..51839	+	113	189912903	-	LBF_4054	-	hypothetical protein
56	 40.26	0	51857..52549	-	230	189912904	-	LBF_4055	-	hypothetical protein
57	 39.81	0	52524..52739	-	71	189912905	-	LBF_4056	-	Cytochrome oxidase maturation protein
58	 39.95	0	52721..55183	-	820	189912906	atzN	LBF_4057	-	Cation transport ATPase
59	 37.01	0	55180..55668	-	162	189912907	-	LBF_4058	-	hypothetical protein
60	 40.45	0	55670..56989	-	439	189912908	napH	LBF_4059	-	Polyferredoxin
61	 44.07	+1	56992..57522	-	176	189912909	cccA	LBF_4060	-	Cytochrome C
62	 38.67	0	57528..57677	-	49	189912910	-	LBF_4061	-	Cytochrome oxidase maturation protein
63	 43.10	+1	57682..58377	-	231	189912911	ccoO	LBF_4062	-	Cytochrome C oxidase, subunit II
64	 41.72	0	58377..59807	-	476	189912912	ccoN	LBF_4063	-	Cytochrome C oxidase, subunit I
65	 40.97	0	59996..60964	-	322	189912913	-	LBF_4064	-	hypothetical protein
66	 45.81	+1	61178..62620	-	480	189912914	-	LBF_4065	-	NADPH-dependent glutamate synthase beta chain - related oxidoreductase
67	 45.06	+1	62613..67190	-	1525	189912915	gltB	LBF_4066	-	Glutamate synthase (NADH)
68	 39.77	0	67384..68595	-	403	189912916	-	LBF_4067	-	hypothetical protein
69	 40.78	0	68640..69593	+	317	189912917	-	LBF_4068	-	hypothetical protein
70	 30.00	-2	69911..70210	+	99	189912918	-	LBF_4069	-	hypothetical protein
71	 33.09	-1	70211..70615	+	134	189912919	-	LBF_4070	-	Transcription regulator
72	 39.93	0	70769..71314	-	181	189912920	aroK	LBF_4071	-	Shikimate kinase
73	 40.00	0	71336..72190	-	284	189912921	-	LBF_4072	-	Signal transduction protein
74	 39.48	0	72196..72699	-	167	189912922	-	LBF_4073	-	Chemotaxis protein
75	 39.71	0	72760..73983	+	407	189912923	traB	LBF_4074	-	Pheromone shutdown protein
76	 43.39	+1	74031..74408	+	125	189912924	-	LBF_4075	-	Hypothetical lipoprotein
77	 43.24	+1	74484..74927	+	147	189912925	-	LBF_4076	-	hypothetical protein
78	 37.25	0	74983..75876	-	297	189912926	-	LBF_4077	-	hypothetical protein
79	 44.54	+1	75989..76354	+	121	189912927	-	LBF_4078	-	hypothetical protein
80	 38.57	0	76356..77768	+	470	189912928	-	LBF_4079	-	Nucleotide glucose-1-phosphate uridylyl transferase
81	 39.77	0	77765..78028	+	87	189912929	-	LBF_4080	-	hypothetical protein
82	 40.01	0	78105..80516	-	803	189912930	-	LBF_4081	-	Cysteine protease
83	 43.15	+1	80518..81159	-	213	189912931	tonB	LBF_4082	-	TonB protein
84	 41.82	0	81171..81830	-	219	189912932	exbB	LBF_4083	-	TolQ-like transport protein
85	 37.43	0	81936..83816	+	626	189912933	-	LBF_4084	-	hypothetical protein
86	 43.95	+1	83829..87032	+	1067	189912934	-	LBF_4085	-	Efflux pump, AcrB family
87	 43.25	+1	87114..87476	+	120	189912935	-	LBF_4086	-	hypothetical protein
88	 35.74	0	87525..88769	+	414	189912936	-	LBF_4087	-	Signal transduction histidine kinase
89	 40.18	0	88766..89422	+	218	189912937	-	LBF_4088	-	Receiver component of a two-component response regulator
90	 45.88	+1	89749..90864	-	371	189912938	-	LBF_4090	-	Protein kinase
91	 47.03	+2	91002..93140	-	712	189912939	-	LBF_4091	-	Methylmalonyl-CoA mutase
92	 44.43	+1	93133..94953	-	606	189912940	sbm	LBF_4092	-	Methylmalonyl-COA mutase
93	 44.66	+1	94955..95263	-	102	189912941	-	LBF_4093	-	hypothetical protein
94	 39.91	0	95330..95998	+	222	189912942	-	LBF_4094	-	hypothetical protein
95	 37.91	0	96057..96821	+	254	189912943	-	LBF_4095	-	hypothetical protein
96	 40.99	0	96821..97303	+	160	189912944	-	LBF_4096	-	hypothetical protein
97	 44.69	+1	97293..98234	+	313	189912945	-	LBF_4097	-	Permease
98	 41.61	0	98281..99126	-	281	189912946	-	LBF_4098	-	RNA polymerase sigma subunit
99	 40.80	0	99126..99500	-	124	189912947	-	LBF_4099	-	hypothetical protein
100	 35.29	-1	99644..100051	-	135	189912948	-	LBF_4100	-	hypothetical protein
101	 41.79	0	100305..100694	-	129	189912949	-	LBF_4101	-	hypothetical protein
102	 43.11	+1	100767..101216	-	149	189912950	-	LBF_4102	-	hypothetical protein
103	 40.54	0	101357..102202	+	281	189912951	speE	LBF_4103	-	Spermidine synthase
104	 42.62	0	102210..103469	+	419	189912952	-	LBF_4104	-	hypothetical protein
105	 39.12	0	103459..104184	+	241	189912953	-	LBF_4105	-	hypothetical protein
106	 40.05	0	104181..105059	+	292	189912954	-	LBF_4106	-	Conserved hypothetical lipoprotein
107	 44.20	+1	105056..105874	+	272	189912955	pyrF	LBF_4107	-	Orotidine-5'-phosphate decarboxylase
108	 39.78	0	105901..107172	+	423	189912956	-	LBF_4108	-	NAD/FAD-binding protein
109	 34.91	-1	107163..107984	+	273	189912957	-	LBF_4109	-	hypothetical protein
110	 37.70	0	108064..109254	+	396	189912958	-	LBF_4110	-	Cyclopropane fatty acid synthase-related methyltransferase
111	 38.70	0	109368..109814	+	148	189912959	-	LBF_4111	-	hypothetical protein
112	 34.71	-1	109873..110235	+	120	189912960	-	LBF_4112	-	hypothetical protein
113	 33.05	-1	110320..111381	+	353	189912961	-	LBF_4113	-	hypothetical protein
114	 39.03	0	111335..112843	-	502	189912962	-	LBF_4114	-	Conserved hypothetical lipoprotein
115	 44.09	+1	112919..113485	+	188	189912963	-	LBF_4115	-	hypothetical protein
116	 36.86	0	113520..114995	+	491	189912964	-	LBF_4116	-	Bifunctional glycosyltransferase/sugar pyrophosphorylase
117	 38.42	0	114985..116025	+	346	189912965	-	LBF_4117	-	Nucleoside-diphosphate-sugar epimerase
118	 35.82	0	116027..116749	+	240	189912966	-	LBF_4118	-	Glycosyltransferase
119	 34.04	-1	116722..118287	+	521	189912967	-	LBF_4119	-	hypothetical protein
120	 35.39	-1	118307..119521	+	404	189912968	-	LBF_4120	-	hypothetical protein
121	 34.15	-1	119518..120990	-	490	189912969	-	LBF_4121	-	Trypsin-like serine protease
122	 37.18	0	120991..122496	-	501	189912970	-	LBF_4122	-	Trypsin-like serine protease
123	 33.53	-1	122570..123607	+	345	189912971	-	LBF_4123	-	hypothetical protein
124	 40.07	0	123643..124176	-	177	189912972	-	LBF_4124	-	Phosphoribosyltransferase
125	 44.89	+1	124269..125159	-	296	189912973	htpX	LBF_4125	-	Zn-dependent protease with chaperone function
126	 42.49	0	125243..126859	-	538	189912974	-	LBF_4126	-	Permease
127	 41.18	0	126856..127314	-	152	189912975	-	LBF_4127	-	hypothetical protein
128	 39.70	0	127311..129194	-	627	189912976	-	LBF_4128	-	Nucleoside-diphosphate sugar epimerase
129	 42.80	0	129278..129763	+	161	189912977	-	LBF_4129	-	hypothetical protein
130	 38.04	0	129745..132210	-	821	189912978	-	LBF_4130	-	HrpA-like helicase
131	 39.02	0	132329..133189	+	286	189912979	ada	LBF_4131	-	Methylated-DNA--[protein]-cysteine S- methyltransferase
132	 39.95	0	133186..133941	-	251	189912980	-	LBF_4132	-	hypothetical protein
133	 41.84	0	134117..134398	+	93	189912981	-	LBF_4133	-	Hypothetical lipoprotein
134	 36.42	0	134790..136118	+	442	189912982	-	LBF_4134	-	Transposase,ISLbi1
135	 39.85	0	136387..136785	-	132	189912983	-	LBF_4135	-	Hypothetical lipoprotein
136	 40.58	0	137089..137640	-	183	189912984	-	LBF_4136	-	hypothetical protein
137	 43.58	+1	137722..138765	-	347	189912985	-	LBF_4137	-	LipL45-related protein
138	 40.08	0	138771..139289	-	172	189912986	-	LBF_4138	-	RNA polymerase sigma subunit
139	 43.09	+1	139392..140795	-	467	189912987	lpdA	LBF_4139	-	Dihydrolipoamide dehydrogenase
140	 38.78	0	140974..143745	+	923	189912988	-	LBF_4140	-	Adenylate/guanylate cyclase
141	 38.64	0	143842..144501	+	219	189912989	ahpC	LBF_4141	-	Peroxiredoxin
142	 37.89	0	144545..144961	+	138	189912990	-	LBF_4142	-	Redox protein, regulator of disulfide bond formation
143	 32.94	-1	145071..145829	-	252	189912991	-	LBF_4143	-	hypothetical protein
144	 42.88	0	145901..146602	-	233	189912992	-	LBF_4144	-	Esterase
145	 37.60	0	146606..147682	-	358	189912993	dinP	LBF_4145	-	DNA damage-inducible protein DNA polymerase
146	 36.27	0	147696..148886	+	396	189912994	-	LBF_4146	-	Response regulator
147	 33.28	-1	148883..150877	+	664	189912995	-	LBF_4147	-	Signal transduction histidine kinase
148	 31.57	-2	150882..151277	-	131	189912996	-	LBF_4148	-	ExbD-related biopolymer transport protein
149	 37.63	0	151274..151738	-	154	189912997	-	LBF_4149	-	TolQ-like transport protein
39.21	MEAN

3.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.