IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
530	 40.37	0	536179..536931	-	250	183219957	-	LEPBI_I0539	-	SDR family dehydrogenase
531	 40.72	0	536983..537483	+	166	183219958	-	LEPBI_I0540	-	hypothetical protein
532	 35.77	0	537485..538963	+	492	183219959	-	LEPBI_I0541	-	putative alginate o-acetyltransferase; putative membrane protein
533	 34.43	-1	538973..540070	+	365	183219960	-	LEPBI_I0542	-	hypothetical protein
534	 41.88	0	540043..540639	-	198	183219961	-	LEPBI_I0543	-	hypothetical protein
535	 35.53	0	540692..541876	-	394	183219962	-	LEPBI_I0544	-	hypothetical protein
536	 34.02	-1	541873..543774	-	633	183219963	-	LEPBI_I0545	-	hypothetical protein
537	 36.46	0	543771..545624	-	617	183219964	-	LEPBI_I0546	-	adenylate/guanylate cyclase family protein 3
538	 40.67	0	545702..547009	-	435	183219965	-	LEPBI_I0547	-	hypothetical protein
539	 45.63	+1	547009..547569	-	186	183219966	-	LEPBI_I0548	-	putative signal peptide
540	 44.53	+1	547619..548413	-	264	183219967	truA	LEPBI_I0549	-	tRNA pseudouridine synthase A
541	 44.03	+1	548418..549296	-	292	183219968	-	LEPBI_I0550	-	hypothetical protein
542	 40.49	0	549448..550551	+	367	183219969	-	LEPBI_I0551	-	putative signal peptide
543	 37.31	0	550648..551451	+	267	183219970	-	LEPBI_I0552	-	putative phospholipid/glycerol acyltransferase
544	 39.84	0	551448..552446	-	332	183219971	-	LEPBI_I0553	-	putative tyrosine specific protein phosphatase
545	 37.38	0	552436..553818	-	460	183219972	-	LEPBI_I0554	-	hypothetical protein
546	 42.54	0	553865..554179	+	104	183219973	-	LEPBI_I0555	-	hypothetical protein
547	 35.78	0	554159..556159	-	666	183219974	-	LEPBI_I0556	-	phosphoglycerol transferase
548	 41.58	0	556255..557697	+	480	183219975	fabG6	LEPBI_I0557	-	biotin carboxylase (A subunit of acetyl-CoA carboxylase; ACC)
549	 41.96	0	557704..558213	+	169	183219976	-	LEPBI_I0558	-	putative biotin binding protein
550	 42.27	0	558286..559773	+	495	183219977	-	LEPBI_I0559	-	putative signal peptide
551	 44.30	+1	559791..560474	+	227	183219978	-	LEPBI_I0560	-	putative lipoprotein
552	 39.72	0	560597..561316	+	239	183219979	-	LEPBI_I0561	-	hypothetical protein
553	 33.80	-1	561286..561927	-	213	183219980	-	LEPBI_I0562	-	putative GTP-binding protein EngB
554	 33.57	-1	561933..562787	-	284	183219981	-	LEPBI_I0563	-	hypothetical protein
555	 32.44	-1	562898..563233	-	111	183219982	-	LEPBI_I0564	-	hypothetical protein
556	 36.24	0	563230..565191	-	653	183219983	-	LEPBI_I0565	-	putative phosphoserine phosphatase RsbU (sigma factor sigB regulation protein RsbU)
557	 37.30	0	565407..567524	+	705	183219984	-	LEPBI_I0566	-	putative two-component sensor protein
558	 39.95	0	567566..568366	-	266	183219985	thiD	LEPBI_I0567	-	phosphomethylpyrimidine kinase (HMP-phosphate kinase; HMP-P kinase)
559	 37.41	0	568412..568705	-	97	183219986	-	LEPBI_I0568	-	methylated DNA-protein cysteine methyltransferase domain-containing protein
560	 36.48	0	568773..569630	+	285	183219987	-	LEPBI_I0569	-	hypothetical protein
561	 33.33	-1	569673..570074	+	133	183219988	-	LEPBI_I0570	-	putative signal peptide
562	 37.04	0	570110..571378	+	422	183219989	-	LEPBI_I0571	-	putative signal peptide
563	 39.40	0	571485..574796	-	1103	183219990	-	LEPBI_I0572	-	RND family transporter
564	 38.80	0	574789..575538	-	249	183219991	-	LEPBI_I0573	-	putative signal peptide
565	 37.60	0	575540..576547	-	335	183219992	-	LEPBI_I0574	-	hypothetical protein
566	 36.58	0	576549..577967	-	472	183219993	-	LEPBI_I0575	-	hypothetical protein
567	 41.09	0	578070..578456	-	128	183219994	-	LEPBI_I0576	-	hypothetical protein
568	 44.74	+1	578716..579057	-	113	183219995	-	LEPBI_I0577	-	hypothetical protein
569	 41.05	0	579167..580579	-	470	183219996	-	LEPBI_I0578	-	putative FAD dehydrogenase
570	 39.49	0	580590..582734	-	714	183219997	ppk	LEPBI_I0579	-	polyphosphate kinase (polyphosphoric acid kinase; ATP-polyphosphate phosphotransferase)
571	 40.56	0	582760..584682	+	640	183219998	fliD	LEPBI_I0580	-	flagellar hook-associated protein 2
572	 38.21	0	584679..585641	+	320	183219999	-	LEPBI_I0581	-	hypothetical protein
573	 39.35	0	585638..585853	-	71	183220000	-	LEPBI_I0582	-	hypothetical protein
574	 37.30	0	585948..586805	+	285	183220001	-	LEPBI_I0583	-	putative dehalogenase-like hydrolase
575	 40.85	0	586779..587630	-	283	183220002	-	LEPBI_I0584	-	putative S-adenosyl-L-methionine-dependent methyltransferase
576	 44.48	+1	587723..588583	+	286	183220003	dapF	LEPBI_I0585	-	diaminopimelate epimerase (DAP epimerase)
577	 42.32	0	588615..589337	-	240	183220004	-	LEPBI_I0586	-	putative acyltransferase
578	 42.92	+1	589339..589776	-	145	183220005	-	LEPBI_I0587	-	hypothetical protein
579	 40.66	0	589858..590376	+	172	183220006	-	LEPBI_I0589	-	hypothetical protein
580	 41.59	0	590387..590701	-	104	183220007	-	LEPBI_I0590	-	hypothetical protein
581	 37.38	0	590724..592304	-	526	183220008	-	LEPBI_I0591	-	putative adenylate cyclase; putative membrane protein; putative signal peptide
582	 38.60	0	592312..593697	-	461	183220009	-	LEPBI_I0592	-	major facilitator superfamily permease
583	 36.48	0	593799..595610	-	603	183220010	-	LEPBI_I0593	-	hypothetical protein
584	 36.26	0	595642..597933	-	763	183220011	-	LEPBI_I0594	-	hypothetical protein
585	 38.59	0	598089..599780	+	563	183220012	-	LEPBI_I0595	-	putative aerotaxis sensor receptor; putative membrane protein
586	 43.68	+1	599810..600244	+	144	183220013	-	LEPBI_I0596	-	hypothetical protein
587	 42.18	0	600380..600820	-	146	183220014	-	LEPBI_I0597	-	hypothetical protein
588	 43.60	+1	600825..602090	-	421	183220015	fadA2	LEPBI_I0598	-	3-ketoacyl-CoA thiolase
589	 43.33	+1	602104..603414	-	436	183220016	fadB2	LEPBI_I0599	-	3-hydroxyacyl-CoA dehydrogenase, NAD binding FadB; putative signal peptide
590	 30.23	-2	604024..604635	+	203	183220017	-	LEPBI_I0600	-	hypothetical protein
591	 32.73	-1	604632..605132	+	166	183220018	-	LEPBI_I0601	-	hypothetical protein
592	 37.42	0	605329..605817	-	162	183220019	-	LEPBI_I0602	-	hypothetical protein
593	 40.80	0	605848..606798	-	316	183220020	dusC	LEPBI_I0604	-	tRNA-dihydrouridine synthase C
594	 39.51	0	606806..608569	-	587	183220021	ilvI	LEPBI_I0605	-	acetolactate synthase large subunit
595	 40.02	0	608599..610212	-	537	183220022	-	LEPBI_I0606	-	putative FAD binding dehydrogenase
596	 35.78	0	610619..611476	+	285	183220023	-	LEPBI_I0607	-	hypothetical protein
597	 31.90	-1	611478..613922	+	814	183220024	-	LEPBI_I0608	-	hypothetical protein
598	 37.16	0	613929..614477	+	182	183220025	-	LEPBI_I0609	-	putative NADPH-dependent FMN reductase
599	 38.92	0	615071..616108	+	345	183220026	-	LEPBI_I0611	-	hypothetical protein
600	 33.81	-1	616127..617809	+	560	183220027	-	LEPBI_I0612	-	hypothetical protein
601	 37.10	0	617813..618874	+	353	183220028	-	LEPBI_I0614	-	hypothetical protein
602	 35.20	0	618941..619528	+	195	183220029	-	LEPBI_I0615	-	putative oxidoreductase
603	 33.67	-1	619530..620426	+	298	183220030	-	LEPBI_I0616	-	alpha/beta family hydrolase
604	 32.60	-1	620428..620976	+	182	183220031	-	LEPBI_I0617	-	PadR family transcriptional regulator
605	 33.80	-1	621042..623192	+	716	183220032	-	LEPBI_I0618	-	putative two-component sensor protein; putative signal peptide
606	 31.79	-1	623380..624351	+	323	183220033	-	LEPBI_I0619	-	hypothetical protein
607	 33.17	-1	624360..624971	+	203	183220034	-	LEPBI_I0620	-	hypothetical protein
608	 30.49	-2	624961..625488	+	175	183220035	-	LEPBI_I0621	-	hypothetical protein
609	 34.74	0	625485..626408	+	307	183220036	-	LEPBI_I0622	-	alpha/beta family hydrolase
610	 35.88	0	626405..627112	+	235	183220037	-	LEPBI_I0623	-	SDR family dehydrogenase
611	 36.78	0	627114..627635	-	173	183220038	-	LEPBI_I0624	-	putative cyclic-nucleotide binding protein
612	 37.24	0	627625..628059	-	144	183220039	-	LEPBI_I0625	-	putative cyclic nucleotide-binding protein
613	 34.88	0	628059..629999	-	646	183220040	-	LEPBI_I0626	-	ankyrin repeat-containing protein
614	 38.16	0	629996..631549	-	517	183220041	-	LEPBI_I0627	-	M23 family metalloendopeptidase
615	 37.19	0	631601..632119	-	172	183220042	-	LEPBI_I0628	-	LuxR family transcriptional regulator
616	 42.24	0	632185..632577	+	130	183220043	-	LEPBI_I0629	-	hypothetical protein
617	 33.52	-1	632590..634677	-	695	183220044	-	LEPBI_I0631	-	putative adenylate cyclase
618	 36.09	0	634674..638411	-	1245	183220045	-	LEPBI_I0632	-	putative adenylate cyclase; putative membrane protein; putative signal peptide
619	 35.74	0	638462..639460	-	332	183220046	-	LEPBI_I0633	-	putative DNA repair photolyase
620	 37.72	0	639453..640319	-	288	183220047	-	LEPBI_I0634	-	hypothetical protein
621	 37.76	0	640416..640889	+	157	183220048	-	LEPBI_I0635	-	putative glutathione peroxidase
622	 38.48	0	640933..641748	+	271	183220049	-	LEPBI_I0636	-	putative signal peptide
623	 41.50	0	641764..644346	+	860	183220050	mrcA	LEPBI_I0637	-	penicillin-binding protein 1A (PBP-1a; PBP1a)
624	 36.07	0	644347..645333	+	328	183220051	-	LEPBI_I0638	-	hypothetical protein
625	 40.34	0	645333..645803	+	156	183220052	-	LEPBI_I0639	-	hypothetical protein
626	 36.34	0	646210..646542	+	110	183220053	-	LEPBI_I0640	-	hypothetical protein
627	 32.50	-1	647104..647343	+	79	183220054	-	LEPBI_I0641	-	putative nucleotidyltransferase protein
628	 26.78	-2	647333..647683	+	116	183220055	-	LEPBI_I0642	-	putative nucleotidyltransferase
629	 35.38	0	648348..648737	+	129	183220056	-	LEPBI_I0643	-	hypothetical protein
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.