IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.21 STD DEV: 3.79
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome II, complete sequence - 1..277995
266 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
162	 45.43	+1	166017..166826	-	269	189913010	-	LBF_4164	-	Amidohydrolase
163	 44.03	+1	166847..167725	+	292	189913011	argB	LBF_4165	-	Acetylglutamate kinase
164	 41.70	0	167732..169477	+	581	189913012	-	LBF_4166	-	Serine phosphatase RsbU, regulator of sigma subunit
165	 35.03	-1	169493..170083	+	196	189913013	-	LBF_4167	-	hypothetical protein
166	 40.29	0	170111..173317	-	1068	189913014	-	LBF_4168	-	Cation efflux protein
167	 35.88	0	173298..174317	-	339	189913015	acrA	LBF_4169	-	Membrane-fusion protein
168	 34.58	-1	174307..175665	-	452	189913016	-	LBF_4170	-	hypothetical protein
169	 38.69	0	175702..176130	-	142	189913017	-	LBF_4171	-	Hypothetical lipoprotein
170	 45.87	+1	176188..177495	-	435	189913018	pfkA	LBF_4172	-	6-phosphofructokinase
171	 44.40	+1	177580..178401	+	273	189913019	-	LBF_4173	-	hypothetical protein
172	 29.31	-2	178720..179439	+	239	189913020	-	LBF_4174	-	hypothetical protein
173	 41.50	0	179593..179898	-	101	189913021	-	LBF_4175	-	hypothetical protein
174	 42.67	0	179955..183671	-	1238	189913022	metH	LBF_4176	-	Methionine synthase
175	 40.00	0	183750..184049	-	99	189913023	-	LBF_4177	-	Conserved ferredoxin oxidoreductase-like hypothetical protein
176	 41.14	0	184098..185417	-	439	189913024	sahH	LBF_4178	-	S-adenosylhomocysteine hydrolase
177	 41.95	0	185428..186390	-	320	189913025	-	LBF_4179	-	Methylase/methyltransferase
178	 41.44	0	186488..189028	-	846	189913026	-	LBF_4180	-	Methyl-accepting chemotaxis protein
179	 43.17	+1	189103..190230	-	375	189913027	-	LBF_4181	-	hypothetical protein
180	 39.09	0	190284..191204	-	306	189913028	-	LBF_4182	-	Permease
181	 37.99	0	191249..191527	+	92	189913029	-	LBF_4183	-	hypothetical protein
182	 39.78	0	191563..191841	-	92	189913030	-	LBF_4184	-	Hypothetical lipoprotein
183	 40.06	0	191908..192264	+	118	189913031	-	LBF_4185	-	hypothetical protein
184	 37.89	0	192320..194380	+	686	189913032	-	LBF_4186	-	Methyl-accepting chemotaxis protein
185	 39.51	0	194392..196479	+	695	189913033	-	LBF_4187	-	Methyl-accepting chemotaxis protein
186	 33.73	-1	196789..198537	+	582	189913034	-	LBF_4188	-	Protease
187	 34.38	-1	198537..199496	+	319	189913035	corA	LBF_4189	-	Magnesium and cobalt transport protein
188	 35.98	0	199528..201342	-	604	189913036	-	LBF_4190	-	hypothetical protein
189	 42.82	0	201346..202083	-	245	189913037	-	LBF_4191	-	Short chain dehydrogenase
190	 42.14	0	202089..202826	-	245	189913038	-	LBF_4192	-	Short chain dehydrogenase
191	 42.70	0	202823..203452	-	209	189913039	-	LBF_4193	-	Aldolase/epimerase
192	 40.56	0	203455..204021	-	188	189913040	-	LBF_4194	-	Translation elongation factor P
193	 43.38	+1	204090..205154	+	354	189913041	kamA	LBF_4195	-	Lysine 2,3-aminomutase
194	 39.79	0	205138..205710	+	190	189913042	-	LBF_4196	-	Hypothetical lipoprotein
195	 36.71	0	205793..205999	+	68	189913043	-	LBF_4197	-	hypothetical protein
196	 41.09	0	206003..206788	+	261	189913044	-	LBF_4198	-	hypothetical protein
197	 39.20	0	206852..207379	-	175	189913045	-	LBF_4199	-	hypothetical protein
198	 41.70	0	207449..209110	+	553	189913046	-	LBF_4200	-	Sensor histidine kinase and response regulator of a two component complex
199	 43.84	+1	209180..210769	+	529	189913047	srmB	LBF_4201	-	ATP-dependent RNA helicase (superfamily II)
200	 39.96	0	210748..211818	-	356	189913048	-	LBF_4202	-	Cyclopropane fatty acid synthase-related methyltransferase
201	 44.08	+1	211835..212653	-	272	189913049	-	LBF_4203	-	hypothetical protein
202	 47.90	+2	212688..213497	-	269	189913050	-	LBF_4204	-	Short chain dehydrogenase
203	 47.41	+2	213590..214612	+	340	189913051	-	LBF_4205	-	Zinc-binding alcohol dehydrogenase
204	 38.27	0	214976..215644	-	222	189913052	-	LBF_4206	-	hypothetical protein
205	 37.92	0	215947..216186	-	79	189913053	-	LBF_4207	-	hypothetical protein
206	 37.27	0	216382..216711	-	109	189913054	-	LBF_4208	-	hypothetical protein
207	 31.83	-1	217125..218252	-	375	189913055	-	LBF_4209	-	Esterase
208	 43.59	+1	218752..220515	+	587	189913056	-	LBF_4210	-	hypothetical protein
209	 36.97	0	221057..221935	-	292	189913057	-	LBF_4211	-	Ankyrin repeat protein
210	 34.51	-1	222698..223465	-	255	189913058	-	LBF_4212	-	hypothetical protein
211	 42.04	0	223462..223863	-	133	189913059	-	LBF_4213	-	hypothetical protein
212	 40.93	0	224081..224857	+	258	189913060	-	LBF_4214	-	hypothetical protein
213	 37.62	0	224888..226030	+	380	189913061	-	LBF_4215	-	hypothetical protein
214	 38.31	0	226103..226504	-	133	189913062	-	LBF_4216	-	Hypothetical lipoprotein
215	 33.84	-1	226501..226896	-	131	189913063	-	LBF_4217	-	Hypothetical lipoprotein
216	 31.25	-2	226877..227212	-	111	189913064	-	LBF_4218	-	hypothetical protein
217	 48.34	+2	227205..228017	-	270	189913065	-	LBF_4219	-	Divalent heavy-metal cations transporter
218	 47.01	+2	228018..228602	-	194	189913066	-	LBF_4220	-	hypothetical protein
219	 38.89	0	228693..229088	+	131	189913067	-	LBF_4221	-	hypothetical protein
220	 41.56	0	229262..230233	-	323	189913068	-	LBF_4222	-	tRNA synthetase class II (D, K and N)
221	 41.94	0	230246..230605	+	119	189913069	-	LBF_4223	-	hypothetical protein
222	 44.12	+1	230574..230990	-	138	189913070	-	LBF_4224	-	hypothetical protein
223	 40.63	0	231049..231774	+	241	189913071	-	LBF_4225	-	Response regulator
224	 39.86	0	231792..232067	+	91	189913072	-	LBF_4226	-	hypothetical protein
225	 38.44	0	232068..232400	+	110	189913073	-	LBF_4227	-	hypothetical protein
226	 40.24	0	232406..232651	+	81	189913074	-	LBF_4228	-	hypothetical protein
227	 42.42	0	232702..233031	+	109	189913075	cutA	LBF_4229	-	Divalent ion tolerance protein
228	 44.14	+1	233265..233588	+	107	189913076	-	LBF_4230	-	Transcriptional regulator, ArsR family
229	 39.43	0	233633..234124	+	163	189913077	-	LBF_4231	-	hypothetical protein
230	 35.12	-1	234135..234749	+	204	189913078	-	LBF_4232	-	hypothetical protein
231	 40.74	0	234843..235220	+	125	189913079	-	LBF_4233	-	hypothetical protein
232	 37.00	0	235393..236073	-	226	189913080	pnuC	LBF_4234	-	Nicotinamide mononucleotide transporter
233	 36.27	0	236195..236875	-	226	189913081	-	LBF_4235	-	hypothetical protein
234	 35.69	0	236875..238104	-	409	189913082	-	LBF_4236	-	hypothetical protein
235	 45.52	+1	238127..240382	-	751	189913083	acnA	LBF_4237	-	Aconitate hydratase
236	 41.92	0	240493..240993	-	166	189913084	-	LBF_4238	-	Hypothetical lipoprotein
237	 36.76	0	240983..242002	-	339	189913085	-	LBF_4239	-	hypothetical protein
238	 39.87	0	242055..243095	-	346	189913086	queA	LBF_4240	-	S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuosine synthetase)
239	 34.34	-1	243159..244451	+	430	189913087	-	LBF_4241	-	hypothetical protein
240	 35.34	-1	244429..245523	+	364	189913088	-	LBF_4242	-	Glycosyltransferase
241	 33.67	-1	245520..246107	+	195	189913089	-	LBF_4243	-	hypothetical protein
242	 34.81	-1	246123..247409	+	428	189913090	-	LBF_4244	-	hypothetical protein
243	 35.40	-1	247420..248916	+	498	189913091	-	LBF_4245	-	DltB-related membrane protein
244	 34.99	-1	248919..250064	+	381	189913092	-	LBF_4246	-	hypothetical protein
245	 36.28	0	250051..250389	+	112	189913093	-	LBF_4247	-	Pyrophosphatase
246	 34.44	-1	250386..251111	-	241	189913094	-	LBF_4248	-	hypothetical protein
247	 37.26	0	251113..252870	-	585	189913095	-	LBF_4249	-	hypothetical protein
248	 38.89	0	252863..254716	-	617	189913096	-	LBF_4250	-	Conserved hypothetical lipoprotein
249	 38.22	0	254703..256217	-	504	189913097	-	LBF_4251	-	hypothetical protein
250	 37.33	0	256201..257502	-	433	189913098	-	LBF_4252	-	Peptidase
251	 34.73	-1	257512..259089	-	525	189913099	-	LBF_4253	-	Methyl-accepting chemotaxis protein
252	 44.04	+1	259198..259935	+	245	189913100	-	LBF_4254	-	Pirin related protein
253	 36.84	0	260515..262227	+	570	189913101	prc	LBF_4255	-	Periplasmic protease
254	 42.44	0	262443..263123	+	226	189913102	cynT	LBF_4256	-	Carbonate dehydratase
255	 42.43	0	263133..264110	+	325	189913103	-	LBF_4257	-	Permease
256	 38.51	0	264107..264415	+	102	189913104	-	LBF_4258	-	hypothetical protein
257	 40.59	0	264423..265841	-	472	189913105	-	LBF_4259	-	OMA87-related protein
258	 41.42	0	265847..267280	-	477	189913106	pykF	LBF_4260	-	Pyruvate kinase
259	 38.68	0	267285..269285	-	666	189913107	-	LBF_4261	-	hypothetical protein
260	 43.52	+1	269301..270350	-	349	189913108	asd	LBF_4262	-	Aspartate-semialdehyde dehydrogenase
261	 39.78	0	270387..271907	-	506	189913109	-	LBF_4263	-	hypothetical protein
39.21	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.