IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.82   STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
44	 38.25	0	43771..44421	+	216	183219471	-	LEPBI_I0044	-	putative carboxylesterase 2
45	 34.15	-1	44434..45171	-	245	183219472	-	LEPBI_I0045	-	hypothetical protein
46	 34.92	0	45579..45704	+	41	183219473	-	LEPBI_I0046	-	hypothetical protein
47	 34.94	0	45843..46835	-	330	183219474	-	LEPBI_I0047	-	IS30 family transposase
48	 32.47	-1	47002..47232	-	76	183219475	-	LEPBI_I0048	-	hypothetical protein
49	 41.07	0	47282..48586	-	434	183219476	purB	LEPBI_I0049	-	adenylosuccinate lyase
50	 41.41	0	48695..49462	+	255	183219477	fabG3b	LEPBI_I0050	-	3-oxoacyl-[acyl-carrier-protein] reductase
51	 38.32	0	49449..51413	-	654	183219478	-	LEPBI_I0051	-	hypothetical protein
52	 38.31	0	51508..52290	-	260	183219479	-	LEPBI_I0052	-	putative enoyl-CoA hydratase
53	 33.98	-1	52407..53330	-	307	183219480	-	LEPBI_I0053	-	hypothetical protein
54	 34.74	0	53386..54735	-	449	183219481	-	LEPBI_I0054	-	hypothetical protein
55	 41.46	0	54824..55069	+	81	183219482	yeaQ	LEPBI_I0055	-	hypothetical protein
56	 45.03	+1	55184..55927	-	247	183219483	-	LEPBI_I0056	-	hypothetical protein
57	 44.22	+1	56051..57217	+	388	183219484	acdA2	LEPBI_I0057	-	Acyl-CoA dehydrogenase
58	 38.25	0	57274..57843	+	189	183219485	trpG2	LEPBI_I0058	-	anthranilate synthase component II
59	 39.08	0	57840..59735	+	631	183219486	-	LEPBI_I0059	-	ABC transporter, atp-binding protein; putative membrane protein
60	 41.04	0	59732..60133	+	133	183219487	-	LEPBI_I0060	-	putative response regulator receiver
61	 39.15	0	60120..61994	-	624	183219488	-	LEPBI_I0061	-	hypothetical protein
62	 41.23	0	62138..63694	+	518	183219489	-	LEPBI_I0062	-	GTP-binding protein
63	 37.37	0	63681..64052	-	123	183219490	-	LEPBI_I0063	-	putative anti-sigma factor antagonist
64	 45.33	+1	64057..65340	-	427	183219491	hom	LEPBI_I0064	-	homoserine dehydrogenase (HDH)
65	 40.00	0	65440..66144	+	234	183219492	-	LEPBI_I0065	-	hypothetical protein
66	 39.54	0	66148..66759	-	203	183219493	-	LEPBI_I0066	-	hypothetical protein
67	 40.38	0	66761..68122	+	453	183219494	-	LEPBI_I0067	-	hypothetical protein
68	 40.26	0	68131..68592	-	153	183219495	-	LEPBI_I0068	-	MarR family transcriptional regulator
69	 42.53	0	68630..70216	-	528	183219496	-	LEPBI_I0069	-	putative dehydrogenase-related protein
70	 38.77	0	70219..71652	-	477	183219497	-	LEPBI_I0070	-	hypothetical protein
71	 41.55	0	71745..72608	+	287	183219498	-	LEPBI_I0071	-	putative S-methyl-5-thioadenosine phosphorylase
72	 36.13	0	72605..72997	-	130	183219499	-	LEPBI_I0072	-	putative anti-sigma factor antagonist
73	 39.15	0	72994..74163	-	389	183219500	galK	LEPBI_I0073	-	galactokinase (galactose kinase)
74	 40.35	0	74208..75560	+	450	183219501	pgi	LEPBI_I0074	-	glucose-6-phosphate isomerase
75	 34.85	0	75537..76259	-	240	183219502	-	LEPBI_I0075	-	putative nucleotide-diphospho-sugar transferase
76	 34.14	-1	76256..77245	-	329	183219503	-	LEPBI_I0076	-	putative kinase
77	 36.71	0	77254..78765	-	503	183219504	-	LEPBI_I0077	-	putative sensor protein
78	 34.00	-1	78758..80551	-	597	183219505	-	LEPBI_I0078	-	ABC transporter ATPase
79	 37.13	0	80553..81422	+	289	183219506	-	LEPBI_I0079	-	putative proline iminopeptidase
80	 43.59	+1	81423..81656	-	77	183219507	-	LEPBI_I0080	-	putative ferredoxin
81	 38.25	0	81706..82071	+	121	183219508	-	LEPBI_I0081	-	putative response regulator
82	 38.24	0	82068..82841	-	257	183219509	-	LEPBI_I0082	-	putative ribosomal RNA methyltransferase, putative hemolysine TlyA-like protein
83	 40.15	0	82822..83745	-	307	183219510	ispA	LEPBI_I0083	-	geranyltranstransferase
84	 43.72	+1	83799..84212	-	137	183219511	ndk	LEPBI_I0084	-	nucleoside diphosphate kinase
85	 41.16	0	84255..86363	-	702	183219512	kefB	LEPBI_I0085	-	glutathione-regulated potassium-efflux system protein KefB; putative membrane protein
86	 40.37	0	86381..86863	-	160	183219513	coaD	LEPBI_I0086	-	phosphopantetheine adenylyltransferase
87	 41.77	0	86865..88073	-	402	183219514	argG	LEPBI_I0087	-	argininosuccinate synthase (citrulline--aspartate ligase)
88	 42.47	0	88155..89303	+	382	183219515	-	LEPBI_I0088	-	putative signal peptide
89	 41.52	0	89314..89814	+	166	183219516	-	LEPBI_I0089	-	putative signal peptide
90	 43.47	+1	89804..91372	+	522	183219517	-	LEPBI_I0090	-	putative oxidase
91	 40.75	0	91365..92564	-	399	183219518	-	LEPBI_I0091	-	putative tRNA (uracil-5-)-methyltransferase
92	 40.32	0	92561..93634	-	357	183219519	pyrD	LEPBI_I0092	-	dihydroorotate dehydrogenase (dihydroorotate oxydase)
93	 36.91	0	93732..95351	+	539	183219520	-	LEPBI_I0093	-	putative sensor protein
94	 37.63	0	95348..96277	+	309	183219521	-	LEPBI_I0094	-	putative two-component response regulator
95	 35.67	0	96280..96921	-	213	183219522	-	LEPBI_I0095	-	putative beta-phosphoglucomutase
96	 36.83	0	96911..97624	-	237	183219523	rluD	LEPBI_I0096	-	pseudouridine synthase (Uracil hydrolyase)
97	 37.51	0	97621..98793	-	390	183219524	-	LEPBI_I0097	-	ankyrin repeat-containing protein
98	 39.09	0	98787..100142	-	451	183219525	-	LEPBI_I0098	-	hypothetical protein
99	 36.73	0	100261..101466	+	401	183219526	-	LEPBI_I0099	-	hypothetical protein
100	 36.79	0	101487..102065	-	192	183219527	-	LEPBI_I0100	-	TetR family transcriptional regulator
101	 37.42	0	102190..102801	+	203	183219528	-	LEPBI_I0101	-	hypothetical protein
102	 38.20	0	102794..104335	+	513	183219529	-	LEPBI_I0102	-	putative oxidoreductase
103	 34.58	-1	104337..105215	+	292	183219530	-	LEPBI_I0103	-	putative transporter, sodium/bile acid transporter family protein
104	 39.80	0	105216..106343	+	375	183219531	acdA1	LEPBI_I0104	-	Acyl-CoA dehydrogenase
105	 34.26	-1	106345..107313	+	322	183219532	-	LEPBI_I0105	-	hypothetical protein
106	 34.66	-1	107324..108154	+	276	183219533	-	LEPBI_I0106	-	putative short chain dehydrogenase
107	 33.59	-1	108163..110088	+	641	183219534	-	LEPBI_I0107	-	long-chain-fatty-acid--CoA ligase
108	 32.70	-1	110100..110885	+	261	183219535	-	LEPBI_I0108	-	putative enoyl-CoA hydratase/carnithine racemase
109	 34.36	-1	110888..112450	+	520	183219536	-	LEPBI_I0109	-	putative methyl-accepting chemotaxis protein; putative membrane protein
110	 34.31	-1	112479..113708	+	409	183219537	-	LEPBI_I0110	-	hypothetical protein
111	 40.62	0	113710..114876	-	388	183219538	-	LEPBI_I0111	-	putative signal peptide
112	 40.15	0	114906..116696	-	596	183219539	-	LEPBI_I0112	-	hypothetical protein
113	 40.06	0	116686..117651	-	321	183219540	-	LEPBI_I0113	-	putative UDP-glucose 4-epimerase (UDP-galactose 4-epimerase)
114	 38.26	0	117653..118546	-	297	183219541	-	LEPBI_I0114	-	putative transporter, sodium/bile acid cotransporter family protein
115	 34.76	0	118904..119323	-	139	183219542	-	LEPBI_I0115	-	hypothetical protein
116	 37.99	0	119511..121076	+	521	183219543	-	LEPBI_I0116	-	putative methyl-accepting chemotaxis protein; putative membrane protein
117	 39.22	0	121078..121977	-	299	183219544	-	LEPBI_I0117	-	hypothetical protein
118	 40.20	0	121989..122585	-	198	183219545	-	LEPBI_I0118	-	hypothetical protein
119	 33.84	-1	122692..123288	+	198	183219546	-	LEPBI_I0119	-	hypothetical protein
120	 40.60	0	123425..123988	-	187	183219547	-	LEPBI_I0120	-	hypothetical protein
121	 36.07	0	124037..124474	-	145	183219548	-	LEPBI_I0121	-	hypothetical protein
122	 39.67	0	124652..125077	+	141	183219549	-	LEPBI_I0122	-	hypothetical protein
123	 31.22	-1	125251..125439	-	62	183219550	-	LEPBI_I0123	-	hypothetical protein
124	 43.94	+1	125446..126105	+	219	183219551	-	LEPBI_I0124	-	hypothetical protein
125	 35.83	0	126179..126499	+	106	183219552	-	LEPBI_I0125	-	hypothetical protein
126	 40.74	0	126550..127305	-	251	183219553	fabG2	LEPBI_I0126	-	3-oxoacyl-[acyl-carrier-protein] reductase
127	 41.33	0	127573..128460	+	295	183219554	-	LEPBI_I0127	-	putative HTH-type transcriptional regulator
128	 41.58	0	128612..130006	+	464	183219555	-	LEPBI_I0128	-	putative signal peptide
129	 33.71	-1	130010..130534	+	174	183219556	-	LEPBI_I0130	-	hypothetical protein
130	 38.00	0	130774..131202	-	142	183219557	-	LEPBI_I0131	-	hypothetical protein
131	 34.36	-1	131384..131773	+	129	183219558	-	LEPBI_I0132	-	hypothetical protein
132	 35.98	0	131787..132164	-	125	183219559	-	LEPBI_I0133	-	hypothetical protein
133	 37.63	0	133073..134260	+	395	183219560	-	LEPBI_I0134	-	hypothetical protein
134	 35.17	0	134352..135005	+	217	183219561	-	LEPBI_I0135	-	hypothetical protein
135	 37.17	0	135002..135730	+	242	183219562	-	LEPBI_I0136	-	putative MotB protein
136	 29.25	-2	135801..136412	+	203	183219563	-	LEPBI_I0137	-	hypothetical protein
137	 35.16	0	136531..136968	+	145	183219564	-	LEPBI_I0138	-	hypothetical protein
138	 28.94	-2	136965..138308	-	447	183219565	-	LEPBI_I0139	-	putative sensor protein
139	 31.11	-1	138351..138440	-	29	183219566	-	LEPBI_I0141	-	hypothetical protein
140	 49.09	+2	138437..139153	-	238	183219567	glpF	LEPBI_I0142	-	glycerol uptake facilitator protein; putative membrane protein
141	 43.78	+1	139288..140589	+	433	183219568	maeB	LEPBI_I0143	-	NADP-dependent malic enzyme
142	 34.95	0	140731..141102	+	123	183219569	-	LEPBI_I0144	-	hypothetical protein
143	 36.14	0	141349..142203	+	284	183219570	-	LEPBI_I0145	-	hypothetical protein
38.82	MEAN

4.08	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.