IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2428	 33.33	-1	2572045..2572860	-	271	183221855	-	LEPBI_I2488	-	putative transcriptional regulator
2429	 39.10	0	2573054..2574058	+	334	183221856	-	LEPBI_I2489	-	hypothetical protein
2430	 39.51	0	2574136..2575188	+	350	183221857	-	LEPBI_I2490	-	putative lipoprotein
2431	 37.96	0	2575199..2575912	-	237	183221858	-	LEPBI_I2491	-	hypothetical protein
2432	 37.52	0	2576584..2577372	-	262	183221859	eutC	LEPBI_I2492	-	ethanolamine ammonia-lyase, light chain (ethanolamine ammonia-lyase small subunit)
2433	 40.55	0	2577378..2578763	-	461	183221860	eutB	LEPBI_I2493	-	ethanolamine ammonia-lyase, heavy chain (ethanolamine ammonia-lyase large subunit)
2434	 36.07	0	2578860..2580359	+	499	183221861	-	LEPBI_I2494	-	putative deoxyribodipyrimidine photo-lyase
2435	 43.67	+1	2580556..2582781	+	741	183221862	katG	LEPBI_I2495	-	peroxidase/catalase
2436	 39.15	0	2582782..2583159	+	125	183221863	-	LEPBI_I2496	-	putative high-potential iron-sulfur protein
2437	 34.97	0	2583402..2585417	+	671	183221864	ppc	LEPBI_I2497	-	phosphoenolpyruvate carboxylase
2438	 32.41	-1	2585568..2585783	+	71	183221865	ppc	LEPBI_I2499	-	phosphoenolpyruvate carboxylase (PEPCase; PEPC)
2439	 34.31	-1	2585823..2586128	-	101	183221866	-	LEPBI_I2500	-	hypothetical protein
2440	 37.13	0	2586304..2586804	-	166	183221867	-	LEPBI_I2501	-	hypothetical protein
2441	 34.40	-1	2586946..2587227	+	93	183221868	-	LEPBI_I2502	-	hypothetical protein
2442	 37.76	0	2587224..2588669	-	481	183221869	recQ2	LEPBI_I2503	-	ATP-dependent DNA helicase RecQ
2443	 34.44	-1	2588753..2590012	-	419	183221870	-	LEPBI_I2504	-	putative transcriptional regulator; putative membrane protein
2444	 39.58	0	2590017..2590352	-	111	183221871	-	LEPBI_I2505	-	hypothetical protein
2445	 41.84	0	2590513..2591100	-	195	183221872	-	LEPBI_I2506	-	hypothetical protein
2446	 34.84	0	2591656..2592846	+	396	183221873	-	LEPBI_I2508	-	putative adenylate cyclase; putative membrane protein
2447	 36.85	0	2592959..2593981	-	340	183221874	-	LEPBI_I2509	-	hypothetical protein
2448	 37.67	0	2594301..2594876	+	191	183221875	-	LEPBI_I2510	-	hypothetical protein
2449	 37.06	0	2594985..2595413	+	142	183221876	-	LEPBI_I2511	-	putative signal peptide
2450	 34.02	-1	2595383..2595964	+	193	183221877	-	LEPBI_I2512	-	putative signal peptide
2451	 38.16	0	2595961..2596995	+	344	183221878	-	LEPBI_I2513	-	hypothetical protein
2452	 38.36	0	2597076..2598089	-	337	183221879	-	LEPBI_I2514	-	hypothetical protein
2453	 32.16	-1	2598297..2599064	-	255	183221880	-	LEPBI_I2515	-	putative two-component response regulator
2454	 31.22	-1	2599066..2601003	-	645	183221881	-	LEPBI_I2516	-	putative signal peptide
2455	 37.64	0	2601122..2602561	+	479	183221882	-	LEPBI_I2517	-	hypothetical protein
2456	 43.62	+1	2602741..2603508	-	255	183221883	-	LEPBI_I2518	-	hypothetical protein
2457	 43.55	+1	2604043..2605197	+	384	183221884	-	LEPBI_I2520	-	putative cAMP-dependent protein kinase
2458	 43.16	+1	2605243..2606361	+	372	183221885	-	LEPBI_I2521	-	putative phopholipase
2459	 45.13	+1	2606458..2608152	+	564	183221886	-	LEPBI_I2522	-	hypothetical protein
2460	 36.56	0	2608153..2608617	+	154	183221887	-	LEPBI_I2523	-	hypothetical protein
2461	 38.15	0	2608951..2609220	+	89	183221888	-	LEPBI_I2524	-	hypothetical protein
2462	 33.09	-1	2609438..2612692	+	1084	183221889	-	LEPBI_I2525	-	putative adenylate cyclase; putative membrane protein
2463	 34.12	-1	2612685..2613323	+	212	183221890	-	LEPBI_I2526	-	putative two-component response regulator
2464	 32.82	-1	2613320..2615269	+	649	183221891	-	LEPBI_I2527	-	hypothetical protein
2465	 50.31	+2	2615897..2616055	+	52	183221892	-	LEPBI_I2528	-	hypothetical protein
2466	 30.83	-1	2616328..2617206	-	292	183221893	-	LEPBI_I2529	-	hypothetical protein
2467	 32.69	-1	2617277..2618362	-	361	183221894	-	LEPBI_I2530	-	hypothetical protein
2468	 33.07	-1	2618364..2619509	-	381	183221895	-	LEPBI_I2531	-	hypothetical protein
2469	 41.29	0	2623360..2623560	-	66	183221896	-	LEPBI_I2535	-	hypothetical protein
2470	 38.10	0	2623843..2624871	+	342	183221897	-	LEPBI_I2536	-	putative signal peptide
2471	 37.85	0	2624881..2626608	+	575	183221898	-	LEPBI_I2537	-	hypothetical protein
2472	 36.39	0	2626746..2627660	-	304	183221899	-	LEPBI_I2538	-	alpha/beta family hydrolase
2473	 39.63	0	2627659..2628405	+	248	183221900	-	LEPBI_I2539	-	hypothetical protein
2474	 42.04	0	2628472..2628942	+	156	183221901	-	LEPBI_I2540	-	Dps family DNA-binding stress response protein
2475	 38.35	0	2628977..2629774	-	265	183221902	-	LEPBI_I2541	-	putative esterase/lipase
2476	 36.13	0	2629809..2630882	-	357	183221903	-	LEPBI_I2542	-	hypothetical protein
2477	 42.94	+1	2631001..2632218	-	405	183221904	aatA	LEPBI_I2543	-	aspartate aminotransferase A (transaminase A; AspAT)
2478	 42.52	0	2632227..2633924	-	565	183221905	-	LEPBI_I2544	-	putative DNA repair helicase
2479	 44.14	+1	2634292..2635263	-	323	183221906	dusA	LEPBI_I2545	-	tRNA-dihydrouridine synthase A
2480	 43.45	+1	2635274..2637388	-	704	183221907	flhA	LEPBI_I2546	-	flagellar biosynthesis protein FlhA; putative membrane protein
2481	 42.99	+1	2637393..2638604	-	403	183221908	flhB	LEPBI_I2547	-	flagellar biosynthetic protein FlhB; putative membrane protein
2482	 41.51	0	2638724..2639506	-	260	183221909	fliR	LEPBI_I2548	-	flagellar biosynthetic protein FliR
2483	 39.39	0	2639508..2639771	-	87	183221910	fliQ	LEPBI_I2549	-	flagellar biosynthetic protein FliQ
2484	 38.64	0	2639768..2640577	-	269	183221911	fliP	LEPBI_I2550	-	flagellar biosynthetic protein FliP; putative membrane protein; putative signal peptide
2485	 41.43	0	2640574..2641425	-	283	183221912	-	LEPBI_I2551	-	putative flagellar biogenesis protein FliO
2486	 46.50	+1	2641422..2642492	-	356	183221913	fliY	LEPBI_I2552	-	flagellar motor switch protein FliY
2487	 48.15	+2	2642589..2642912	-	107	183221914	-	LEPBI_I2553	-	hypothetical protein
2488	 40.36	0	2642914..2645160	-	748	183221915	-	LEPBI_I2554	-	bifunctional Sodium:alanine symporter/phosphatidylserine decarboxylase proenzyme/putative membrane protein
2489	 39.03	0	2645196..2646020	+	274	183221916	-	LEPBI_I2555	-	hypothetical protein
2490	 34.17	-1	2646059..2646298	+	79	183221917	-	LEPBI_I2556	-	hypothetical protein
2491	 37.64	0	2646295..2646642	+	115	183221918	-	LEPBI_I2557	-	putative arsenate reductase-like protein
2492	 31.24	-1	2646643..2647071	+	142	183221919	-	LEPBI_I2558	-	hypothetical protein
2493	 38.53	0	2647076..2648095	-	339	183221920	lpxD	LEPBI_I2559	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2494	 34.39	-1	2648299..2648676	+	125	183221921	-	LEPBI_I2560	-	hypothetical protein
2495	 35.39	0	2648673..2649206	-	177	183221922	-	LEPBI_I2561	-	hypothetical protein
2496	 31.68	-1	2649214..2650485	-	423	183221923	-	LEPBI_I2562	-	hypothetical protein
2497	 36.64	0	2650501..2651226	-	241	183221924	-	LEPBI_I2563	-	putative glycosyl transferase
2498	 39.84	0	2651204..2652493	-	429	183221925	-	LEPBI_I2564	-	hypothetical protein
2499	 40.80	0	2652529..2653425	-	298	183221926	-	LEPBI_I2565	-	putative thiosulfate sulfurtransferase; putative signal peptide
2500	 40.25	0	2653566..2654042	+	158	183221927	-	LEPBI_I2566	-	hypothetical protein
2501	 41.69	0	2654066..2655250	-	394	183221928	-	LEPBI_I2567	-	putative Cys/Met metabolism PLP-dependent enzyme
2502	 40.18	0	2655335..2656006	-	223	183221929	-	LEPBI_I2568	-	ABC-type transport system, ATP binding protein; putative lipoprotein-releasing system ATP-binding protein LolD
2503	 40.83	0	2656003..2657256	-	417	183221930	-	LEPBI_I2569	-	ABC-type transport system, permease; putative membrane protein
2504	 40.44	0	2657257..2658030	-	257	183221931	-	LEPBI_I2570	-	putative signal peptide
2505	 38.99	0	2658081..2659370	-	429	183221932	-	LEPBI_I2571	-	hypothetical protein
2506	 36.79	0	2659367..2660146	-	259	183221933	-	LEPBI_I2572	-	putative signal peptide
2507	 39.77	0	2660143..2660577	-	144	183221934	-	LEPBI_I2573	-	hypothetical protein
2508	 42.31	0	2660602..2663151	-	849	183221935	clpC	LEPBI_I2574	-	ATPase ClpC, ATP-binding subunit
2509	 40.18	0	2663212..2663985	-	257	183221936	-	LEPBI_I2575	-	hypothetical protein
2510	 43.63	+1	2663982..2664680	-	232	183221937	-	LEPBI_I2576	-	ABC-type transport system, ATP binding protein
2511	 43.75	+1	2664673..2666025	-	450	183221938	-	LEPBI_I2577	-	putative lipoprotein releasing system transmembrane protein LolC; putative membrane protein
2512	 41.13	0	2666086..2667072	+	328	183221939	-	LEPBI_I2578	-	hypothetical protein
2513	 33.53	-1	2667078..2668097	+	339	183221940	-	LEPBI_I2579	-	putative signal peptide
2514	 37.76	0	2668181..2668813	-	210	183221941	-	LEPBI_I2580	-	putative signal peptide
2515	 35.45	0	2668896..2669792	-	298	183221942	-	LEPBI_I2581	-	putative small conductance mechanosensitive ion channel; putative membrane protein
2516	 39.33	0	2669785..2670885	-	366	183221943	aroB2	LEPBI_I2582	-	3-dehydroquinate synthase
2517	 37.20	0	2670882..2671346	-	154	183221944	-	LEPBI_I2583	-	ADP-ribose phosphorylase
2518	 41.15	0	2671343..2672071	-	242	183221945	rnc	LEPBI_I2584	-	ribonuclease III
2519	 37.18	0	2672125..2672358	-	77	183221946	acpP	LEPBI_I2585	-	Acyl carrier protein (ACP)
2520	 42.57	0	2672735..2674228	+	497	183221947	-	LEPBI_I2586	-	hypothetical protein
2521	 37.36	0	2674336..2676246	+	636	183221948	-	LEPBI_I2587	-	hypothetical protein
2522	 37.25	0	2676243..2677364	+	373	183221949	-	LEPBI_I2588	-	hypothetical protein
2523	 43.83	+1	2677486..2678247	-	253	183221950	fabG	LEPBI_I2590	-	3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase)
2524	 44.18	+1	2678467..2679489	-	340	183221951	plsX	LEPBI_I2591	-	Fatty acid/phospholipid synthesis protein PlsX
2525	 43.90	+1	2679763..2680377	-	204	183221952	hisG	LEPBI_I2593	-	ATP phosphoribosyltransferase
2526	 36.95	0	2680381..2681127	-	248	183221953	-	LEPBI_I2594	-	hypothetical protein
2527	 42.39	0	2681132..2682832	-	566	183221954	rpsA	LEPBI_I2595	-	30S ribosomal protein S1
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.