IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2356	 39.02	0	2485759..2487078	+	439	183221783	-	LEPBI_I2413	-	putative RNA methyltransferase
2357	 39.45	0	2487129..2488256	+	375	183221784	-	LEPBI_I2414	-	putative signal peptide
2358	 39.62	0	2488320..2489162	+	280	183221785	-	LEPBI_I2415	-	hypothetical protein
2359	 35.69	0	2489169..2490401	-	410	183221786	-	LEPBI_I2416	-	putative adenylate or guanylate cyclase
2360	 41.48	0	2490407..2491228	-	273	183221787	hycG	LEPBI_I2417	-	hydrogenase-4 subunit G
2361	 36.48	0	2491225..2492652	-	475	183221788	hycE	LEPBI_I2419	-	hydrogenase-4 subunit E
2362	 32.59	-1	2492649..2493857	-	402	183221789	hyfF	LEPBI_I2420	-	hydrogenase-4 subunit F
2363	 33.66	-1	2493854..2494465	-	203	183221790	hyfE	LEPBI_I2421	-	hydrogenase-4 subunit E
2364	 35.49	0	2494475..2495353	-	292	183221791	hycD	LEPBI_I2422	-	hydrogenase-4 subunit D
2365	 32.82	-1	2495362..2497098	-	578	183221792	hycC	LEPBI_I2423	-	hydrogenase-4 subunit C; putative membrane protein
2366	 35.60	0	2497476..2498180	+	234	183221793	-	LEPBI_I2424	-	ABC-type transport system, ATP binding protein
2367	 30.38	-2	2498177..2500648	+	823	183221794	-	LEPBI_I2425	-	ABC-type transport system, permease; putative membrane protein
2368	 34.78	0	2500687..2501586	+	299	183221795	-	LEPBI_I2426	-	hypothetical protein
2369	 30.94	-1	2501608..2502360	-	250	183221796	-	LEPBI_I2427	-	hypothetical protein
2370	 39.61	0	2502360..2502917	-	185	183221797	pyrE	LEPBI_I2428	-	orotate phosphoribosyltransferase (oprt; oprtase)
2371	 41.70	0	2503338..2504006	+	222	183221798	-	LEPBI_I2429	-	TetR family transcriptional regulator
2372	 39.21	0	2504007..2504993	-	328	183221799	-	LEPBI_I2430	-	putative di-haem cytochrome C peroxidase (CCP)
2373	 38.06	0	2505275..2505634	+	119	183221800	-	LEPBI_I2431	-	hypothetical protein
2374	 38.69	0	2505716..2506648	+	310	183221801	argF	LEPBI_I2432	-	ornithine carbamoyltransferase (OTCase)
2375	 42.15	0	2506765..2507229	-	154	183221802	-	LEPBI_I2433	-	putative globin
2376	 40.00	0	2507321..2507500	+	59	183221803	-	LEPBI_I2434	-	hypothetical protein
2377	 41.19	0	2507491..2508483	+	330	183221804	-	LEPBI_I2435	-	putative malate synthase-like protein
2378	 38.54	0	2508541..2510613	-	690	183221805	-	LEPBI_I2436	-	putative methyl-accepting chemotaxis protein McpB
2379	 39.30	0	2510771..2511943	-	390	183221806	-	LEPBI_I2437	-	putative signal peptide
2380	 39.02	0	2511985..2512635	-	216	183221807	-	LEPBI_I2438	-	hypothetical protein
2381	 38.80	0	2512693..2513955	-	420	183221808	-	LEPBI_I2439	-	putative voltage-gated chloride channel protein; putative membrane protein; putative signal peptide
2382	 37.93	0	2513991..2514164	+	57	183221809	-	LEPBI_I2440	-	hypothetical protein
2383	 32.04	-1	2514225..2514998	-	257	183221810	-	LEPBI_I2441	-	hypothetical protein
2384	 35.19	0	2515069..2517225	-	718	183221811	-	LEPBI_I2442	-	putative two-component response regulator
2385	 37.28	0	2517368..2518813	-	481	183221812	-	LEPBI_I2443	-	putative apolipoprotein N-acyltransferase; putative membrane protein
2386	 34.17	-1	2518810..2519523	-	237	183221813	-	LEPBI_I2444	-	hypothetical protein
2387	 38.25	0	2519737..2520672	-	311	183221814	xerC	LEPBI_I2445	-	tyrosine recombinase XerC
2388	 45.45	+1	2520970..2522133	+	387	183221815	recA	LEPBI_I2446	-	protein RecA (recombinase A)
2389	 36.29	0	2522313..2523362	+	349	183221816	-	LEPBI_I2447	-	hypothetical protein
2390	 37.92	0	2523373..2524200	-	275	183221817	dkgA	LEPBI_I2448	-	2,5-diketo-D-gluconic acid reductase A
2391	 38.69	0	2524272..2526659	-	795	183221818	clpB	LEPBI_I2449	-	chaperone ClpB
2392	 34.20	-1	2526817..2528784	+	655	183221819	-	LEPBI_I2450	-	putative serine phosphatase RsbU regulator; putative membrane protein; putative signal peptide
2393	 32.55	-1	2528788..2530959	-	723	183221820	-	LEPBI_I2451	-	putative two-component regulator
2394	 32.40	-1	2531003..2532940	-	645	183221821	-	LEPBI_I2452	-	putative two-component regulator
2395	 35.30	0	2532940..2533803	-	287	183221822	-	LEPBI_I2453	-	hypothetical protein
2396	 36.04	0	2533827..2536340	-	837	183221823	-	LEPBI_I2454	-	putative cation-transporting ATPase; putative membrane protein
2397	 35.93	0	2536393..2537742	+	449	183221824	-	LEPBI_I2455	-	putative peptidase
2398	 36.53	0	2537719..2538906	-	395	183221825	-	LEPBI_I2456	-	putative hydroxypyruvate reductase
2399	 36.56	0	2538911..2541172	-	753	183221826	-	LEPBI_I2457	-	putative thioredoxin-disulfide reductase; putative membrane protein
2400	 33.10	-1	2541215..2542519	-	434	183221827	-	LEPBI_I2458	-	putative two-component sensor protein; putative membrane protein
2401	 33.65	-1	2542516..2544405	-	629	183221828	-	LEPBI_I2459	-	putative serine phosphatase RsbU; putative membrane protein; putative signal peptide
2402	 37.04	0	2544410..2544598	-	62	183221829	-	LEPBI_I2460	-	hypothetical protein
2403	 40.46	0	2544866..2545300	+	144	183221830	-	LEPBI_I2461	-	ferric uptake regulation protein
2404	 36.72	0	2545330..2545713	-	127	183221831	-	LEPBI_I2462	-	putative signal peptide
2405	 35.90	0	2545814..2546788	+	324	183221832	panE	LEPBI_I2463	-	2-dehydropantoate 2-reductase
2406	 38.41	0	2546811..2547125	-	104	183221833	-	LEPBI_I2464	-	hypothetical protein
2407	 36.72	0	2547150..2547533	-	127	183221834	-	LEPBI_I2465	-	putative lipoprotein involved in motility and chitin utilization; putative membrane protein
2408	 40.03	0	2547581..2548789	-	402	183221835	-	LEPBI_I2466	-	putative cAMP-binding protein
2409	 37.85	0	2548831..2550225	-	464	183221836	-	LEPBI_I2467	-	putative type I phosphodiesterase/nucleotide pyrophosphatase
2410	 35.90	0	2550240..2551448	-	402	183221837	-	LEPBI_I2468	-	hypothetical protein
2411	 35.57	0	2551439..2552602	-	387	183221838	aroB1	LEPBI_I2469	-	3-dehydroquinate synthase
2412	 37.73	0	2552608..2553471	-	287	183221839	-	LEPBI_I2470	-	hypothetical protein
2413	 40.04	0	2553472..2554500	-	342	183221840	-	LEPBI_I2471	-	putative metallo-dependent hydrolase
2414	 36.41	0	2554506..2555318	-	270	183221841	-	LEPBI_I2472	-	putative signal peptide
2415	 40.28	0	2555614..2557455	+	613	183221842	-	LEPBI_I2473	-	hypothetical protein
2416	 34.54	-1	2557463..2558125	-	220	183221843	-	LEPBI_I2474	-	TetR family transcriptional regulator
2417	 37.81	0	2558230..2559234	+	334	183221844	-	LEPBI_I2475	-	putative alcohol dehydrogenase, zinc-containing
2418	 42.94	+1	2559649..2560377	-	242	183221845	-	LEPBI_I2477	-	putative hemolysin-III related protein; putative membrane protein; putative signal peptide
2419	 31.33	-1	2560403..2560552	-	49	183221846	-	LEPBI_I2478	-	hypothetical protein
2420	 35.71	0	2560732..2561109	-	125	183221847	-	LEPBI_I2479	-	putative signal peptide
2421	 40.28	0	2561137..2562891	-	584	183221848	-	LEPBI_I2480	-	Acyl-CoA dehydrogenase
2422	 40.30	0	2562902..2564896	-	664	183221849	fadH	LEPBI_I2481	-	2,4-dienoyl-CoA reductase (NADPH)
2423	 38.38	0	2565024..2565677	+	217	183221850	-	LEPBI_I2482	-	TetR family transcriptional regulator
2424	 38.61	0	2565682..2566344	-	220	183221851	-	LEPBI_Ia2473	-	TetR family transcriptional regulator
2425	 42.00	0	2566442..2568610	-	722	183221852	-	LEPBI_I2485	-	putative neutral/alkaline ceramidase; putative signal peptide
2426	 38.70	0	2568925..2571030	+	701	183221853	-	LEPBI_I2486	-	glycoside hydrolase family protein 5
2427	 37.67	0	2571194..2572024	-	276	183221854	-	LEPBI_I2487	-	hypothetical protein
2428	 33.33	-1	2572045..2572860	-	271	183221855	-	LEPBI_I2488	-	putative transcriptional regulator
2429	 39.10	0	2573054..2574058	+	334	183221856	-	LEPBI_I2489	-	hypothetical protein
2430	 39.51	0	2574136..2575188	+	350	183221857	-	LEPBI_I2490	-	putative lipoprotein
2431	 37.96	0	2575199..2575912	-	237	183221858	-	LEPBI_I2491	-	hypothetical protein
2432	 37.52	0	2576584..2577372	-	262	183221859	eutC	LEPBI_I2492	-	ethanolamine ammonia-lyase, light chain (ethanolamine ammonia-lyase small subunit)
2433	 40.55	0	2577378..2578763	-	461	183221860	eutB	LEPBI_I2493	-	ethanolamine ammonia-lyase, heavy chain (ethanolamine ammonia-lyase large subunit)
2434	 36.07	0	2578860..2580359	+	499	183221861	-	LEPBI_I2494	-	putative deoxyribodipyrimidine photo-lyase
2435	 43.67	+1	2580556..2582781	+	741	183221862	katG	LEPBI_I2495	-	peroxidase/catalase
2436	 39.15	0	2582782..2583159	+	125	183221863	-	LEPBI_I2496	-	putative high-potential iron-sulfur protein
2437	 34.97	0	2583402..2585417	+	671	183221864	ppc	LEPBI_I2497	-	phosphoenolpyruvate carboxylase
2438	 32.41	-1	2585568..2585783	+	71	183221865	ppc	LEPBI_I2499	-	phosphoenolpyruvate carboxylase (PEPCase; PEPC)
2439	 34.31	-1	2585823..2586128	-	101	183221866	-	LEPBI_I2500	-	hypothetical protein
2440	 37.13	0	2586304..2586804	-	166	183221867	-	LEPBI_I2501	-	hypothetical protein
2441	 34.40	-1	2586946..2587227	+	93	183221868	-	LEPBI_I2502	-	hypothetical protein
2442	 37.76	0	2587224..2588669	-	481	183221869	recQ2	LEPBI_I2503	-	ATP-dependent DNA helicase RecQ
2443	 34.44	-1	2588753..2590012	-	419	183221870	-	LEPBI_I2504	-	putative transcriptional regulator; putative membrane protein
2444	 39.58	0	2590017..2590352	-	111	183221871	-	LEPBI_I2505	-	hypothetical protein
2445	 41.84	0	2590513..2591100	-	195	183221872	-	LEPBI_I2506	-	hypothetical protein
2446	 34.84	0	2591656..2592846	+	396	183221873	-	LEPBI_I2508	-	putative adenylate cyclase; putative membrane protein
2447	 36.85	0	2592959..2593981	-	340	183221874	-	LEPBI_I2509	-	hypothetical protein
2448	 37.67	0	2594301..2594876	+	191	183221875	-	LEPBI_I2510	-	hypothetical protein
2449	 37.06	0	2594985..2595413	+	142	183221876	-	LEPBI_I2511	-	putative signal peptide
2450	 34.02	-1	2595383..2595964	+	193	183221877	-	LEPBI_I2512	-	putative signal peptide
2451	 38.16	0	2595961..2596995	+	344	183221878	-	LEPBI_I2513	-	hypothetical protein
2452	 38.36	0	2597076..2598089	-	337	183221879	-	LEPBI_I2514	-	hypothetical protein
2453	 32.16	-1	2598297..2599064	-	255	183221880	-	LEPBI_I2515	-	putative two-component response regulator
2454	 31.22	-1	2599066..2601003	-	645	183221881	-	LEPBI_I2516	-	putative signal peptide
2455	 37.64	0	2601122..2602561	+	479	183221882	-	LEPBI_I2517	-	hypothetical protein
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.