IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2756	 34.52	-1	2921418..2921585	-	55	183222183	-	LEPBI_I2830	-	hypothetical protein
2757	 41.29	0	2925666..2925866	-	66	183222184	-	LEPBI_I2833	-	hypothetical protein
2758	 39.54	0	2925926..2926408	-	160	183222185	-	LEPBI_I2834	-	hypothetical protein
2759	 35.40	0	2926488..2928131	-	547	183222186	-	LEPBI_I2835	-	putative signal peptide
2760	 37.35	0	2928121..2928891	-	256	183222187	-	LEPBI_I2836	-	ABC-type transport system, binding-protein-dependent transport system, inner membrane component
2761	 34.46	-1	2928881..2929771	-	296	183222188	-	LEPBI_I2837	-	ABC-type transport system, binding-protein-dependent transport system, inner membrane component
2762	 36.80	0	2929776..2930237	-	153	183222189	ptsN	LEPBI_I2838	-	PTS system, IIA component
2763	 33.56	-1	2930273..2931163	-	296	183222190	-	LEPBI_I2839	-	hypothetical protein
2764	 35.06	0	2931176..2932330	-	384	183222191	-	LEPBI_I2840	-	hypothetical protein
2765	 37.63	0	2932343..2932621	-	92	183222192	-	LEPBI_I2841	-	hypothetical protein
2766	 41.12	0	2932700..2934241	-	513	183222193	-	LEPBI_I2842	-	glycosyltransferase
2767	 33.61	-1	2934362..2936545	+	727	183222194	-	LEPBI_I2844	-	hypothetical protein
2768	 36.99	0	2936542..2937279	+	245	183222195	motA1	LEPBI_I2845	-	chemotaxis MotA protein; putative membrane protein; putative signal peptide
2769	 34.65	-1	2937296..2938279	-	327	183222196	-	LEPBI_I2846	-	hypothetical protein
2770	 37.44	0	2938489..2938902	+	137	183222197	-	LEPBI_I2847	-	putative ribonuclease H
2771	 34.71	-1	2938899..2939261	+	120	183222198	-	LEPBI_I2848	-	hypothetical protein
2772	 38.53	0	2939295..2939717	+	140	183222199	-	LEPBI_I2849	-	ferric uptake regulation protein
2773	 33.57	-1	2939708..2941000	+	430	183222200	-	LEPBI_I2850	-	putative tRNA nucleotidyltransferase
2774	 40.33	0	2941181..2942695	+	504	183222201	-	LEPBI_I2851	-	putative signal peptide
2775	 39.66	0	2942700..2943173	+	157	183222202	-	LEPBI_I2852	-	hypothetical protein
2776	 35.12	0	2943272..2943718	-	148	183222203	-	LEPBI_I2853	-	hypothetical protein
2777	 33.08	-1	2943820..2945793	+	657	183222204	-	LEPBI_I2854	-	hypothetical protein
2778	 35.93	0	2946131..2947054	+	307	183222205	-	LEPBI_I2855	-	putative cytochrome c551 peroxidase
2779	 37.80	0	2947417..2947998	+	193	183222206	-	LEPBI_I2857	-	hypothetical protein
2780	 37.73	0	2948050..2948913	+	287	183222207	-	LEPBI_I2858	-	hypothetical protein
2781	 37.18	0	2949090..2951846	-	918	183222208	secA	LEPBI_I2859	-	preprotein translocase SecA subunit
2782	 36.67	0	2951857..2952546	-	229	183222209	-	LEPBI_I2860	-	putative glutamine amidotransferase, class-I
2783	 40.20	0	2952543..2953226	-	227	183222210	-	LEPBI_I2861	-	hypothetical protein
2784	 40.43	0	2953270..2953734	+	154	183222211	-	LEPBI_I2862	-	hypothetical protein
2785	 37.96	0	2953890..2955164	+	424	183222212	-	LEPBI_I2863	-	hypothetical protein
2786	 38.10	0	2955161..2955433	-	90	183222213	-	LEPBI_I2864	-	hypothetical protein
2787	 38.62	0	2955453..2956946	+	497	183222214	-	LEPBI_I2865	-	hypothetical protein
2788	 39.15	0	2956939..2957712	+	257	183222215	-	LEPBI_I2866	-	ABC-type transport system, ATP-binding protein
2789	 45.11	+1	2957740..2961468	-	1242	183222216	-	LEPBI_I2867	-	hypothetical protein
2790	 40.21	0	2961712..2962932	+	406	183222217	-	LEPBI_I2868	-	hypothetical protein
2791	 39.36	0	2962929..2963891	+	320	183222218	-	LEPBI_I2869	-	putative nucleoside-diphosphate-sugar epimerase
2792	 42.18	0	2963903..2964727	+	274	183222219	-	LEPBI_I2870	-	hypothetical protein
2793	 38.99	0	2965000..2965335	+	111	183222220	arsR1	LEPBI_I2871	-	arsenical resistance operon repressor
2794	 39.29	0	2965337..2965756	+	139	183222221	arsC	LEPBI_I2872	-	arsenate reductase (arsenical pump modifier)
2795	 35.79	0	2965758..2966327	+	189	183222222	-	LEPBI_I2873	-	hypothetical protein
2796	 39.52	0	2966328..2967362	+	344	183222223	arsB	LEPBI_I2874	-	arsenite efflux pump ACR3; putative membrane protein
2797	 42.81	0	2967517..2968719	-	400	183222224	-	LEPBI_I2875	-	putative NADH oxidoreductase
2798	 37.49	0	2968826..2969836	-	336	183222225	-	LEPBI_I2876	-	hypothetical protein
2799	 42.35	0	2969877..2970464	-	195	183222226	-	LEPBI_I2877	-	hypothetical protein
2800	 38.82	0	2970512..2972332	-	606	183222227	-	LEPBI_I2878	-	putative two-component sensor protein
2801	 39.70	0	2972568..2973038	-	156	183222228	-	LEPBI_I2879	-	putative acetyltransferase
2802	 44.64	+1	2973257..2974423	-	388	183222229	acdA4	LEPBI_I2880	-	Acyl-CoA dehydrogenase
2803	 39.66	0	2974543..2975553	+	336	183222230	-	LEPBI_I2881	-	alpha/beta family hydrolase
2804	 44.40	+1	2975618..2976322	+	234	183222231	-	LEPBI_I2882	-	SDR family dehydrogenase/reductase
2805	 32.74	-1	2976535..2976702	+	55	183222232	-	LEPBI_I2883	-	hypothetical protein
2806	 43.02	+1	2976955..2977470	-	171	183222233	-	LEPBI_I2884	-	hypothetical protein
2807	 44.16	+1	2977467..2977817	-	116	183222234	arsR2	LEPBI_I2885	-	arsenical resistance operon repressor
2808	 34.26	-1	2978091..2978846	+	251	183222235	-	LEPBI_I2886	-	hypothetical protein
2809	 39.78	0	2978960..2979331	+	123	183222236	-	LEPBI_I2887	-	hypothetical protein
2810	 38.63	0	2979347..2979799	+	150	183222237	-	LEPBI_I2888	-	hypothetical protein
2811	 32.92	-1	2979894..2980613	+	239	183222238	-	LEPBI_I2889	-	glycosyl transferase family protein
2812	 36.97	0	2980606..2981898	-	430	183222239	-	LEPBI_I2890	-	adenylate cyclase family protein
2813	 38.53	0	2981989..2983200	-	403	183222240	icd	LEPBI_I2891	-	isocitrate dehydrogenase (NADP)
2814	 36.86	0	2983246..2983812	-	188	183222241	-	LEPBI_I2892	-	hypothetical protein
2815	 46.13	+1	2983892..2984266	+	124	183222242	-	LEPBI_I2893	-	hypothetical protein
2816	 38.89	0	2984317..2985360	+	347	183222243	-	LEPBI_I2894	-	putative signal peptide
2817	 41.98	0	2985440..2986387	-	315	183222244	-	LEPBI_I2895	-	putative metallo-beta-lactamase superfamily protein
2818	 37.54	0	2986430..2987095	+	221	183222245	trmB	LEPBI_I2896	-	tRNA (guanine-N(7)-)-methyltransferase (tRNA(m7G46)-methyltransferase)
2819	 37.62	0	2987165..2990758	-	1197	183222246	-	LEPBI_I2897	-	TPR repeat-containing signal peptide
2820	 38.35	0	2990755..2992368	-	537	183222247	-	LEPBI_I2898	-	hypothetical protein
2821	 38.07	0	2992365..2993336	-	323	183222248	-	LEPBI_I2899	-	putative outer membrane lipoprotein Qlp42
2822	 42.77	0	2993402..2994355	-	317	183222249	-	LEPBI_I2900	-	putative GTPase
2823	 37.84	0	2994390..2996231	+	613	183222250	-	LEPBI_I2901	-	two-component sensor histidine kinase
2824	 37.76	0	2996236..2997342	-	368	183222251	-	LEPBI_I2902	-	fatty acid desaturase family proteiin
2825	 39.36	0	2997358..2998518	+	386	183222252	-	LEPBI_I2903	-	hypothetical protein
2826	 41.09	0	2998555..2999070	+	171	183222253	tpx	LEPBI_I2904	-	Thiol peroxidase
2827	 35.41	0	2999054..3001363	-	769	183222254	-	LEPBI_I2905	-	putative ATPase
2828	 39.19	0	3001360..3002451	-	363	183222255	-	LEPBI_I2906	-	hypothetical protein
2829	 41.17	0	3002528..3003676	-	382	183222256	-	LEPBI_I2907	-	putative formyl-coenzyme A transferase (Formyl-CoA transferase)
2830	 44.58	+1	3003800..3008059	+	1419	183222257	-	LEPBI_I2908	-	hypothetical protein
2831	 38.16	0	3008234..3010099	-	621	183222258	-	LEPBI_I2909	-	putative arylsulfatase
2832	 39.74	0	3010096..3010485	-	129	183222259	-	LEPBI_I2910	-	putative transporter; putative membrane protein
2833	 41.78	0	3010534..3011385	+	283	183222260	-	LEPBI_I2911	-	alpha/beta family hydrolase
2834	 30.94	-1	3011553..3011969	-	138	183222261	-	LEPBI_I2912	-	PIN domain-containing protein
2835	 35.63	0	3011947..3012207	-	86	183222262	-	LEPBI_I2913	-	hypothetical protein
2836	 43.26	+1	3012574..3013218	+	214	183222263	-	LEPBI_I2914	-	hypothetical protein
2837	 39.67	0	3013793..3014455	-	220	183222264	-	LEPBI_I2915	-	hypothetical protein
2838	 41.67	0	3014904..3015611	-	235	183222265	-	LEPBI_I2916	-	hypothetical protein
2839	 30.16	-2	3015668..3016045	-	125	183222266	-	LEPBI_I2917	-	PIN domain-containing protein
2840	 29.32	-2	3016045..3016293	-	82	183222267	-	LEPBI_I2918	-	hypothetical protein
2841	 44.05	+1	3016423..3017850	-	475	183222268	lpdA3	LEPBI_I2919	-	dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes; dihydrolipoamide dehydrogenase)
2842	 39.14	0	3017893..3018633	-	246	183222269	-	LEPBI_I2920	-	putative S-adenosyl-L-methionine-dependent methyltransferase
2843	 36.93	0	3018711..3019877	+	388	183222270	-	LEPBI_I2921	-	hypothetical protein
2844	 37.79	0	3019878..3020393	+	171	183222271	-	LEPBI_I2922	-	hypothetical protein
2845	 43.45	+1	3020400..3021437	+	345	183222272	-	LEPBI_I2923	-	hypothetical protein
2846	 40.76	0	3021490..3022971	+	493	183222273	-	LEPBI_I2924	-	hypothetical protein
2847	 39.57	0	3023111..3023623	-	170	183222274	msrA1	LEPBI_I2925	-	peptide methionine sulfoxide reductase MsrA (protein-methionine-S-oxide reductase; peptide Met(O) reductase)
2848	 41.71	0	3023620..3024693	-	357	183222275	-	LEPBI_I2926	-	putative 5-methylthioribose-1-phosphate isomerase (MTNA)
2849	 35.90	0	3024810..3025082	+	90	183222276	-	LEPBI_I2927	-	hypothetical protein
2850	 36.17	0	3025089..3025829	-	246	183222277	-	LEPBI_I2928	-	hypothetical protein
2851	 36.85	0	3025826..3027643	-	605	183222278	-	LEPBI_I2929	-	hypothetical protein
2852	 46.13	+1	3027656..3028366	-	236	183222279	-	LEPBI_I2930	-	hypothetical protein
2853	 44.78	+1	3028403..3028603	-	66	183222280	-	LEPBI_I2931	-	RNA polymerase ECF-type sigma factor
2854	 39.38	0	3028611..3029321	-	236	183222281	-	LEPBI_I2932	-	RNA polymerase ECF-type sigma factor
2855	 39.67	0	3029367..3030281	+	304	183222282	-	LEPBI_I2933	-	putative signal peptide
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.