IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
608	 30.49	-2	624961..625488	+	175	183220035	-	LEPBI_I0621	-	hypothetical protein
609	 34.74	0	625485..626408	+	307	183220036	-	LEPBI_I0622	-	alpha/beta family hydrolase
610	 35.88	0	626405..627112	+	235	183220037	-	LEPBI_I0623	-	SDR family dehydrogenase
611	 36.78	0	627114..627635	-	173	183220038	-	LEPBI_I0624	-	putative cyclic-nucleotide binding protein
612	 37.24	0	627625..628059	-	144	183220039	-	LEPBI_I0625	-	putative cyclic nucleotide-binding protein
613	 34.88	0	628059..629999	-	646	183220040	-	LEPBI_I0626	-	ankyrin repeat-containing protein
614	 38.16	0	629996..631549	-	517	183220041	-	LEPBI_I0627	-	M23 family metalloendopeptidase
615	 37.19	0	631601..632119	-	172	183220042	-	LEPBI_I0628	-	LuxR family transcriptional regulator
616	 42.24	0	632185..632577	+	130	183220043	-	LEPBI_I0629	-	hypothetical protein
617	 33.52	-1	632590..634677	-	695	183220044	-	LEPBI_I0631	-	putative adenylate cyclase
618	 36.09	0	634674..638411	-	1245	183220045	-	LEPBI_I0632	-	putative adenylate cyclase; putative membrane protein; putative signal peptide
619	 35.74	0	638462..639460	-	332	183220046	-	LEPBI_I0633	-	putative DNA repair photolyase
620	 37.72	0	639453..640319	-	288	183220047	-	LEPBI_I0634	-	hypothetical protein
621	 37.76	0	640416..640889	+	157	183220048	-	LEPBI_I0635	-	putative glutathione peroxidase
622	 38.48	0	640933..641748	+	271	183220049	-	LEPBI_I0636	-	putative signal peptide
623	 41.50	0	641764..644346	+	860	183220050	mrcA	LEPBI_I0637	-	penicillin-binding protein 1A (PBP-1a; PBP1a)
624	 36.07	0	644347..645333	+	328	183220051	-	LEPBI_I0638	-	hypothetical protein
625	 40.34	0	645333..645803	+	156	183220052	-	LEPBI_I0639	-	hypothetical protein
626	 36.34	0	646210..646542	+	110	183220053	-	LEPBI_I0640	-	hypothetical protein
627	 32.50	-1	647104..647343	+	79	183220054	-	LEPBI_I0641	-	putative nucleotidyltransferase protein
628	 26.78	-2	647333..647683	+	116	183220055	-	LEPBI_I0642	-	putative nucleotidyltransferase
629	 35.38	0	648348..648737	+	129	183220056	-	LEPBI_I0643	-	hypothetical protein
630	 39.85	0	648747..649559	+	270	183220057	-	LEPBI_I0644	-	putative transketolase (TK)
631	 37.81	0	649608..650501	+	297	183220058	-	LEPBI_I0645	-	hypothetical protein
632	 35.43	0	650505..651458	+	317	183220059	ispA2	LEPBI_I0646	-	octoprenyl-diphosphate synthase (octaprenyl pyrophosphate synthetase; OPP synthetase)
633	 35.89	0	651483..653669	-	728	183220060	-	LEPBI_I0647	-	putative two-component sensor protein; putative membrane protein; putative signal peptide
634	 41.39	0	653692..654411	-	239	183220061	-	LEPBI_I0648	-	hypothetical protein
635	 41.43	0	654491..656305	+	604	183220062	-	LEPBI_I0649	-	putative voltage-gated ClC-type chloride channel eriC; putative membrane protein
636	 35.21	0	656302..656886	+	194	183220063	-	LEPBI_I0650	-	putative signal peptide
637	 35.48	0	656888..658474	+	528	183220064	-	LEPBI_I0651	-	hypothetical protein
638	 43.11	+1	658471..659421	+	316	183220065	-	LEPBI_I0652	-	putative alpha-L-glutamate ligase
639	 44.44	+1	659431..659943	-	170	183220066	-	LEPBI_I0653	-	hypothetical protein
640	 42.50	0	660028..660900	+	290	183220067	-	LEPBI_I0654	-	putative nucleoside triphosphate pyrophosphohydrolase and pyrophosphatase MazG
641	 40.46	0	660937..661329	+	130	183220068	-	LEPBI_I0655	-	hypothetical protein
642	 32.70	-1	661330..661800	+	156	183220069	-	LEPBI_I0656	-	hypothetical protein
643	 42.97	+1	661934..662992	-	352	183220070	lpxD2	LEPBI_I0657	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
644	 43.61	+1	663086..663523	-	145	183220071	-	LEPBI_I0658	-	hypothetical protein
645	 45.64	+1	663605..664246	-	213	183220072	-	LEPBI_I0659	-	putative riboflavin biosynthesis protein RibD:riboflavin-specific deaminase
646	 42.26	0	664552..665907	+	451	183220073	-	LEPBI_I0660	-	major facilitator superfamily permease
647	 39.47	0	665904..666131	+	75	183220074	-	LEPBI_I0661	-	hypothetical protein
648	 39.01	0	666156..666965	-	269	183220075	-	LEPBI_I0662	-	putative signal peptide
649	 46.23	+1	667034..668080	-	348	183220076	-	LEPBI_I0663	-	putative triacylglycerol lipase
650	 39.77	0	668080..669570	-	496	183220077	-	LEPBI_I0664	-	hypothetical protein
651	 35.76	0	669578..670567	-	329	183220078	-	LEPBI_I0665	-	hypothetical protein
652	 41.76	0	670631..671413	+	260	183220079	-	LEPBI_I0666	-	hypothetical protein
653	 38.29	0	671416..671778	-	120	183220080	-	LEPBI_I0667	-	putative signal peptide
654	 38.36	0	671810..673063	-	417	183220081	-	LEPBI_I0668	-	major facilitator superfamily permease
655	 40.68	0	673067..673747	-	226	183220082	hmuO	LEPBI_I0669	-	Heme oxygenase
656	 44.39	+1	673828..674958	-	376	183220083	-	LEPBI_I0670	-	hypothetical protein
657	 38.74	0	674955..675731	-	258	183220084	-	LEPBI_I0671	-	hypothetical protein
658	 37.04	0	675974..677401	-	475	183220085	-	LEPBI_I0673	-	hypothetical protein
659	 37.65	0	677667..680495	-	942	183220086	polA	LEPBI_I0674	-	DNA polymerase I (POL I)
660	 38.66	0	680492..681598	-	368	183220087	-	LEPBI_I0675	-	glycosyl transferase
661	 43.33	+1	681600..682229	-	209	183220088	-	LEPBI_I0676	-	hypothetical protein
662	 42.86	0	682296..683849	-	517	183220089	gltX	LEPBI_I0677	-	glutamyl-tRNA synthetase (glutamate--tRNA ligase; GluRS)
663	 35.97	0	683846..684718	-	290	183220090	-	LEPBI_I0678	-	hypothetical protein
664	 39.11	0	684784..686169	+	461	183220091	gyrA2	LEPBI_I0679	-	DNA gyrase/topoisomerase, type IV, subunit A
665	 40.67	0	686176..688302	+	708	183220092	gyrB2	LEPBI_I0680	-	DNA gyrase/topoisomerase, type IIA, subunit B
666	 40.82	0	688380..690368	+	662	183220093	-	LEPBI_I0681	-	putative penicillin binding protein, beta-lactamase class C
667	 37.88	0	690465..690926	-	153	183220094	-	LEPBI_I0682	-	hypothetical protein
668	 38.38	0	690939..691334	-	131	183220095	-	LEPBI_I0683	-	putative lipoprotein; putative signal peptide
669	 41.73	0	691394..692203	-	269	183220096	-	LEPBI_I0684	-	hypothetical protein
670	 39.52	0	692347..694287	+	646	183220097	-	LEPBI_I0685	-	hypothetical protein
671	 39.45	0	694388..695728	-	446	183220098	-	LEPBI_I0686	-	hypothetical protein
672	 39.92	0	695730..696503	-	257	183220099	-	LEPBI_I0687	-	oxidoreductase
673	 37.53	0	696500..696928	-	142	183220100	rimL	LEPBI_I0688	-	ribosomal-protein-alanine acetyltransferase
674	 41.29	0	696979..697896	+	305	183220101	-	LEPBI_I0689	-	hypothetical protein
675	 41.32	0	697908..698834	+	308	183220102	-	LEPBI_I0690	-	DNA processing chain DprA
676	 47.15	+2	698824..699858	-	344	183220103	-	LEPBI_I0691	-	putative cation exchanger; putative membrane protein
677	 40.71	0	699875..700498	+	207	183220104	-	LEPBI_I0692	-	hypothetical protein
678	 44.18	+1	700693..702960	-	755	183220105	-	LEPBI_I0693	-	lysine decarboxylase
679	 39.89	0	703009..705327	-	772	183220106	-	LEPBI_I0694	-	hypothetical protein
680	 43.69	+1	705324..706598	-	424	183220107	-	LEPBI_I0695	-	putative valine--pyruvate transaminase
681	 37.81	0	706732..707826	+	364	183220108	-	LEPBI_I0696	-	DegT/DnrJ/EryC1/StrS family aminotransferase
682	 39.09	0	707926..708984	+	352	183220109	-	LEPBI_I0697	-	hypothetical protein
683	 40.03	0	708996..709607	-	203	183220110	-	LEPBI_I0698	-	hypothetical protein
684	 35.49	0	709836..710159	+	107	183220111	-	LEPBI_I0699	-	putative divalent ion tolerance protein CutA1; cytochrome c biogenesis
685	 35.50	0	710129..710866	-	245	183220112	-	LEPBI_I0700	-	hypothetical protein
686	 36.48	0	710967..712172	+	401	183220113	-	LEPBI_I0701	-	M23B family peptidase
687	 34.49	-1	712169..713377	+	402	183220114	-	LEPBI_I0702	-	M23B family peptidase
688	 43.47	+1	713540..713914	+	124	183220115	-	LEPBI_I0703	-	hypothetical protein
689	 35.96	0	713911..715167	-	418	183220116	-	LEPBI_I0704	-	putative signal peptide
690	 33.57	-1	715174..716013	-	279	183220117	-	LEPBI_I0705	-	hypothetical protein
691	 37.62	0	716149..717012	+	287	183220118	-	LEPBI_I0706	-	hypothetical protein
692	 43.86	+1	717252..718571	-	439	183220119	-	LEPBI_I0707	-	putative acetyl-CoA acetyltransferase (acetoacetyl-CoA thiolase); putative signal peptide
693	 44.51	+1	718620..719621	-	333	183220120	ilvC	LEPBI_I0708	-	ketol-acid reductoisomerase
694	 43.97	+1	719914..720261	+	115	183220121	-	LEPBI_I0709	-	hypothetical protein
695	 41.37	0	720266..720850	+	194	183220122	-	LEPBI_I0710	-	hypothetical protein
696	 35.65	0	720867..721556	+	229	183220123	-	LEPBI_I0711	-	hypothetical protein
697	 36.92	0	721616..722089	+	157	183220124	-	LEPBI_I0712	-	putative protein with phosphopantetheine attachment site
698	 41.14	0	722166..723869	-	567	183220125	-	LEPBI_I0713	-	putative phosphoserine phosphatase; putative membrane protein
699	 38.39	0	723898..725775	-	625	183220126	-	LEPBI_I0714	-	ABC-type transport system, ATP binding protein
700	 37.80	0	725815..729309	-	1164	183220127	-	LEPBI_I0715	-	putative two-component sensor protein
701	 37.93	0	729363..731975	+	870	183220128	-	LEPBI_I0716	-	putative signal peptide
702	 40.77	0	732192..733562	+	456	183220129	-	LEPBI_I0717	-	hemolysin-related CBS regulatory domain
703	 44.26	+1	733563..734093	+	176	183220130	dfpA	LEPBI_I0718	-	phosphopantothenoylcysteine decarboxylase (PPCDC; CoaC)
704	 40.56	0	734090..734767	+	225	183220131	dfpB	LEPBI_I0719	-	phosphopantothenate--cysteine ligase
705	 35.01	0	734753..735109	-	118	183220132	-	LEPBI_I0720	-	hypothetical protein
706	 41.67	0	735265..736020	-	251	183220133	-	LEPBI_I0721	-	putative NAD-dependent deacetylase
707	 40.85	0	736095..737264	+	389	183220134	bioF	LEPBI_I0722	-	8-amino-7-oxononanoate synthase
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.