IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.82   STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
747	 41.69	0	779146..780390	+	414	183220174	-	LEPBI_I0763	-	putative oxidoreductase/dehydrogenase; putative signal peptide
748	 41.06	0	780383..781819	-	478	183220175	pykF	LEPBI_I0764	-	pyruvate kinase (PK)
749	 36.44	0	781911..782810	+	299	183220176	-	LEPBI_I0765	-	putative arginase/deacetylase
750	 35.78	0	782810..783625	+	271	183220177	-	LEPBI_I0766	-	hypothetical protein
751	 37.74	0	783654..784766	+	370	183220178	-	LEPBI_I0767	-	putative two-component response regulator
752	 33.33	-1	784723..786339	-	538	183220179	-	LEPBI_I0768	-	hypothetical protein
753	 33.69	-1	786336..788015	-	559	183220180	-	LEPBI_I0769	-	hypothetical protein
754	 35.05	0	788192..788656	-	154	183220181	-	LEPBI_I0770	-	putative signal peptide
755	 39.16	0	788726..790612	-	628	183220182	-	LEPBI_I0772	-	Alpha-glucosidase
756	 38.03	0	790667..791305	+	212	183220183	rnd	LEPBI_I0773	-	ribonuclease D
757	 45.10	+1	791305..792672	+	455	183220184	radA	LEPBI_I0774	-	DNA repair protein
758	 43.40	+1	793005..794117	+	370	183220185	-	LEPBI_I0775	-	putative triacylglycerol lipase; putative signal peptide
759	 41.94	0	794217..795215	+	332	183220186	-	LEPBI_I0776	-	hypothetical protein
760	 44.52	+1	795232..796143	+	303	183220187	-	LEPBI_I0777	-	putative triglyceride lipase; putative signal peptide
761	 36.52	0	796250..797284	+	344	183220188	-	LEPBI_I0778	-	putative signal peptide
762	 42.71	0	797297..798256	-	319	183220189	-	LEPBI_I0779	-	putative signal peptide
763	 38.95	0	798337..798906	+	189	183220190	-	LEPBI_I0780	-	hypothetical protein
764	 42.84	0	798903..799838	+	311	183220191	-	LEPBI_I0781	-	putative deacetylase
765	 39.44	0	799840..801117	-	425	183220192	-	LEPBI_I0782	-	hypothetical protein
766	 41.93	0	801350..802606	-	418	183220193	-	LEPBI_I0783	-	hypothetical protein
767	 42.93	+1	802677..804281	-	534	183220194	-	LEPBI_I0784	-	aldehyde dehydrogenase
768	 50.77	+2	804354..804548	+	64	183220195	-	LEPBI_I0785	-	hypothetical protein
769	 41.39	0	804620..805798	+	392	183220196	-	LEPBI_I0786	-	putative acyl dehydratase
770	 40.86	0	805808..806830	+	340	183220197	-	LEPBI_I0787	-	putative metallo-beta-lactamase
771	 36.56	0	806891..808654	-	587	183220198	-	LEPBI_I0788	-	hypothetical protein
772	 38.64	0	808655..809446	-	263	183220199	-	LEPBI_I0789	-	hypothetical protein
773	 40.56	0	809558..810595	+	345	183220200	lepB2	LEPBI_I0790	-	Signal peptidase I (leader peptidase I)
774	 41.67	0	810592..810819	+	75	183220201	-	LEPBI_I0791	-	hypothetical protein
775	 39.43	0	811077..812798	+	573	183220202	ilvB1	LEPBI_I0792	-	acetolactate synthase isozyme I large subunit
776	 39.37	0	812851..813198	-	115	183220203	glnB	LEPBI_I0793	-	nitrogen regulatory protein PII
777	 40.62	0	813204..814493	-	429	183220204	amtB1	LEPBI_I0794	-	ammonium transporter
778	 36.01	0	814822..815307	+	161	183220205	gpo	LEPBI_I0796	-	glutathione peroxidase
779	 38.31	0	815330..815731	+	133	183220206	-	LEPBI_I0798	-	MarR family transcriptional regulator
780	 35.19	0	815824..815877	+	17	183220207	-	LEPBI_I0799	-	hypothetical protein
781	 43.17	+1	815952..816449	+	165	183220208	-	LEPBI_I0800	-	hypothetical protein
782	 43.98	+1	816568..817497	+	309	183220209	atpB	LEPBI_I0801	-	ATP synthase F0, A subunit; putative membrane protein; putative signal peptide
783	 46.67	+1	817546..817830	+	94	183220210	atpE	LEPBI_I0802	-	ATP synthase F0, C subunit (Lipid-binding protein)
784	 42.48	0	817833..818357	+	174	183220211	atpF	LEPBI_I0803	-	ATP synthase F0, B subunit
785	 40.60	0	818354..818917	+	187	183220212	atpH	LEPBI_I0804	-	ATP synthase F1, delta subunit
786	 43.43	+1	818914..820428	+	504	183220213	atpA	LEPBI_I0805	-	ATP synthase F1, alpha subunit
787	 43.22	+1	820440..821309	+	289	183220214	atpG	LEPBI_I0806	-	ATP synthase F1, gamma subunit
788	 42.93	+1	821331..822737	+	468	183220215	atpD	LEPBI_I0807	-	ATP synthase F1, beta subunit
789	 44.62	+1	822743..823123	+	126	183220216	atpC	LEPBI_I0808	-	ATP synthase F1, epsilon subunit
790	 41.75	0	823171..823467	+	98	183220217	-	LEPBI_I0809	-	hypothetical protein
791	 38.54	0	823477..825801	+	774	183220218	-	LEPBI_I0810	-	hypothetical protein
792	 37.38	0	825803..827902	+	699	183220219	-	LEPBI_I0811	-	hypothetical protein
793	 32.62	-1	827912..829309	+	465	183220220	-	LEPBI_I0812	-	MBOAT family acyl-CoA thioesterase
794	 33.81	-1	829333..830376	+	347	183220221	-	LEPBI_I0813	-	hypothetical protein
795	 38.17	0	830338..830523	-	61	183220222	-	LEPBI_I0814	-	hypothetical protein
796	 42.31	0	830549..831673	-	374	183220223	carA	LEPBI_I0815	-	carbamoyl-phosphate synthase, small chain (carbamoyl-phosphate synthetase glutamine chain)
797	 44.16	+1	831681..832271	-	196	183220224	-	LEPBI_I0816	-	hypothetical protein
798	 44.74	+1	832426..833328	+	300	183220225	ompL1	LEPBI_Ia0817	-	Outer membrane protein OmpL1; putative signal peptide
799	 38.51	0	833389..833697	-	102	183220226	-	LEPBI_I0819	-	putative pterin-4-alpha-carbinolamine dehydratase
800	 36.71	0	833694..834581	-	295	183220227	-	LEPBI_I0820	-	DMT superfamily permease
801	 37.44	0	834571..835227	-	218	183220228	ung	LEPBI_I0821	-	uracil-DNA glycosylase
802	 38.45	0	835217..836428	-	403	183220229	-	LEPBI_I0822	-	hypothetical protein
803	 38.25	0	836472..837386	+	304	183220230	-	LEPBI_I0823	-	DMT superfamily permease
804	 36.45	0	837427..838485	-	352	183220231	-	LEPBI_I0824	-	putative permease protein
805	 40.04	0	838482..839003	-	173	183220232	-	LEPBI_I0825	-	putative cAMP-dependent protein kinase
806	 39.97	0	839044..839751	+	235	183220233	bioD	LEPBI_I0826	-	dethiobiotin synthetase
807	 38.06	0	839741..841072	+	443	183220234	bioA	LEPBI_I0827	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
808	 42.71	0	841130..842185	+	351	183220235	bioB	LEPBI_I0828	-	biotin synthase (biotin synthetase)
809	 40.40	0	842236..843792	+	518	183220236	-	LEPBI_I0829	-	putative sodium/galactoside symporter
810	 41.67	0	843817..843996	+	59	183220237	-	LEPBI_I0830	-	hypothetical protein
811	 39.12	0	844016..844741	+	241	183220238	-	LEPBI_I0831	-	putative hydrolase; putative signal peptide
812	 39.98	0	844744..845661	+	305	183220239	serB	LEPBI_I0832	-	phosphoserine phosphatase
813	 38.29	0	845632..848133	-	833	183220240	mutS	LEPBI_I0833	-	DNA mismatch repair protein MutS
814	 42.97	+1	848138..848770	-	210	183220241	trpF	LEPBI_I0834	-	N-(5'-phosphoribosyl)anthranilate isomerase (PRAI)
815	 39.45	0	848787..849407	-	206	183220242	-	LEPBI_I0835	-	TetR family transcriptional regulator
816	 40.99	0	849470..850684	-	404	183220243	folC	LEPBI_I0836	-	FolC bifunctional protein: folylpolyglutamate synthase/tetrahydrofolate ynthase
817	 41.19	0	850716..851606	-	296	183220244	aroE	LEPBI_I0837	-	shikimate dehydrogenase
818	 39.13	0	851682..852026	+	114	183220245	-	LEPBI_I0838	-	hypothetical protein
819	 35.94	0	851934..852776	-	280	183220246	-	LEPBI_I0839	-	putative glycosyl transferase
820	 43.35	+1	852784..853482	-	232	183220247	-	LEPBI_I0840	-	hypothetical protein
821	 45.49	+1	853519..854892	+	457	183220248	-	LEPBI_I0841	-	hypothetical protein
822	 37.91	0	854889..856046	+	385	183220249	rpsA1	LEPBI_I0842	-	30S ribosomal protein S1
823	 45.30	+1	856054..856521	+	155	183220250	-	LEPBI_I0843	-	SpoU family tRNA/rRNA methyltransferase
824	 39.61	0	856570..857238	+	222	183220251	-	LEPBI_I0844	-	hypothetical protein
825	 39.05	0	857245..859239	+	664	183220252	uvrB	LEPBI_I0845	-	excinuclease ABC subunit B
826	 39.02	0	859253..861625	+	790	183220253	lon	LEPBI_I0846	-	DNA-binding ATP-dependent protease La
827	 39.94	0	861622..864105	+	827	183220254	pbp1	LEPBI_I0847	-	penicillin-binding protein 1 (PBP-1a; PBP1a)
828	 36.07	0	864062..865486	-	474	183220255	-	LEPBI_I0848	-	ABC-type transport system, periplasmic component
829	 38.69	0	865489..867372	+	627	183220256	-	LEPBI_I0849	-	ABC-type transport system, ATP binding protein and permease; putative membrane protein; putative signal peptide
830	 37.96	0	867479..867889	-	136	183220257	-	LEPBI_I0850	-	hypothetical protein
831	 39.12	0	867961..869463	+	500	183220258	-	LEPBI_I0851	-	putative acetyl-CoA hydrolase/transferase
832	 35.65	0	869460..870713	+	417	183220259	-	LEPBI_I0852	-	putative lipoprotein
833	 38.84	0	870710..871672	-	320	183220260	-	LEPBI_I0853	-	hypothetical protein
834	 36.59	0	871671..871793	+	40	183220261	-	LEPBI_I0854	-	hypothetical protein
835	 40.37	0	871849..872118	+	89	183220262	-	LEPBI_I0855	-	hypothetical protein
836	 36.66	0	872123..873535	+	470	183220263	-	LEPBI_I0856	-	hypothetical protein
837	 42.74	0	873513..876689	+	1058	183220264	-	LEPBI_I0857	-	RND family cation efflux system
838	 47.13	+2	876804..877586	-	260	183220265	-	LEPBI_I0858	-	hypothetical protein
839	 45.60	+1	877749..878555	-	268	183220266	-	LEPBI_I0859	-	hypothetical protein
840	 44.74	+1	878596..879489	-	297	183220267	-	LEPBI_I0860	-	hypothetical protein
841	 39.92	0	879548..881929	-	793	183220268	-	LEPBI_I0861	-	putative two-component sensor protein kinase; putative membrane protein
842	 42.92	+1	882033..882752	+	239	183220269	-	LEPBI_I0862	-	putative transglycosylase
843	 39.98	0	882823..884025	+	400	183220270	-	LEPBI_I0863	-	hypothetical protein
844	 39.99	0	884028..886550	+	840	183220271	-	LEPBI_Ia0863	-	penicillin G acylase; putative signal peptide
845	 40.98	0	886630..887793	+	387	183220272	-	LEPBI_I0867	-	putative signal peptide
846	 36.67	0	887785..889074	-	429	183220273	-	LEPBI_I0868	-	hypothetical protein
38.82	MEAN

4.08	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.