IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
154	 40.47	0	151362..153113	+	583	183219581	-	LEPBI_I0156	-	putative cAMP-binding protein
155	 41.99	0	153198..154202	-	334	183219582	-	LEPBI_I0157	-	hypothetical protein
156	 38.04	0	154218..154748	-	176	183219583	-	LEPBI_I0158	-	hypothetical protein
157	 45.14	+1	154750..155664	-	304	183219584	-	LEPBI_I0159	-	hypothetical protein
158	 40.58	0	155897..157732	+	611	183219585	-	LEPBI_I0160	-	hypothetical protein
159	 41.74	0	157742..159037	+	431	183219586	-	LEPBI_I0161	-	hypothetical protein
160	 37.71	0	159118..159642	-	174	183219587	-	LEPBI_I0162	-	hypothetical protein
161	 42.47	0	159644..160858	-	404	183219588	-	LEPBI_I0163	-	hypothetical protein
162	 40.61	0	161146..162162	+	338	183219589	gmd	LEPBI_I0164	-	GDP-mannose 4,6-dehydratase
163	 38.55	0	162284..162532	-	82	183219590	-	LEPBI_I0165	-	hypothetical protein
164	 36.88	0	162735..162875	+	46	183219591	-	LEPBI_I0166	-	hypothetical protein
165	 34.31	-1	162881..163186	-	101	183219592	-	LEPBI_I0167	-	hypothetical protein
166	 41.50	0	163235..164446	-	403	183219593	-	LEPBI_I0168	-	putative cAMP-binding protein
167	 38.04	0	164525..165055	-	176	183219594	-	LEPBI_I0169	-	hypothetical protein
168	 43.81	+1	165055..166161	-	368	183219595	-	LEPBI_I0170	-	hypothetical protein
169	 43.22	+1	166221..166847	-	208	183219596	-	LEPBI_I0171	-	putative hydrolase
170	 38.66	0	166847..168067	-	406	183219597	-	LEPBI_I0172	-	putative ribonuclease D (RNase D)
171	 46.36	+1	168109..169536	+	475	183219598	purF	LEPBI_I0173	-	glutamine phosphoribosylpyrophosphate amidotransferase
172	 38.67	0	169536..169910	+	124	183219599	ptpS	LEPBI_I0174	-	6-pyruvoyl tetrahydrobiopterin synthase
173	 38.55	0	169911..170657	+	248	183219600	-	LEPBI_I0175	-	hypothetical protein
174	 37.72	0	170674..171288	+	204	183219601	-	LEPBI_I0176	-	hypothetical protein
175	 30.15	-2	171350..172732	+	460	183219602	-	LEPBI_I0177	-	putative alginate O-acetyltransferase; putative membrane protein
176	 30.23	-2	172741..173868	+	375	183219603	-	LEPBI_I0178	-	hypothetical protein
177	 38.66	0	174062..174850	+	262	183219604	-	LEPBI_I0179	-	hypothetical protein
178	 43.30	+1	175139..175429	+	96	183219605	pntAB	LEPBI_I0180	-	NAD(P) transhydrogenase subunit alpha part 2; putative membrane protein
179	 42.27	0	175429..176826	+	465	183219606	pntB	LEPBI_I0181	-	NAD(P) transhydrogenase subunit beta; putative membrane protein
180	 38.84	0	176838..177509	+	223	183219607	-	LEPBI_I0182	-	LuxR family response regulator
181	 35.80	0	177695..178708	-	337	183219608	-	LEPBI_I0183	-	hypothetical protein
182	 33.80	-1	178710..180221	-	503	183219609	-	LEPBI_I0184	-	hypothetical protein
183	 34.24	-1	180313..181863	-	516	183219610	-	LEPBI_I0185	-	hypothetical protein
184	 39.71	0	181863..182912	-	349	183219611	-	LEPBI_I0186	-	putative signal peptide
185	 42.96	+1	182925..184139	-	404	183219612	lysC	LEPBI_I0187	-	aspartokinase
186	 41.99	0	184242..185177	+	311	183219613	-	LEPBI_I0188	-	Acyl-CoA desaturase; putative membrane protein
187	 35.88	0	185186..185695	-	169	183219614	-	LEPBI_I0189	-	hypothetical protein
188	 39.16	0	185698..186006	-	102	183219615	-	LEPBI_I0190	-	hypothetical protein
189	 38.73	0	186003..186539	-	178	183219616	-	LEPBI_I0191	-	hypothetical protein
190	 40.84	0	186529..187527	-	332	183219617	-	LEPBI_I0192	-	NADPH:quinone reductase
191	 38.36	0	187581..188375	+	264	183219618	-	LEPBI_I0193	-	hypothetical protein
192	 41.02	0	188375..189454	+	359	183219619	-	LEPBI_I0194	-	putative glycosyl transferase
193	 41.67	0	189476..189691	+	71	183219620	flbD	LEPBI_I0195	-	flagellar protein FlbD
194	 47.89	+2	189695..190477	+	260	183219621	motA	LEPBI_I0196	-	chemotaxis MotA protein; putative membrane protein
195	 42.57	0	190487..191320	+	277	183219622	motB	LEPBI_I0197	-	chemotaxis MotB protein
196	 40.53	0	191322..191849	+	175	183219623	fliL	LEPBI_I0198	-	flagellar FliL protein
197	 45.75	+1	191855..192595	+	246	183219624	kdsB	LEPBI_I0199	-	3-deoxy-manno-octulosonate cytidylyltransferase
198	 42.50	0	192884..194596	-	570	183219625	-	LEPBI_I0200	-	putative sodium/hydrogen exchanger; putative membrane protein
199	 43.42	+1	194674..196170	-	498	183219626	-	LEPBI_I0201	-	putative signal peptide
200	 45.26	+1	196167..197516	-	449	183219627	-	LEPBI_I0202	-	putative signal peptide
201	 39.44	0	197523..198833	-	436	183219628	-	LEPBI_I0203	-	ABC transporter membrane protein
202	 38.48	0	198857..199750	-	297	183219629	-	LEPBI_I0204	-	ABC transporter
203	 37.29	0	199828..200433	+	201	183219630	-	LEPBI_I0205	-	hypothetical protein
204	 37.69	0	200507..200896	+	129	183219631	-	LEPBI_I0206	-	hypothetical protein
205	 38.03	0	200974..201420	+	148	183219632	-	LEPBI_I0207	-	putative acetyltransferase
206	 43.60	+1	201514..202146	-	210	183219633	-	LEPBI_I0208	-	TetR family transcriptional regulator
207	 45.18	+1	202350..203117	+	255	183219634	fabG1	LEPBI_I0209	-	3-oxoacyl-[acyl-carrier-protein] reductase
208	 40.55	0	203214..203864	-	216	183219635	-	LEPBI_I0210	-	hypothetical protein
209	 43.04	+1	204108..204581	-	157	183219636	-	LEPBI_I0211	-	hypothetical protein
210	 38.55	0	204568..204912	-	114	183219637	-	LEPBI_I0212	-	ArsR family transcriptional regulator
211	 30.69	-1	205347..205838	+	163	183219638	-	LEPBI_I0213	-	hypothetical protein
212	 29.70	-2	205849..206013	-	54	183219639	-	LEPBI_I0214	-	hypothetical protein
213	 36.70	0	206084..206647	+	187	183219640	-	LEPBI_I0215	-	hypothetical protein
214	 28.33	-2	206684..207223	-	179	183219641	-	LEPBI_I0216	-	hypothetical protein
215	 40.28	0	207283..209298	-	671	183219642	ligA	LEPBI_I0217	-	DNA ligase (polydeoxyribonucleotide synthase [NAD+])
216	 38.26	0	209299..210312	-	337	183219643	-	LEPBI_I0218	-	putative metalloendopeptidase
217	 41.60	0	210311..211048	+	245	183219644	-	LEPBI_I0219	-	putative vancomycin sensitivity protein SanA; putative signal peptide
218	 32.39	-1	211138..212091	+	317	183219645	-	LEPBI_I0220	-	hypothetical protein
219	 33.16	-1	212312..212875	+	187	183219646	-	LEPBI_I0221	-	hypothetical protein
220	 35.39	0	212925..213800	-	291	183219647	-	LEPBI_I0222	-	hypothetical protein
221	 40.97	0	213879..215594	+	571	183219648	fad	LEPBI_I0223	-	Acyl-CoA dehydrogenase
222	 39.27	0	215597..216505	+	302	183219649	-	LEPBI_I0224	-	putative permease; putative membrane protein
223	 36.57	0	216502..217398	+	298	183219650	-	LEPBI_I0225	-	hypothetical protein
224	 37.50	0	217395..217874	+	159	183219651	-	LEPBI_I0226	-	hypothetical protein
225	 38.95	0	217954..220374	-	806	183219652	-	LEPBI_I0227	-	putative bifunctional enzyme: glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H- dependent glycerol-3-phosphate dehydrogenase)/ glycerol-3-phosphate acyltransferase (GPAT)
226	 40.45	0	220435..221868	+	477	183219653	-	LEPBI_I0228	-	hypothetical protein
227	 36.13	0	221917..222489	+	190	183219654	-	LEPBI_I0229	-	hypothetical protein
228	 32.59	-1	222514..222648	+	44	183219655	-	LEPBI_I0230	-	hypothetical protein
229	 38.76	0	222654..223427	+	257	183219656	-	LEPBI_I0231	-	hypothetical protein
230	 41.03	0	223433..223900	-	155	183219657	-	LEPBI_I0232	-	hypothetical protein
231	 43.63	+1	223900..225852	-	650	183219658	ftsH	LEPBI_I0233	-	cell division protease; putative signal peptide
232	 40.60	0	225880..226443	-	187	183219659	pthB	LEPBI_I0234	-	peptidyl-tRNA hydrolase (PTH)
233	 43.40	+1	226463..227098	-	211	183219660	rplY	LEPBI_I0235	-	50S ribosomal protein L25
234	 43.95	+1	227116..228057	-	313	183219661	prs	LEPBI_I0236	-	ribose-phosphate pyrophosphokinase (phosphoribosyl pyrophosphate synthetase)
235	 42.13	0	228054..228815	-	253	183219662	glmU	LEPBI_I0237	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase / glucosamine-1-phosphate N-acetyltransferase
236	 43.21	+1	228923..229843	-	306	183219663	ispE	LEPBI_I0238	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
237	 39.10	0	229845..230798	-	317	183219664	-	LEPBI_I0239	-	hypothetical protein
238	 41.77	0	230798..231970	-	390	183219665	fabI	LEPBI_I0240	-	Fatty acid synthase subunit beta
239	 40.00	0	232088..232387	-	99	183219666	-	LEPBI_I0241	-	hypothetical protein
240	 40.55	0	232411..234003	+	530	183219667	-	LEPBI_I0242	-	putative sodium:solute symporter; putative membrane protein
241	 32.15	-1	234057..234395	+	112	183219668	-	LEPBI_I0243	-	hypothetical protein
242	 45.21	+1	234399..235004	-	201	183219669	-	LEPBI_I0244	-	hypothetical protein
243	 42.57	0	235123..236541	-	472	183219670	-	LEPBI_I0245	-	putative dimethylaniline monooxygenase
244	 36.38	0	236803..237654	-	283	183219671	-	LEPBI_I0246	-	hypothetical protein
245	 37.63	0	237672..238346	-	224	183219672	-	LEPBI_I0247	-	hypothetical protein
246	 39.87	0	238380..238853	-	157	183219673	-	LEPBI_I0248	-	hypothetical protein
247	 34.67	-1	238857..239006	-	49	183219674	-	LEPBI_I0249	-	hypothetical protein
248	 38.98	0	239125..241815	+	896	183219675	valS	LEPBI_I0250	-	valyl-tRNA synthetase
249	 40.45	0	241799..243076	+	425	183219676	purD	LEPBI_I0251	-	phosphoribosylamine--glycine ligase
250	 37.14	0	243077..243916	+	279	183219677	-	LEPBI_I0252	-	hypothetical protein
251	 38.74	0	243940..245067	+	375	183219678	prfB	LEPBI_I0253	-	peptide chain release factor 2
252	 39.68	0	245072..246568	+	498	183219679	-	LEPBI_I0254	-	hypothetical protein
253	 37.73	0	246631..247677	+	348	183219680	-	LEPBI_I0255	-	hypothetical protein
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.