IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2884	 44.53	+1	3065383..3066195	+	270	183222311	-	LEPBI_I2963	-	putative glycosyl transferase
2885	 41.51	0	3066199..3069759	-	1186	183222312	-	LEPBI_I2964	-	TPR repeat-containing protein
2886	 39.72	0	3069777..3070793	+	338	183222313	-	LEPBI_I2965	-	hypothetical protein
2887	 46.18	+1	3070839..3071165	-	108	183222314	-	LEPBI_I2966	-	putative signal peptide
2888	 44.72	+1	3071182..3072147	-	321	183222315	-	LEPBI_I2967	-	putative transketolase
2889	 43.44	+1	3072150..3073316	-	388	183222316	metK	LEPBI_I2968	-	S-adenosylmethionine synthetase
2890	 42.76	0	3073327..3074079	-	250	183222317	-	LEPBI_I2969	-	hypothetical protein
2891	 41.13	0	3074076..3074768	-	230	183222318	-	LEPBI_I2970	-	putative Ser/thr kinase-related protein
2892	 38.79	0	3074765..3075112	-	115	183222319	-	LEPBI_I2971	-	hypothetical protein
2893	 37.63	0	3075160..3076626	-	488	183222320	algI3	LEPBI_I2972	-	alginate O-acetyltransferase
2894	 38.07	0	3076756..3077262	+	168	183222321	-	LEPBI_I2973	-	putative signal peptide
2895	 37.95	0	3077314..3078375	+	353	183222322	-	LEPBI_I2974	-	hypothetical protein
2896	 39.55	0	3078420..3078773	-	117	183222323	ssbB	LEPBI_I2975	-	single-strand binding protein (SSB; helix-destabilizing protein)
2897	 38.33	0	3078927..3080426	+	499	183222324	-	LEPBI_I2976	-	putative two-component sensor and regulator
2898	 38.60	0	3080423..3080821	+	132	183222325	-	LEPBI_I2977	-	putative two-component response regulator
2899	 42.31	0	3080833..3082413	+	526	183222326	-	LEPBI_I2978	-	hypothetical protein
2900	 38.25	0	3082414..3084489	+	691	183222327	-	LEPBI_I2979	-	putative adenylate cyclase; putative membrane protein; putative signal peptide
2901	 39.08	0	3084491..3085795	-	434	183222328	-	LEPBI_I2980	-	putative amino acid permease; putative membrane protein
2902	 36.73	0	3085908..3086849	+	313	183222329	-	LEPBI_I2981	-	hypothetical protein
2903	 38.79	0	3086846..3087724	+	292	183222330	-	LEPBI_I2982	-	hypothetical protein
2904	 37.97	0	3087831..3088649	+	272	183222331	-	LEPBI_I2983	-	hypothetical protein
2905	 41.88	0	3088786..3089592	+	268	183222332	-	LEPBI_I2984	-	hypothetical protein
2906	 42.01	0	3089638..3091308	+	556	183222333	-	LEPBI_I2985	-	hypothetical protein
2907	 46.57	+1	3091447..3091650	+	67	183222334	-	LEPBI_I2987	-	hypothetical protein
2908	 45.50	+1	3091809..3094511	+	900	183222335	-	LEPBI_I2988	-	hypothetical protein
2909	 43.19	+1	3094825..3096417	-	530	183222336	pck	LEPBI_I2989	-	phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase; phosphoenolpyruvate carboxylase)(PEPCK)
2910	 43.12	+1	3096488..3097918	+	476	183222337	-	LEPBI_I2990	-	putative glycogen synthase
2911	 40.16	0	3097977..3099500	+	507	183222338	-	LEPBI_I2991	-	hypothetical protein
2912	 33.33	-1	3099740..3099880	+	46	183222339	-	LEPBI_I2992	-	hypothetical protein
2913	 38.85	0	3099987..3101399	+	470	183222340	-	LEPBI_I2993	-	hypothetical protein
2914	 37.04	0	3101541..3101918	+	125	183222341	-	LEPBI_I2994	-	hypothetical protein
2915	 37.46	0	3101915..3102787	+	290	183222342	-	LEPBI_I2995	-	hypothetical protein
2916	 37.01	0	3102755..3103651	-	298	183222343	-	LEPBI_I2996	-	putative AraC-type transcriptional regulator
2917	 39.81	0	3103819..3104667	+	282	183222344	-	LEPBI_I2997	-	hypothetical protein
2918	 34.77	0	3104758..3105942	-	394	183222345	-	LEPBI_I2998	-	hypothetical protein
2919	 38.92	0	3106119..3107621	+	500	183222346	-	LEPBI_I2999	-	hypothetical protein
2920	 30.48	-2	3107682..3108101	-	139	183222347	-	LEPBI_I3000	-	putative signal peptide
2921	 40.27	0	3108147..3108824	-	225	183222348	-	LEPBI_I3001	-	hypothetical protein
2922	 33.77	-1	3108983..3109669	+	228	183222349	-	LEPBI_I3002	-	TetR family transcriptional regulator
2923	 31.50	-1	3109662..3111185	-	507	183222350	-	LEPBI_I3003	-	hypothetical protein
2924	 35.43	0	3111277..3113466	-	729	183222351	-	LEPBI_I3004	-	putative penicillin-binding protein (peptidoglycan glycosyltransferase)
2925	 36.04	0	3113463..3118532	-	1689	183222352	-	LEPBI_I3005	-	hypothetical protein
2926	 40.82	0	3118686..3119126	+	146	183222353	-	LEPBI_I3006	-	hypothetical protein
2927	 34.93	0	3119168..3121543	+	791	183222354	-	LEPBI_I3007	-	putative sensor kinase
2928	 39.29	0	3121529..3123088	-	519	183222355	ahpF	LEPBI_I3008	-	Alkyl hydroperoxide reductase subunit F
2929	 42.02	0	3123133..3123696	-	187	183222356	ahpC1	LEPBI_I3009	-	Alkyl hydroperoxide reductase subunit C
2930	 35.51	0	3123807..3124724	-	305	183222357	-	LEPBI_I3010	-	LysR family regulatory protein
2931	 34.84	0	3124815..3126740	+	641	183222358	-	LEPBI_I3011	-	putative phosphoserine phosphatase; putative membrane protein; putative signal peptide
2932	 35.91	0	3126749..3127486	+	245	183222359	-	LEPBI_I3012	-	putative two-component response regulator
2933	 33.58	-1	3127581..3127985	+	134	183222360	-	LEPBI_I3013	-	putative signal peptide
2934	 36.82	0	3127995..3128396	+	133	183222361	-	LEPBI_I3015	-	hypothetical protein
2935	 36.84	0	3128393..3128734	+	113	183222362	-	LEPBI_I3016	-	putative signal peptide
2936	 38.54	0	3128898..3131222	+	774	183222363	-	LEPBI_I3017	-	putative signal peptide
2937	 37.10	0	3131222..3131725	+	167	183222364	-	LEPBI_I3018	-	hypothetical protein
2938	 36.75	0	3131727..3132341	+	204	183222365	exbB2	LEPBI_I3019	-	biopolymer transport ExbB protein; putative membrane protein
2939	 37.56	0	3132344..3132745	+	133	183222366	exbD3	LEPBI_I3020	-	biopolymer transport ExbD protein
2940	 38.99	0	3132742..3133395	+	217	183222367	-	LEPBI_I3021	-	putative TonB protein
2941	 30.30	-2	3133398..3135311	+	637	183222368	-	LEPBI_I3022	-	hypothetical protein
2942	 34.55	-1	3135289..3135864	-	191	183222369	-	LEPBI_I3023	-	SenC family respiratory system protein
2943	 38.97	0	3135846..3136910	-	354	183222370	-	LEPBI_I3024	-	hypothetical protein
2944	 35.58	0	3136925..3137236	-	103	183222371	-	LEPBI_I3025	-	hypothetical protein
2945	 38.25	0	3137250..3139223	-	657	183222372	-	LEPBI_I3026	-	putative signal peptide
2946	 34.13	-1	3139300..3139926	-	208	183222373	-	LEPBI_I3027	-	TetR family transcriptional regulator
2947	 37.24	0	3139923..3141869	-	648	183222374	-	LEPBI_I3028	-	ABC-type transport system, ATP-binding protein; putative membrane protein
2948	 36.19	0	3141873..3142817	-	314	183222375	-	LEPBI_I3029	-	putative permease
2949	 36.50	0	3142807..3144162	-	451	183222376	-	LEPBI_I3030	-	hypothetical protein
2950	 38.80	0	3144252..3145166	-	304	183222377	-	LEPBI_I3031	-	hypothetical protein
2951	 38.62	0	3145223..3146830	-	535	183222378	-	LEPBI_I3032	-	putative sulfate transporter family protein
2952	 35.84	0	3146861..3148534	-	557	183222379	-	LEPBI_I3033	-	AraC family transcriptional regulator
2953	 39.21	0	3148574..3149560	+	328	183222380	-	LEPBI_I3034	-	putative permease; putative membrane protein
2954	 39.27	0	3149598..3151433	+	611	183222381	-	LEPBI_I3035	-	hypothetical protein
2955	 43.11	+1	3151495..3152118	+	207	183222382	-	LEPBI_I3036	-	TetR family transcriptional regulator
2956	 36.05	0	3152115..3152888	-	257	183222383	-	LEPBI_I3037	-	putative acyltransferase
2957	 40.00	0	3153350..3153979	+	209	183222384	-	LEPBI_I3038	-	hypothetical protein
2958	 44.01	+1	3154019..3154870	+	283	183222385	-	LEPBI_I3039	-	putative signal peptide
2959	 43.95	+1	3155051..3155785	+	244	183222386	-	LEPBI_I3040	-	hypothetical protein
2960	 38.71	0	3155798..3156355	+	185	183222387	-	LEPBI_I3041	-	putative ATPase
2961	 39.08	0	3156369..3156716	+	115	183222388	-	LEPBI_I3042	-	hypothetical protein
2962	 42.60	0	3156727..3157902	-	391	183222389	-	LEPBI_I3043	-	hypothetical protein
2963	 42.18	0	3158022..3159242	+	406	183222390	-	LEPBI_I3044	-	hypothetical protein
2964	 39.58	0	3159247..3159534	+	95	183222391	-	LEPBI_I3045	-	hypothetical protein
2965	 40.60	0	3159542..3160477	+	311	183222392	-	LEPBI_I3046	-	putative adenylate/guanylate cyclase
2966	 38.97	0	3160509..3161093	+	194	183222393	-	LEPBI_I3047	-	hypothetical protein
2967	 45.14	+1	3161068..3161643	-	191	183222394	-	LEPBI_I3048	-	TetR family transcriptional regulator
2968	 40.75	0	3161770..3162780	+	336	183222395	-	LEPBI_I3049	-	hypothetical protein
2969	 40.38	0	3162777..3163202	+	141	183222396	-	LEPBI_I3050	-	hypothetical protein
2970	 39.12	0	3163199..3164839	-	546	183222397	-	LEPBI_I3051	-	putative ankyrin-like protein
2971	 43.84	+1	3164926..3165753	+	275	183222398	-	LEPBI_I3052	-	hypothetical protein
2972	 44.38	+1	3165809..3166831	+	340	183222399	-	LEPBI_I3053	-	putative L-threonine 3-dehydrogenase
2973	 39.65	0	3166930..3167721	+	263	183222400	-	LEPBI_I3054	-	hypothetical protein
2974	 42.26	0	3167763..3168356	+	197	183222401	-	LEPBI_I3055	-	hypothetical protein
2975	 44.73	+1	3168393..3169208	+	271	183222402	-	LEPBI_I3056	-	hypothetical protein
2976	 30.43	-2	3169797..3169934	-	45	183222403	-	LEPBI_I3057	-	hypothetical protein
2977	 31.45	-1	3170068..3170385	-	105	183222404	-	LEPBI_I3058	-	hypothetical protein
2978	 30.30	-2	3170571..3170768	+	65	183222405	-	LEPBI_I3059	-	hypothetical protein
2979	 39.81	0	3170765..3173140	+	791	183222406	-	LEPBI_I3060	-	hypothetical protein
2980	 38.31	0	3173480..3174664	+	394	183222407	-	LEPBI_I3061	-	hypothetical protein
2981	 37.41	0	3174936..3175082	-	48	183222408	-	LEPBI_I3062	-	hypothetical protein
2982	 35.19	0	3175118..3175816	+	232	183222409	-	LEPBI_I3063	-	hypothetical protein
2983	 30.88	-1	3176156..3176725	-	189	183222410	-	LEPBI_I3064	-	hypothetical protein
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.