IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.21   STD DEV: 3.79
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosome II, complete sequence - 1..277995
266 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
84	 41.82	0	81171..81830	-	219	189912932	exbB	LBF_4083	-	TolQ-like transport protein
85	 37.43	0	81936..83816	+	626	189912933	-	LBF_4084	-	hypothetical protein
86	 43.95	+1	83829..87032	+	1067	189912934	-	LBF_4085	-	Efflux pump, AcrB family
87	 43.25	+1	87114..87476	+	120	189912935	-	LBF_4086	-	hypothetical protein
88	 35.74	0	87525..88769	+	414	189912936	-	LBF_4087	-	Signal transduction histidine kinase
89	 40.18	0	88766..89422	+	218	189912937	-	LBF_4088	-	Receiver component of a two-component response regulator
90	 45.88	+1	89749..90864	-	371	189912938	-	LBF_4090	-	Protein kinase
91	 47.03	+2	91002..93140	-	712	189912939	-	LBF_4091	-	Methylmalonyl-CoA mutase
92	 44.43	+1	93133..94953	-	606	189912940	sbm	LBF_4092	-	Methylmalonyl-COA mutase
93	 44.66	+1	94955..95263	-	102	189912941	-	LBF_4093	-	hypothetical protein
94	 39.91	0	95330..95998	+	222	189912942	-	LBF_4094	-	hypothetical protein
95	 37.91	0	96057..96821	+	254	189912943	-	LBF_4095	-	hypothetical protein
96	 40.99	0	96821..97303	+	160	189912944	-	LBF_4096	-	hypothetical protein
97	 44.69	+1	97293..98234	+	313	189912945	-	LBF_4097	-	Permease
98	 41.61	0	98281..99126	-	281	189912946	-	LBF_4098	-	RNA polymerase sigma subunit
99	 40.80	0	99126..99500	-	124	189912947	-	LBF_4099	-	hypothetical protein
100	 35.29	-1	99644..100051	-	135	189912948	-	LBF_4100	-	hypothetical protein
101	 41.79	0	100305..100694	-	129	189912949	-	LBF_4101	-	hypothetical protein
102	 43.11	+1	100767..101216	-	149	189912950	-	LBF_4102	-	hypothetical protein
103	 40.54	0	101357..102202	+	281	189912951	speE	LBF_4103	-	Spermidine synthase
104	 42.62	0	102210..103469	+	419	189912952	-	LBF_4104	-	hypothetical protein
105	 39.12	0	103459..104184	+	241	189912953	-	LBF_4105	-	hypothetical protein
106	 40.05	0	104181..105059	+	292	189912954	-	LBF_4106	-	Conserved hypothetical lipoprotein
107	 44.20	+1	105056..105874	+	272	189912955	pyrF	LBF_4107	-	Orotidine-5'-phosphate decarboxylase
108	 39.78	0	105901..107172	+	423	189912956	-	LBF_4108	-	NAD/FAD-binding protein
109	 34.91	-1	107163..107984	+	273	189912957	-	LBF_4109	-	hypothetical protein
110	 37.70	0	108064..109254	+	396	189912958	-	LBF_4110	-	Cyclopropane fatty acid synthase-related methyltransferase
111	 38.70	0	109368..109814	+	148	189912959	-	LBF_4111	-	hypothetical protein
112	 34.71	-1	109873..110235	+	120	189912960	-	LBF_4112	-	hypothetical protein
113	 33.05	-1	110320..111381	+	353	189912961	-	LBF_4113	-	hypothetical protein
114	 39.03	0	111335..112843	-	502	189912962	-	LBF_4114	-	Conserved hypothetical lipoprotein
115	 44.09	+1	112919..113485	+	188	189912963	-	LBF_4115	-	hypothetical protein
116	 36.86	0	113520..114995	+	491	189912964	-	LBF_4116	-	Bifunctional glycosyltransferase/sugar pyrophosphorylase
117	 38.42	0	114985..116025	+	346	189912965	-	LBF_4117	-	Nucleoside-diphosphate-sugar epimerase
118	 35.82	0	116027..116749	+	240	189912966	-	LBF_4118	-	Glycosyltransferase
119	 34.04	-1	116722..118287	+	521	189912967	-	LBF_4119	-	hypothetical protein
120	 35.39	-1	118307..119521	+	404	189912968	-	LBF_4120	-	hypothetical protein
121	 34.15	-1	119518..120990	-	490	189912969	-	LBF_4121	-	Trypsin-like serine protease
122	 37.18	0	120991..122496	-	501	189912970	-	LBF_4122	-	Trypsin-like serine protease
123	 33.53	-1	122570..123607	+	345	189912971	-	LBF_4123	-	hypothetical protein
124	 40.07	0	123643..124176	-	177	189912972	-	LBF_4124	-	Phosphoribosyltransferase
125	 44.89	+1	124269..125159	-	296	189912973	htpX	LBF_4125	-	Zn-dependent protease with chaperone function
126	 42.49	0	125243..126859	-	538	189912974	-	LBF_4126	-	Permease
127	 41.18	0	126856..127314	-	152	189912975	-	LBF_4127	-	hypothetical protein
128	 39.70	0	127311..129194	-	627	189912976	-	LBF_4128	-	Nucleoside-diphosphate sugar epimerase
129	 42.80	0	129278..129763	+	161	189912977	-	LBF_4129	-	hypothetical protein
130	 38.04	0	129745..132210	-	821	189912978	-	LBF_4130	-	HrpA-like helicase
131	 39.02	0	132329..133189	+	286	189912979	ada	LBF_4131	-	Methylated-DNA--[protein]-cysteine S- methyltransferase
132	 39.95	0	133186..133941	-	251	189912980	-	LBF_4132	-	hypothetical protein
133	 41.84	0	134117..134398	+	93	189912981	-	LBF_4133	-	Hypothetical lipoprotein
134	 36.42	0	134790..136118	+	442	189912982	-	LBF_4134	-	Transposase,ISLbi1
135	 39.85	0	136387..136785	-	132	189912983	-	LBF_4135	-	Hypothetical lipoprotein
136	 40.58	0	137089..137640	-	183	189912984	-	LBF_4136	-	hypothetical protein
137	 43.58	+1	137722..138765	-	347	189912985	-	LBF_4137	-	LipL45-related protein
138	 40.08	0	138771..139289	-	172	189912986	-	LBF_4138	-	RNA polymerase sigma subunit
139	 43.09	+1	139392..140795	-	467	189912987	lpdA	LBF_4139	-	Dihydrolipoamide dehydrogenase
140	 38.78	0	140974..143745	+	923	189912988	-	LBF_4140	-	Adenylate/guanylate cyclase
141	 38.64	0	143842..144501	+	219	189912989	ahpC	LBF_4141	-	Peroxiredoxin
142	 37.89	0	144545..144961	+	138	189912990	-	LBF_4142	-	Redox protein, regulator of disulfide bond formation
143	 32.94	-1	145071..145829	-	252	189912991	-	LBF_4143	-	hypothetical protein
144	 42.88	0	145901..146602	-	233	189912992	-	LBF_4144	-	Esterase
145	 37.60	0	146606..147682	-	358	189912993	dinP	LBF_4145	-	DNA damage-inducible protein DNA polymerase
146	 36.27	0	147696..148886	+	396	189912994	-	LBF_4146	-	Response regulator
147	 33.28	-1	148883..150877	+	664	189912995	-	LBF_4147	-	Signal transduction histidine kinase
148	 31.57	-2	150882..151277	-	131	189912996	-	LBF_4148	-	ExbD-related biopolymer transport protein
149	 37.63	0	151274..151738	-	154	189912997	-	LBF_4149	-	TolQ-like transport protein
150	 41.26	0	151755..152486	+	243	189912998	ubiE	LBF_4150	-	Methylase involved in ubiquinone/menaquinone biosynthesis
151	 40.72	0	154481..155887	+	468	189912999	-	LBF_4153	-	Acyl-CoA synthetase
152	 38.44	0	155948..156319	-	123	189913000	-	LBF_4154	-	hypothetical protein
153	 38.52	0	156344..156748	-	134	189913001	-	LBF_4155	-	hypothetical protein
154	 37.48	0	156826..158055	+	409	189913002	-	LBF_4156	-	Methyl-accepting chemotaxis protein
155	 37.37	0	158104..158598	+	164	189913003	-	LBF_4157	-	hypothetical protein
156	 38.53	0	158675..160753	-	692	189913004	-	LBF_4158	-	hypothetical protein
157	 47.96	+2	160962..161426	-	154	189913005	dksA	LBF_4159	-	DnaK suppressor protein
158	 45.50	+1	161631..162575	-	314	189913006	-	LBF_4160	-	Sodium-dependent transporter
159	 41.06	0	162724..163926	-	400	189913007	csdB	LBF_4161	-	Selenocysteine lyase
160	 43.15	+1	163982..165112	+	376	189913008	alr	LBF_4162	-	Alanine racemase
161	 42.84	0	165121..166014	+	297	189913009	-	LBF_4163	-	Alpha/beta hydrolase superfamily protein
162	 45.43	+1	166017..166826	-	269	189913010	-	LBF_4164	-	Amidohydrolase
163	 44.03	+1	166847..167725	+	292	189913011	argB	LBF_4165	-	Acetylglutamate kinase
164	 41.70	0	167732..169477	+	581	189913012	-	LBF_4166	-	Serine phosphatase RsbU, regulator of sigma subunit
165	 35.03	-1	169493..170083	+	196	189913013	-	LBF_4167	-	hypothetical protein
166	 40.29	0	170111..173317	-	1068	189913014	-	LBF_4168	-	Cation efflux protein
167	 35.88	0	173298..174317	-	339	189913015	acrA	LBF_4169	-	Membrane-fusion protein
168	 34.58	-1	174307..175665	-	452	189913016	-	LBF_4170	-	hypothetical protein
169	 38.69	0	175702..176130	-	142	189913017	-	LBF_4171	-	Hypothetical lipoprotein
170	 45.87	+1	176188..177495	-	435	189913018	pfkA	LBF_4172	-	6-phosphofructokinase
171	 44.40	+1	177580..178401	+	273	189913019	-	LBF_4173	-	hypothetical protein
172	 29.31	-2	178720..179439	+	239	189913020	-	LBF_4174	-	hypothetical protein
173	 41.50	0	179593..179898	-	101	189913021	-	LBF_4175	-	hypothetical protein
174	 42.67	0	179955..183671	-	1238	189913022	metH	LBF_4176	-	Methionine synthase
175	 40.00	0	183750..184049	-	99	189913023	-	LBF_4177	-	Conserved ferredoxin oxidoreductase-like hypothetical protein
176	 41.14	0	184098..185417	-	439	189913024	sahH	LBF_4178	-	S-adenosylhomocysteine hydrolase
177	 41.95	0	185428..186390	-	320	189913025	-	LBF_4179	-	Methylase/methyltransferase
178	 41.44	0	186488..189028	-	846	189913026	-	LBF_4180	-	Methyl-accepting chemotaxis protein
179	 43.17	+1	189103..190230	-	375	189913027	-	LBF_4181	-	hypothetical protein
180	 39.09	0	190284..191204	-	306	189913028	-	LBF_4182	-	Permease
181	 37.99	0	191249..191527	+	92	189913029	-	LBF_4183	-	hypothetical protein
182	 39.78	0	191563..191841	-	92	189913030	-	LBF_4184	-	Hypothetical lipoprotein
183	 40.06	0	191908..192264	+	118	189913031	-	LBF_4185	-	hypothetical protein
39.21	MEAN

3.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.