IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2550	 42.31	0	2707974..2708207	-	77	183221977	-	LEPBI_I2618	-	putative signal peptide
2551	 38.44	0	2708807..2710999	+	730	183221978	tpsA	LEPBI_I2619	-	trehalose-6-phosphate synthase
2552	 36.20	0	2710980..2712758	+	592	183221979	-	LEPBI_I2620	-	putative glycosyl hydrolase
2553	 33.66	-1	2712889..2715936	+	1015	183221980	-	LEPBI_I2621	-	putative two-component sensor histidine kinase
2554	 40.52	0	2716017..2716364	-	115	183221981	-	LEPBI_I2622	-	hypothetical protein
2555	 26.60	-2	2716363..2716659	+	98	183221982	-	LEPBI_Ia2609	-	hypothetical protein
2556	 33.84	-1	2716702..2717097	+	131	183221983	-	LEPBI_I2623	-	hypothetical protein
2557	 35.98	0	2717136..2718005	+	289	183221984	-	LEPBI_I2624	-	putative transcriptional regulator, AraC-type
2558	 36.81	0	2718163..2718996	+	277	183221985	-	LEPBI_I2625	-	hypothetical protein
2559	 37.76	0	2719237..2720817	+	526	183221986	-	LEPBI_I2626	-	putative methyl-accepting chemotaxis protein (MCP); putative membrane protein
2560	 38.57	0	2720913..2722133	+	406	183221987	-	LEPBI_I2628	-	hypothetical protein
2561	 39.56	0	2722154..2722603	-	149	183221988	-	LEPBI_I2629	-	rhodanese-like domain-containing protein
2562	 38.63	0	2722656..2723372	+	238	183221989	-	LEPBI_I2630	-	putative hydroxyacylglutathione hydrolase
2563	 41.53	0	2723369..2723734	+	121	183221990	-	LEPBI_I2631	-	hypothetical protein
2564	 40.29	0	2723750..2724310	+	186	183221991	-	LEPBI_I2632	-	hypothetical protein
2565	 37.57	0	2724376..2725059	+	227	183221992	msrA2	LEPBI_I2633	-	peptide methionine sulfoxide reductase MsrA (protein-methionine-S-oxide reductase; peptide Met(O) reductase)
2566	 35.11	0	2725034..2726554	-	506	183221993	-	LEPBI_I2634	-	hypothetical protein
2567	 37.46	0	2726748..2727377	-	209	183221994	-	LEPBI_I2635	-	putative signal peptide
2568	 44.21	+1	2727372..2730560	+	1062	183221995	-	LEPBI_I2636	-	hypothetical protein
2569	 39.58	0	2730592..2731632	-	346	183221996	-	LEPBI_I2637	-	putative strictosidine synthase; putative signal peptide
2570	 36.29	0	2731629..2732507	-	292	183221997	-	LEPBI_I2638	-	putative acyltransferase
2571	 36.22	0	2732509..2733753	-	414	183221998	-	LEPBI_I2639	-	putative serine phosphatase
2572	 39.94	0	2733766..2734128	-	120	183221999	-	LEPBI_I2640	-	hypothetical protein
2573	 36.36	0	2734130..2734987	-	285	183222000	-	LEPBI_I2641	-	putative short chain dehydrogenase
2574	 35.86	0	2734984..2736765	-	593	183222001	-	LEPBI_I2642	-	putative signal transduction histidine kinase; putative membrane protein
2575	 42.55	0	2736767..2737135	-	122	183222002	-	LEPBI_I2643	-	hypothetical protein
2576	 36.89	0	2737141..2737365	-	74	183222003	-	LEPBI_I2644	-	hypothetical protein
2577	 46.09	+1	2737362..2737745	-	127	183222004	acpS	LEPBI_I2645	-	Holo-[acyl-carrier-protein] synthase (Holo-ACP synthase; 4'-phosphopantetheinyl transferase AcpS)
2578	 34.47	-1	2737748..2743468	-	1906	183222005	-	LEPBI_I2646	-	putative serine/threonine protein kinase
2579	 39.35	0	2743478..2744242	-	254	183222006	fabG5	LEPBI_I2647	-	3-oxoacyl-[acyl-carrier protein] reductase
2580	 35.62	0	2744239..2745507	-	422	183222007	-	LEPBI_I2648	-	hypothetical protein
2581	 41.67	0	2745601..2746032	-	143	183222008	-	LEPBI_I2649	-	UspA-like DNA binding protein
2582	 43.28	+1	2746185..2746988	-	267	183222009	-	LEPBI_I2650	-	ABC-type transport system, permease, putative sperimidine/putrescine transport protein PotC; putative membrane protein
2583	 40.52	0	2746978..2747895	-	305	183222010	-	LEPBI_I2651	-	ABC-type transport system, permease, putative sperimidine/putrescine transport protein PotH; putative membrane protein
2584	 42.01	0	2747906..2748931	-	341	183222011	-	LEPBI_I2652	-	putrescine ABC transporter ATP-binding protein
2585	 41.03	0	2748966..2750135	-	389	183222012	-	LEPBI_I2653	-	putative spermidine/putrescine-binding periplasmic protein PotF/PotD; putative signal peptide
2586	 46.09	+1	2750274..2751731	+	485	183222013	gabD	LEPBI_I2654	-	succinate-semialdehyde dehydrogenase [NADP+] (SSDH)
2587	 45.58	+1	2751728..2753017	+	429	183222014	gabT	LEPBI_I2655	-	4-aminobutyrate aminotransferase
2588	 45.44	+1	2753025..2754470	+	481	183222015	-	LEPBI_I2656	-	putative betaine aldehyde dehydrogenase
2589	 40.84	0	2754496..2755827	+	443	183222016	-	LEPBI_I2657	-	hypothetical protein
2590	 42.28	0	2755872..2756519	-	215	183222017	-	LEPBI_I2658	-	putative signal peptide
2591	 42.07	0	2756554..2757846	+	430	183222018	-	LEPBI_I2660	-	hypothetical protein
2592	 43.01	+1	2757846..2758310	+	154	183222019	cheX	LEPBI_I2661	-	chemotaxis protein
2593	 38.52	0	2758383..2759327	-	314	183222020	-	LEPBI_I2662	-	hypothetical protein
2594	 39.92	0	2759324..2760052	-	242	183222021	-	LEPBI_I2663	-	hypothetical protein
2595	 41.68	0	2760057..2761913	-	618	183222022	-	LEPBI_I2664	-	hypothetical protein
2596	 44.24	+1	2761964..2763604	+	546	183222023	ybiT	LEPBI_I2665	-	ABC-type transport system, ATP-binding component
2597	 40.13	0	2763601..2764659	-	352	183222024	-	LEPBI_I2666	-	hypothetical protein
2598	 38.67	0	2764769..2765311	-	180	183222025	-	LEPBI_I2667	-	putative HAM1-related protein
2599	 38.14	0	2765362..2765652	-	96	183222026	-	LEPBI_I2668	-	putative anti-sigma factor antagonist
2600	 39.94	0	2765690..2766400	-	236	183222027	-	LEPBI_I2669	-	putative competence-related protein
2601	 39.24	0	2766450..2767532	-	360	183222028	-	LEPBI_I2670	-	putative signal peptide
2602	 36.92	0	2767597..2768238	+	213	183222029	-	LEPBI_I2671	-	hypothetical protein
2603	 43.42	+1	2768328..2768783	+	151	183222030	-	LEPBI_I2672	-	hypothetical protein
2604	 36.24	0	2768834..2770174	-	446	183222031	-	LEPBI_I2673	-	hypothetical protein
2605	 38.10	0	2770341..2772104	-	587	183222032	lntB	LEPBI_I2674	-	apolipoprotein N-acyltransferase 2 (ALP N-acyltransferase 2); putative membrane protein
2606	 42.10	0	2772129..2773166	-	345	183222033	-	LEPBI_I2675	-	putative signal peptide
2607	 40.55	0	2773207..2773788	-	193	183222034	-	LEPBI_I2676	-	CarD family transcriptional regulator
2608	 44.17	+1	2773873..2774490	-	205	183222035	-	LEPBI_I2677	-	hypothetical protein
2609	 34.12	-1	2774650..2775540	+	296	183222036	-	LEPBI_I2678	-	hypothetical protein
2610	 34.93	0	2775657..2776283	+	208	183222037	-	LEPBI_I2679	-	putative methyltransferase
2611	 36.35	0	2776290..2778242	-	650	183222038	-	LEPBI_I2680	-	hypothetical protein
2612	 40.37	0	2778311..2778907	-	198	183222039	ctaF	LEPBI_I2681	-	cytochrome c oxidase polypeptide IVB (cytochrome aa3 subunit 4B; Caa-3605 subunit 4B)
2613	 43.28	+1	2778921..2779694	-	257	183222040	ctaE	LEPBI_I2682	-	cytochrome c oxidase polypeptide III (cytochrome aa3 subunit 3; oxidase aa(3) subunit 3)
2614	 45.29	+1	2779681..2781294	-	537	183222041	ctaD	LEPBI_I2683	-	cytochrome c oxidase polypeptide I
2615	 42.58	0	2781304..2782266	-	320	183222042	ctaC	LEPBI_I2684	-	cytochrome c oxidase polypeptide II (cytochrome aa3 subunit 2; oxidase aa(3) subunit 2)
2616	 41.94	0	2782267..2783103	-	278	183222043	-	LEPBI_I2685	-	putative protein involved in the biogenesis of respiratory; putative signal peptide
2617	 40.23	0	2783398..2784282	+	294	183222044	ctaA	LEPBI_I2686	-	cytochrome oxidase assembly protein; putative membrane protein
2618	 41.49	0	2784279..2785136	+	285	183222045	ctaB	LEPBI_I2687	-	Protoheme IX farnesyltransferase (Heme O synthase); putative membrane protein; putative signal peptide
2619	 39.46	0	2785146..2785847	+	233	183222046	-	LEPBI_I2688	-	hypothetical protein
2620	 44.19	+1	2785847..2786776	+	309	183222047	-	LEPBI_I2689	-	hypothetical protein
2621	 36.16	0	2786874..2788958	-	694	183222048	-	LEPBI_I2690	-	putative phosphoserine phosphatase; putative membrane protein
2622	 39.50	0	2788975..2790255	-	426	183222049	gltA2	LEPBI_I2691	-	citrate synthase 1
2623	 44.16	+1	2790312..2790662	-	116	183222050	-	LEPBI_I2692	-	anti-sigma factor antagonist
2624	 47.75	+2	2790705..2790926	-	73	183222051	-	LEPBI_I2693	-	hypothetical protein
2625	 43.70	+1	2790977..2791381	-	134	183222052	-	LEPBI_I2694	-	putative cytochrome c; putative signal peptide
2626	 40.33	0	2791445..2792359	-	304	183222053	-	LEPBI_I2695	-	putative NAD dependent epimerase
2627	 37.11	0	2792433..2793014	+	193	183222054	-	LEPBI_I2696	-	hypothetical protein
2628	 37.83	0	2793011..2794588	+	525	183222055	-	LEPBI_I2697	-	putative ATPase
2629	 33.33	-1	2794585..2795523	+	312	183222056	-	LEPBI_I2698	-	hypothetical protein
2630	 38.80	0	2795524..2797170	+	548	183222057	-	LEPBI_I2699	-	hypothetical protein
2631	 36.35	0	2797199..2797696	+	165	183222058	-	LEPBI_I2700	-	hypothetical protein
2632	 41.31	0	2797689..2799104	+	471	183222059	-	LEPBI_I2701	-	hypothetical protein
2633	 39.56	0	2799101..2800144	+	347	183222060	-	LEPBI_I2702	-	NadR family transcriptional regulator
2634	 39.30	0	2800092..2800946	-	284	183222061	-	LEPBI_I2703	-	hypothetical protein
2635	 40.15	0	2800969..2801232	-	87	183222062	-	LEPBI_I2704	-	hypothetical protein
2636	 38.85	0	2801239..2802000	-	253	183222063	-	LEPBI_I2705	-	hypothetical protein
2637	 41.05	0	2802048..2803304	+	418	183222064	-	LEPBI_I2706	-	hypothetical protein
2638	 39.97	0	2803305..2803952	+	215	183222065	-	LEPBI_I2707	-	hypothetical protein
2639	 45.05	+1	2803963..2804619	+	218	183222066	-	LEPBI_I2708	-	hypothetical protein
2640	 42.15	0	2804703..2807933	+	1076	183222067	-	LEPBI_I2709	-	hypothetical protein
2641	 41.18	0	2807945..2808148	+	67	183222068	-	LEPBI_I2710	-	hypothetical protein
2642	 45.37	+1	2808152..2808907	+	251	183222069	mapB	LEPBI_I2711	-	methionine aminopeptidase (MAP; peptidase M)
2643	 42.42	0	2808966..2809097	+	43	183222070	-	LEPBI_I2712	-	hypothetical protein
2644	 40.66	0	2809102..2809497	+	131	183222071	-	LEPBI_I2713	-	two-component response regulator
2645	 45.90	+1	2809519..2810322	+	267	183222072	thiM	LEPBI_I2714	-	hydoxyethylthiazole kinase
2646	 46.76	+1	2810312..2810944	+	210	183222073	thiE	LEPBI_I2715	-	thiamine-phosphate pyrophosphorylase
2647	 43.59	+1	2810941..2811915	-	324	183222074	-	LEPBI_I2716	-	putative iron-sulfur cluster-binding protein
2648	 41.86	0	2811914..2812300	+	128	183222075	-	LEPBI_I2717	-	hypothetical protein
2649	 39.39	0	2812303..2812698	-	131	183222076	-	LEPBI_I2718	-	putative thioesterase
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.