IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2197	 27.34	-2	2323637..2324053	+	138	183221624	-	LEPBI_I2248	-	hypothetical protein
2198	 31.17	-1	2324336..2324566	+	76	183221625	-	LEPBI_I2249	-	putative virulence-associated protein B
2199	 26.57	-2	2324566..2324964	+	132	183221626	-	LEPBI_I2250	-	PilT protein
2200	 28.31	-2	2325235..2325612	+	125	183221627	-	LEPBI_I2251	-	hypothetical protein
2201	 30.34	-2	2325629..2325895	+	88	183221628	-	LEPBI_I2252	-	hypothetical protein
2202	 33.63	-1	2326106..2326771	+	221	183221629	-	LEPBI_I2253	-	hypothetical protein
2203	 32.74	-1	2326841..2327008	+	55	183221630	-	LEPBI_I2254	-	hypothetical protein
2204	 24.05	-2	2327227..2327754	+	175	183221631	-	LEPBI_I2255	-	hypothetical protein
2205	 32.35	-1	2329457..2329762	+	101	183221632	-	LEPBI_I2256	-	putative plasmid maintenance system antidote-like protein
2206	 25.76	-2	2330247..2330378	+	43	183221633	-	LEPBI_I2257	-	hypothetical protein
2207	 25.00	-2	2330487..2330966	+	159	183221634	-	LEPBI_I2258	-	hypothetical protein
2208	 34.07	-1	2331541..2331945	+	134	183221635	-	LEPBI_I2259	-	transcription regulator
2209	 28.50	-2	2332491..2332883	+	130	183221636	-	LEPBI_I2260	-	MerR family transcriptional regulator
2210	 34.48	-1	2332877..2333224	+	115	183221637	-	LEPBI_I2261	-	hypothetical protein
2211	 36.64	0	2333518..2333970	+	150	183221638	-	LEPBI_I2262	-	putative transposase
2212	 31.76	-1	2334216..2334470	+	84	183221639	-	LEPBI_I2263	-	hypothetical protein
2213	 27.13	-2	2334630..2334887	+	85	183221640	-	LEPBI_I2264	-	hypothetical protein
2214	 30.00	-2	2334890..2335339	+	149	183221641	-	LEPBI_I2265	-	hypothetical protein
2215	 31.81	-1	2335432..2336022	+	196	183221642	-	LEPBI_I2266	-	hypothetical protein
2216	 34.85	0	2336452..2337045	-	197	183221643	-	LEPBI_I2267	-	putative glutathione S-transferase
2217	 35.17	0	2337452..2337778	+	108	183221644	-	LEPBI_I2268	-	quarternary ammonium compound transport protein
2218	 36.11	0	2337803..2338306	+	167	183221645	-	LEPBI_I2269	-	hypothetical protein
2219	 31.89	-1	2338533..2339366	+	277	183221646	-	LEPBI_I2271	-	hypothetical protein
2220	 35.93	0	2339356..2340087	-	243	183221647	rsuA	LEPBI_I2272	-	ribosomal small subunit pseudouridine synthase A (rRNA pseudouridylate synthase A)
2221	 34.94	0	2340203..2342005	+	600	183221648	-	LEPBI_I2273	-	ABC-type transport system, permease ATP binding protein
2222	 36.36	0	2342066..2343190	+	374	183221649	-	LEPBI_I2274	-	hypothetical protein
2223	 31.78	-1	2343206..2343463	+	85	183221650	-	LEPBI_I2275	-	hypothetical protein
2224	 34.36	-1	2343473..2344153	+	226	183221651	-	LEPBI_I2276	-	hypothetical protein
2225	 41.35	0	2344200..2345720	+	506	183221652	-	LEPBI_I2277	-	Short-chain dehydrogenase
2226	 37.52	0	2345837..2346337	-	166	183221653	-	LEPBI_I2278	-	hypothetical protein
2227	 34.81	0	2346568..2348187	+	539	183221654	-	LEPBI_I2279	-	glycosyl transferase family protein
2228	 35.56	0	2348184..2348498	+	104	183221655	-	LEPBI_I2280	-	hypothetical protein
2229	 35.70	0	2348524..2349282	+	252	183221656	-	LEPBI_I2281	-	glycosyl transferase family protein
2230	 34.48	-1	2349349..2349696	+	115	183221657	-	LEPBI_I2282	-	putative anti-anti-sigma regulatory factor
2231	 40.00	0	2349685..2349849	-	54	183221658	-	LEPBI_I2283	-	hypothetical protein
2232	 36.85	0	2349878..2351329	-	483	183221659	-	LEPBI_I2284	-	putative O-glycosyl hydrolase
2233	 38.19	0	2351411..2352172	+	253	183221660	speD	LEPBI_I2285	-	S-adenosylmethionine decarboxylase proenzyme (AdoMetDC; SamDC)
2234	 38.21	0	2352169..2352681	-	170	183221661	-	LEPBI_I2286	-	hypothetical protein
2235	 39.49	0	2352728..2354269	-	513	183221662	-	LEPBI_I2287	-	putative methyl-accepting chemotaxis protein (MCP); putative membrane protein
2236	 37.06	0	2354541..2356715	+	724	183221663	-	LEPBI_I2288	-	hypothetical protein
2237	 38.10	0	2356729..2357358	+	209	183221664	-	LEPBI_I2289	-	leucine-rich repeat-containing protein
2238	 40.94	0	2357420..2360167	+	915	183221665	ileS	LEPBI_I2290	-	isoleucyl-tRNA synthetase (isoleucine--tRNA ligase; IleRS)
2239	 39.29	0	2360321..2361949	-	542	183221666	-	LEPBI_I2291	-	putative virulence factor MviN-like; putative membrane protein
2240	 35.98	0	2361961..2362830	-	289	183221667	-	LEPBI_I2292	-	hypothetical protein
2241	 40.02	0	2362834..2363820	-	328	183221668	-	LEPBI_I2293	-	putative signal peptide
2242	 43.83	+1	2363877..2364419	-	180	183221669	lipB	LEPBI_I2294	-	lipoyltransferase (lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferase; lipoate-protein ligase B)
2243	 43.95	+1	2364513..2365049	+	178	183221670	-	LEPBI_I2295	-	hypothetical protein
2244	 49.86	+2	2365046..2365402	+	118	183221671	panD	LEPBI_I2296	-	aspartate 1-decarboxylase (precursor) (aspartate alpha-decarboxylase)
2245	 37.78	0	2365468..2366322	+	284	183221672	-	LEPBI_I2297	-	putative signal peptide
2246	 48.83	+2	2366617..2366829	-	70	183221673	-	LEPBI_I2298	-	hypothetical protein
2247	 36.13	0	2366903..2367724	+	273	183221674	-	LEPBI_I2299	-	hypothetical protein
2248	 39.42	0	2367797..2368108	+	103	183221675	trxA2	LEPBI_I2300	-	thioredoxin (TRX)
2249	 43.08	+1	2368127..2370280	+	717	183221676	-	LEPBI_I2301	-	putative cAMP-binding protein
2250	 45.18	+1	2370332..2371462	+	376	183221677	-	LEPBI_I2302	-	Acyl coenzyme A dehydrogenase
2251	 43.94	+1	2371675..2373249	-	524	183221678	thiC	LEPBI_I2303	-	thiamine biosynthesis protein ThiC
2252	 34.59	-1	2373520..2375028	-	502	183221679	-	LEPBI_I2304	-	hypothetical protein
2253	 43.82	+1	2375261..2375632	-	123	183221680	-	LEPBI_I2305	-	hypothetical protein
2254	 44.67	+1	2375691..2376899	+	402	183221681	-	LEPBI_I2306	-	putative signal peptide
2255	 41.51	0	2377021..2377644	+	207	183221682	-	LEPBI_I2307	-	hypothetical protein
2256	 38.49	0	2377641..2378921	-	426	183221683	-	LEPBI_I2308	-	MFS family transporter
2257	 34.15	-1	2379002..2379370	-	122	183221684	-	LEPBI_I2309	-	hypothetical protein
2258	 40.80	0	2379500..2380075	-	191	183221685	-	LEPBI_I2310	-	hypothetical protein
2259	 39.87	0	2380672..2381895	+	407	183221686	-	LEPBI_I2311	-	oxygen-independent coproporphyrinogen III oxidase-like protein
2260	 42.59	0	2382209..2382640	+	143	183221687	-	LEPBI_I2312	-	CBS domain-containing protein
2261	 36.74	0	2382637..2383311	-	224	183221688	-	LEPBI_I2313	-	hypothetical protein
2262	 45.00	+1	2383377..2384465	-	362	183221689	-	LEPBI_I2314	-	putative aspartate aminotransferase (transaminase A; AspAT)
2263	 39.94	0	2384512..2386266	+	584	183221690	manB	LEPBI_I2315	-	phosphomannomutase (phosphomannose mutase)
2264	 40.15	0	2386263..2387480	+	405	183221691	argD	LEPBI_I2316	-	acetylornithine aminotransferase
2265	 43.24	+1	2387477..2388556	+	359	183221692	leuB	LEPBI_I2317	-	3-isopropylmalate dehydrogenase
2266	 38.69	0	2388569..2388979	+	136	183221693	-	LEPBI_I2318	-	putative two-component response regulator
2267	 39.68	0	2388960..2389715	-	251	183221694	-	LEPBI_I2319	-	hypothetical protein
2268	 33.40	-1	2389712..2391280	-	522	183221695	-	LEPBI_I2320	-	putative signal peptide
2269	 34.72	-1	2391284..2392366	-	360	183221696	-	LEPBI_I2321	-	hypothetical protein
2270	 36.90	0	2392376..2394223	-	615	183221697	-	LEPBI_I2322	-	ABC-type transport system, periplasmic binding protein
2271	 36.28	0	2394215..2395606	+	463	183221698	-	LEPBI_I2323	-	putative alpha amylase
2272	 40.62	0	2397650..2398513	-	287	183221699	nadC	LEPBI_I2326	-	nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) QAPRTase
2273	 41.20	0	2398586..2399983	-	465	183221700	-	LEPBI_I2327	-	putative ATPase
2274	 37.80	0	2400050..2400385	-	111	183221701	-	LEPBI_I2328	-	putative anti-sigma factor antagonist
2275	 41.94	0	2400479..2401594	-	371	183221702	tgt	LEPBI_I2329	-	queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase; guanine insertion enzyme)
2276	 35.83	0	2401594..2402073	-	159	183221703	-	LEPBI_I2330	-	ferric uptake regulation protein
2277	 44.57	+1	2402099..2402650	-	183	183221704	-	LEPBI_I2331	-	hypothetical protein
2278	 39.78	0	2402775..2404589	+	604	183221705	-	LEPBI_I2332	-	putative metalloendopeptidase; putative signal peptide
2279	 39.15	0	2404562..2407327	-	921	183221706	greA	LEPBI_I2333	-	GreA/GreB family transcriptional elongation factor
2280	 43.57	+1	2407532..2408518	-	328	183221707	flaA1	LEPBI_I2335	-	flagellar filament outer layer protein A
2281	 40.50	0	2408535..2409260	-	241	183221708	flaA2	LEPBI_I2336	-	flagellar filament outer layer protein precursor (sheath protein); putative signal peptide
2282	 43.64	+1	2409387..2409551	-	54	183221709	-	LEPBI_I2337	-	hypothetical protein
2283	 42.46	0	2409654..2410124	-	156	183221710	-	LEPBI_I2338	-	putative cAMP-binding protein
2284	 46.05	+1	2410314..2410934	+	206	183221711	-	LEPBI_I2339	-	two-component regulatory LuxR family response regulator
2285	 41.92	0	2410938..2413349	-	803	183221712	-	LEPBI_I2340	-	ATPase domain-containing protein of Hsp90; membrane protein
2286	 45.27	+1	2413530..2415113	+	527	183221713	-	LEPBI_I2342	-	putative ATPase
2287	 45.36	+1	2415252..2415542	+	96	183221714	groES	LEPBI_I2343	-	Hsp10 family GroES protein
2288	 44.42	+1	2415565..2417214	+	549	183221715	groEL	LEPBI_I2344	-	Hsp60 family GroEL protein
2289	 31.36	-1	2417379..2417732	+	117	183221716	-	LEPBI_I2345	-	hypothetical protein
2290	 30.00	-2	2417725..2418114	+	129	183221717	-	LEPBI_I2346	-	hypothetical protein
2291	 45.05	+1	2418214..2418546	-	110	183221718	-	LEPBI_I2347	-	putative translation release factor
2292	 41.56	0	2418590..2419282	-	230	183221719	-	LEPBI_I2348	-	hypothetical protein
2293	 44.54	+1	2419330..2420382	-	350	183221720	mrp	LEPBI_I2349	-	Mrp family ATP-binding protein
2294	 41.78	0	2420393..2421256	-	287	183221721	-	LEPBI_I2350	-	putative metallo-dependent phosphatase
2295	 38.55	0	2421253..2421501	-	82	183221722	-	LEPBI_I2351	-	putative dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)
2296	 38.11	0	2421585..2422421	+	278	183221723	-	LEPBI_I2352	-	hypothetical protein
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.