IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.82   STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2101	 36.81	0	2237133..2237420	+	95	183221528	-	LEPBI_I2146	-	putative sigma-54 modulation protein
2102	 43.11	+1	2237427..2237651	+	74	183221529	-	LEPBI_I2147	-	hypothetical protein
2103	 46.79	+1	2237833..2238300	+	155	183221530	-	LEPBI_I2148	-	hypothetical protein
2104	 42.52	0	2238366..2238920	-	184	183221531	-	LEPBI_I2149	-	hypothetical protein
2105	 42.66	0	2238925..2239503	-	192	183221532	-	LEPBI_I2150	-	putative RNA polymerase sigma-70 factor
2106	 46.34	+1	2239591..2241435	-	614	183221533	mutL	LEPBI_I2151	-	DNA mismatch repair protein MutL
2107	 43.20	+1	2241479..2241853	-	124	183221534	-	LEPBI_I2152	-	ferric uptake regulation protein
2108	 45.62	+1	2241960..2242439	+	159	183221535	-	LEPBI_I2153	-	putative flavin reductase like protein
2109	 46.42	+1	2242450..2244696	+	748	183221536	purL	LEPBI_I2154	-	phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
2110	 42.19	0	2244729..2246015	+	428	183221537	-	LEPBI_I2155	-	hypothetical protein
2111	 37.57	0	2246003..2246569	-	188	183221538	-	LEPBI_I2156	-	hypothetical protein
2112	 41.90	0	2247154..2247363	+	69	183221539	-	LEPBI_I2157	-	hypothetical protein
2113	 37.58	0	2248101..2248712	+	203	183221540	-	LEPBI_I2159	-	hypothetical protein
2114	 37.04	0	2248714..2248983	+	89	183221541	-	LEPBI_I2160	-	hypothetical protein
2115	 35.40	0	2249020..2251683	+	887	183221542	-	LEPBI_I2161	-	putative DNA polymerase
2116	 25.11	-2	2252101..2252781	+	226	183221543	-	LEPBI_I2162	-	hypothetical protein
2117	 25.58	-2	2252967..2253443	+	158	183221544	-	LEPBI_I2163	-	hypothetical protein
2118	 30.53	-2	2253819..2254211	+	130	183221545	-	LEPBI_I2164	-	putative glyoxalase family protein
2119	 28.77	-2	2254285..2254635	+	116	183221546	-	LEPBI_I2165	-	hypothetical protein
2120	 30.63	-2	2254911..2255354	+	147	183221547	-	LEPBI_I2166	-	hypothetical protein
2121	 30.77	-1	2255473..2255706	+	77	183221548	-	LEPBI_I2168	-	hypothetical protein
2122	 31.81	-1	2256000..2257376	+	458	183221549	-	LEPBI_I2170	-	putative nucleoside triphosphate hydrolase
2123	 26.97	-2	2257395..2257661	+	88	183221550	-	LEPBI_I2171	-	hypothetical protein
2124	 31.33	-1	2257874..2258620	+	248	183221551	-	LEPBI_I2172	-	hypothetical protein
2125	 31.69	-1	2259333..2259941	+	202	183221552	-	LEPBI_I2173	-	hypothetical protein
2126	 24.82	-2	2260162..2260995	+	277	183221553	-	LEPBI_I2174	-	hypothetical protein
2127	 33.54	-1	2261672..2263135	+	487	183221554	-	LEPBI_I2175	-	putative ATPase
2128	 26.76	-2	2263315..2263983	+	222	183221555	-	LEPBI_I2176	-	hypothetical protein
2129	 28.13	-2	2264269..2264979	+	236	183221556	-	LEPBI_I2177	-	hypothetical protein
2130	 26.91	-2	2265168..2265836	+	222	183221557	-	LEPBI_I2178	-	hypothetical protein
2131	 25.08	-2	2265826..2266467	+	213	183221558	-	LEPBI_I2179	-	hypothetical protein
2132	 27.71	-2	2266691..2267419	+	242	183221559	-	LEPBI_I2180	-	hypothetical protein
2133	 31.68	-1	2267641..2268003	+	120	183221560	-	LEPBI_I2181	-	hypothetical protein
2134	 30.51	-2	2268010..2268504	+	164	183221561	-	LEPBI_I2182	-	hypothetical protein
2135	 29.36	-2	2269241..2269894	+	217	183221562	-	LEPBI_I2183	-	hypothetical protein
2136	 25.93	-2	2269891..2270295	+	134	183221563	-	LEPBI_I2184	-	putative signal peptide
2137	 31.69	-1	2270491..2271282	+	263	183221564	-	LEPBI_I2185	-	putative SAM-dependent methyltransferase
2138	 27.26	-2	2271483..2272568	+	361	183221565	-	LEPBI_I2186	-	hypothetical protein
2139	 31.76	-1	2272786..2273994	+	402	183221566	-	LEPBI_I2187	-	hypothetical protein
2140	 29.99	-2	2274075..2274791	+	238	183221567	-	LEPBI_I2188	-	hypothetical protein
2141	 30.43	-2	2274941..2275078	+	45	183221568	-	LEPBI_I2189	-	hypothetical protein
2142	 29.35	-2	2275470..2276147	-	225	183221569	-	LEPBI_I2190	-	hypothetical protein
2143	 28.39	-2	2276203..2276586	+	127	183221570	-	LEPBI_I2191	-	MerR family transcriptional regulator
2144	 26.17	-2	2276844..2277611	+	255	183221571	-	LEPBI_I2192	-	hypothetical protein
2145	 27.78	-2	2277820..2279547	+	575	183221572	-	LEPBI_I2193	-	hypothetical protein
2146	 22.85	-2	2279720..2280196	+	158	183221573	-	LEPBI_I2194	-	hypothetical protein
2147	 24.36	-2	2281108..2282076	+	322	183221574	-	LEPBI_I2195	-	hypothetical protein
2148	 23.78	-2	2282333..2282761	+	142	183221575	-	LEPBI_I2196	-	hypothetical protein
2149	 26.67	-2	2282955..2283104	+	49	183221576	-	LEPBI_I2197	-	hypothetical protein
2150	 27.97	-2	2283316..2284005	+	229	183221577	-	LEPBI_I2198	-	hypothetical protein
2151	 28.62	-2	2284740..2285036	+	98	183221578	-	LEPBI_I2199	-	hypothetical protein
2152	 29.35	-2	2285033..2285434	+	133	183221579	-	LEPBI_I2200	-	hypothetical protein
2153	 26.67	-2	2285647..2286231	+	194	183221580	-	LEPBI_I2201	-	hypothetical protein
2154	 26.35	-2	2286228..2286800	+	190	183221581	-	LEPBI_I2202	-	hypothetical protein
2155	 32.47	-1	2287093..2287323	+	76	183221582	-	LEPBI_I2203	-	hypothetical protein
2156	 28.76	-2	2287316..2287774	+	152	183221583	-	LEPBI_I2204	-	hypothetical protein
2157	 32.66	-1	2288463..2289059	+	198	183221584	-	LEPBI_I2205	-	hypothetical protein
2158	 28.16	-2	2289578..2290486	+	302	183221585	-	LEPBI_I2207	-	hypothetical protein
2159	 31.57	-1	2290691..2291941	+	416	183221586	-	LEPBI_I2208	-	putative nucleoside triphosphate hydrolase
2160	 29.60	-2	2292623..2293426	+	267	183221587	-	LEPBI_I2209	-	hypothetical protein
2161	 21.67	-2	2293791..2294090	+	99	183221588	-	LEPBI_I2210	-	hypothetical protein
2162	 33.95	-1	2295169..2295651	+	160	183221589	-	LEPBI_I2211	-	hypothetical protein
2163	 25.65	-2	2296326..2297171	+	281	183221590	-	LEPBI_I2212	-	hypothetical protein
2164	 25.17	-2	2297371..2297823	+	150	183221591	-	LEPBI_I2213	-	hypothetical protein
2165	 26.02	-2	2298154..2299629	+	491	183221592	-	LEPBI_I2214	-	hypothetical protein
2166	 24.57	-2	2299841..2300593	+	250	183221593	-	LEPBI_I2215	-	hypothetical protein
2167	 30.05	-2	2300794..2301432	+	212	183221594	-	LEPBI_I2216	-	hypothetical protein
2168	 28.65	-2	2301676..2302059	+	127	183221595	-	LEPBI_I2217	-	putative phage-related protein
2169	 26.60	-2	2302056..2302337	+	93	183221596	-	LEPBI_I2218	-	putative transcriptional regulator
2170	 31.13	-1	2302545..2302907	+	120	183221597	-	LEPBI_I2219	-	hypothetical protein
2171	 31.52	-1	2302914..2303408	+	164	183221598	-	LEPBI_I2220	-	hypothetical protein
2172	 22.68	-2	2303695..2304135	+	146	183221599	-	LEPBI_I2221	-	hypothetical protein
2173	 26.94	-2	2304525..2305181	+	218	183221600	-	LEPBI_I2222	-	HAD family hydrolase
2174	 32.70	-1	2305370..2306782	+	470	183221601	-	LEPBI_I2223	-	putative ATP-binding protein
2175	 28.87	-2	2306991..2307281	+	96	183221602	-	LEPBI_I2224	-	hypothetical protein
2176	 30.13	-2	2308037..2308411	+	124	183221603	-	LEPBI_I2226	-	hypothetical protein
2177	 30.06	-2	2308717..2309052	+	111	183221604	-	LEPBI_I2227	-	hypothetical protein
2178	 28.84	-2	2309052..2309429	+	125	183221605	-	LEPBI_I2228	-	hypothetical protein
2179	 30.98	-1	2311107..2311829	+	240	183221606	-	LEPBI_I2229	-	hypothetical protein
2180	 32.98	-1	2312122..2312403	+	93	183221607	-	LEPBI_I2230	-	putative plasmid maintenance system killer protein
2181	 28.07	-2	2312417..2312758	+	113	183221608	-	LEPBI_I2231	-	putative lambda repressor-like DNA-binding protein
2182	 29.35	-2	2313177..2313854	-	225	183221609	-	LEPBI_I2232	-	hypothetical protein
2183	 28.39	-2	2313910..2314293	+	127	183221610	-	LEPBI_I2233	-	MerR family transcriptional regulator
2184	 33.96	-1	2315038..2315196	+	52	183221611	-	LEPBI_I2234	-	hypothetical protein
2185	 33.00	-1	2315454..2315753	+	99	183221612	-	LEPBI_I2235	-	hypothetical protein
2186	 25.00	-2	2315873..2316016	+	47	183221613	-	LEPBI_I2236	-	hypothetical protein
2187	 24.32	-2	2316347..2317012	+	221	183221614	-	LEPBI_I2238	-	hypothetical protein
2188	 27.31	-2	2317304..2317552	+	82	183221615	-	LEPBI_I2239	-	hypothetical protein
2189	 24.29	-2	2317549..2317968	+	139	183221616	-	LEPBI_I2240	-	hypothetical protein
2190	 29.89	-2	2318193..2319149	+	318	183221617	-	LEPBI_I2241	-	hypothetical protein
2191	 27.73	-2	2319352..2320029	+	225	183221618	-	LEPBI_I2242	-	hypothetical protein
2192	 29.58	-2	2320539..2320751	+	70	183221619	-	LEPBI_I2243	-	hypothetical protein
2193	 32.83	-1	2320752..2321150	+	132	183221620	-	LEPBI_I2244	-	putative death-on-curing protein DOC
2194	 26.73	-2	2321346..2322224	+	292	183221621	-	LEPBI_I2245	-	hypothetical protein
2195	 24.14	-2	2322473..2323114	+	213	183221622	-	LEPBI_I2246	-	hypothetical protein
2196	 31.30	-1	2323392..2323637	+	81	183221623	-	LEPBI_I2247	-	putative helix-turn-helix protein CopG
2197	 27.34	-2	2323637..2324053	+	138	183221624	-	LEPBI_I2248	-	hypothetical protein
2198	 31.17	-1	2324336..2324566	+	76	183221625	-	LEPBI_I2249	-	putative virulence-associated protein B
2199	 26.57	-2	2324566..2324964	+	132	183221626	-	LEPBI_I2250	-	PilT protein
2200	 28.31	-2	2325235..2325612	+	125	183221627	-	LEPBI_I2251	-	hypothetical protein
38.82	MEAN

4.08	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.