IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.82   STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.44	0	141..1466	+	441	183219428	dnaA	LEPBI_I0001	-	chromosomal replication initiator protein DnaA
2	 36.46	0	1713..2831	+	372	183219429	dnaN	LEPBI_I0002	-	DNA polymerase III, beta chain
3	 35.69	0	2831..3934	+	367	183219430	recF	LEPBI_I0003	-	DNA replication and repair protein RecF
4	 36.11	0	3931..4254	+	107	183219431	-	LEPBI_I0004	-	hypothetical protein
5	 40.57	0	4333..6252	+	639	183219432	gyrB1	LEPBI_I0005	-	DNA gyrase subunit B
6	 40.17	0	6272..8803	+	843	183219433	gyrA1	LEPBI_I0006	-	DNA gyrase subunit A
7	 37.48	0	8817..9830	+	337	183219434	-	LEPBI_I0007	-	putative tRNA-dihydrouridine synthase
8	 39.58	0	9841..10224	+	127	183219435	-	LEPBI_I0008	-	hypothetical protein
9	 42.78	0	10339..10920	-	193	183219436	-	LEPBI_I0009	-	putative lipoprotein; putative signal peptide
10	 33.21	-1	11050..12627	+	525	183219437	-	LEPBI_I0010	-	hypothetical protein
11	 30.97	-1	12608..13495	+	295	183219438	-	LEPBI_I0011	-	putative transcriptional regulator
12	 35.59	0	13474..14583	-	369	183219439	-	LEPBI_I0012	-	hypothetical protein
13	 44.59	+1	14635..14865	+	76	183219440	-	LEPBI_I0013	-	hypothetical protein
14	 36.46	0	14849..15424	-	191	183219441	maf	LEPBI_I0014	-	putative septum formation protein Maf
15	 37.98	0	15449..15706	+	85	183219442	-	LEPBI_I0015	-	hypothetical protein
16	 41.06	0	15703..16440	+	245	183219443	fabG4	LEPBI_I0016	-	3-oxoacyl-[acyl-carrier-protein] reductase
17	 34.76	0	16452..17084	+	210	183219444	-	LEPBI_I0017	-	hypothetical protein
18	 35.72	0	17076..18080	-	334	183219445	-	LEPBI_I0018	-	hypothetical protein
19	 34.79	0	18127..19839	+	570	183219446	-	LEPBI_I0019	-	hypothetical protein
20	 36.75	0	19860..22052	-	730	183219447	rnr	LEPBI_I0020	-	ribonuclease R
21	 38.01	0	22057..22761	-	234	183219448	-	LEPBI_I0021	-	hypothetical protein
22	 37.91	0	22737..23195	-	152	183219449	-	LEPBI_I0022	-	hypothetical protein
23	 36.37	0	23192..24046	-	284	183219450	-	LEPBI_I0023	-	hypothetical protein
24	 41.35	0	24122..26104	+	660	183219451	-	LEPBI_I0024	-	Beta-galactosidase
25	 37.47	0	26126..27019	+	297	183219452	-	LEPBI_I0025	-	hypothetical protein
26	 42.94	+1	27030..27872	+	280	183219453	-	LEPBI_I0026	-	putative inositol monophosphatase
27	 40.66	0	27979..28551	+	190	183219454	sodB	LEPBI_I0027	-	superoxide dismutase (Fe)
28	 40.10	0	28640..30073	+	477	183219455	trpE	LEPBI_I0028	-	anthranilate synthase component I
29	 40.59	0	30085..30690	+	201	183219456	trpG1	LEPBI_I0029	-	anthranilate synthase component II
30	 35.05	0	30736..31959	-	407	183219457	-	LEPBI_I0030	-	hypothetical protein
31	 33.53	-1	31934..32446	-	170	183219458	-	LEPBI_I0031	-	putative signal peptide
32	 32.79	-1	32535..33269	+	244	183219459	-	LEPBI_I0032	-	hypothetical protein
33	 42.54	0	33266..33982	-	238	183219460	cysE	LEPBI_I0033	-	Serine acetyltransferase
34	 36.67	0	34262..35191	+	309	183219461	-	LEPBI_I0034	-	hypothetical protein
35	 34.62	-1	35188..36585	+	465	183219462	-	LEPBI_I0035	-	putative signal peptide
36	 34.49	-1	36686..37375	+	229	183219463	-	LEPBI_I0036	-	hypothetical protein
37	 40.75	0	37383..38582	-	399	183219464	-	LEPBI_I0037	-	putative transferase
38	 38.07	0	38694..40085	+	463	183219465	add2	LEPBI_I0038	-	adenosine deaminase
39	 34.57	-1	40125..41177	+	350	183219466	-	LEPBI_I0039	-	hypothetical protein
40	 35.84	0	41212..41730	-	172	183219467	-	LEPBI_I0040	-	putative signal peptide
41	 32.58	-1	41811..42209	-	132	183219468	-	LEPBI_I0041	-	hypothetical protein
42	 32.72	-1	42233..42718	-	161	183219469	-	LEPBI_I0042	-	putative acetyltransferase
43	 39.15	0	42885..43727	+	280	183219470	-	LEPBI_I0043	-	aromatic-ring-opening dioxygenase domain-containing protein
44	 38.25	0	43771..44421	+	216	183219471	-	LEPBI_I0044	-	putative carboxylesterase 2
45	 34.15	-1	44434..45171	-	245	183219472	-	LEPBI_I0045	-	hypothetical protein
46	 34.92	0	45579..45704	+	41	183219473	-	LEPBI_I0046	-	hypothetical protein
47	 34.94	0	45843..46835	-	330	183219474	-	LEPBI_I0047	-	IS30 family transposase
48	 32.47	-1	47002..47232	-	76	183219475	-	LEPBI_I0048	-	hypothetical protein
49	 41.07	0	47282..48586	-	434	183219476	purB	LEPBI_I0049	-	adenylosuccinate lyase
50	 41.41	0	48695..49462	+	255	183219477	fabG3b	LEPBI_I0050	-	3-oxoacyl-[acyl-carrier-protein] reductase
51	 38.32	0	49449..51413	-	654	183219478	-	LEPBI_I0051	-	hypothetical protein
52	 38.31	0	51508..52290	-	260	183219479	-	LEPBI_I0052	-	putative enoyl-CoA hydratase
53	 33.98	-1	52407..53330	-	307	183219480	-	LEPBI_I0053	-	hypothetical protein
54	 34.74	0	53386..54735	-	449	183219481	-	LEPBI_I0054	-	hypothetical protein
55	 41.46	0	54824..55069	+	81	183219482	yeaQ	LEPBI_I0055	-	hypothetical protein
56	 45.03	+1	55184..55927	-	247	183219483	-	LEPBI_I0056	-	hypothetical protein
57	 44.22	+1	56051..57217	+	388	183219484	acdA2	LEPBI_I0057	-	Acyl-CoA dehydrogenase
58	 38.25	0	57274..57843	+	189	183219485	trpG2	LEPBI_I0058	-	anthranilate synthase component II
59	 39.08	0	57840..59735	+	631	183219486	-	LEPBI_I0059	-	ABC transporter, atp-binding protein; putative membrane protein
60	 41.04	0	59732..60133	+	133	183219487	-	LEPBI_I0060	-	putative response regulator receiver
61	 39.15	0	60120..61994	-	624	183219488	-	LEPBI_I0061	-	hypothetical protein
62	 41.23	0	62138..63694	+	518	183219489	-	LEPBI_I0062	-	GTP-binding protein
63	 37.37	0	63681..64052	-	123	183219490	-	LEPBI_I0063	-	putative anti-sigma factor antagonist
64	 45.33	+1	64057..65340	-	427	183219491	hom	LEPBI_I0064	-	homoserine dehydrogenase (HDH)
65	 40.00	0	65440..66144	+	234	183219492	-	LEPBI_I0065	-	hypothetical protein
66	 39.54	0	66148..66759	-	203	183219493	-	LEPBI_I0066	-	hypothetical protein
67	 40.38	0	66761..68122	+	453	183219494	-	LEPBI_I0067	-	hypothetical protein
68	 40.26	0	68131..68592	-	153	183219495	-	LEPBI_I0068	-	MarR family transcriptional regulator
69	 42.53	0	68630..70216	-	528	183219496	-	LEPBI_I0069	-	putative dehydrogenase-related protein
70	 38.77	0	70219..71652	-	477	183219497	-	LEPBI_I0070	-	hypothetical protein
71	 41.55	0	71745..72608	+	287	183219498	-	LEPBI_I0071	-	putative S-methyl-5-thioadenosine phosphorylase
72	 36.13	0	72605..72997	-	130	183219499	-	LEPBI_I0072	-	putative anti-sigma factor antagonist
73	 39.15	0	72994..74163	-	389	183219500	galK	LEPBI_I0073	-	galactokinase (galactose kinase)
74	 40.35	0	74208..75560	+	450	183219501	pgi	LEPBI_I0074	-	glucose-6-phosphate isomerase
75	 34.85	0	75537..76259	-	240	183219502	-	LEPBI_I0075	-	putative nucleotide-diphospho-sugar transferase
76	 34.14	-1	76256..77245	-	329	183219503	-	LEPBI_I0076	-	putative kinase
77	 36.71	0	77254..78765	-	503	183219504	-	LEPBI_I0077	-	putative sensor protein
78	 34.00	-1	78758..80551	-	597	183219505	-	LEPBI_I0078	-	ABC transporter ATPase
79	 37.13	0	80553..81422	+	289	183219506	-	LEPBI_I0079	-	putative proline iminopeptidase
80	 43.59	+1	81423..81656	-	77	183219507	-	LEPBI_I0080	-	putative ferredoxin
81	 38.25	0	81706..82071	+	121	183219508	-	LEPBI_I0081	-	putative response regulator
82	 38.24	0	82068..82841	-	257	183219509	-	LEPBI_I0082	-	putative ribosomal RNA methyltransferase, putative hemolysine TlyA-like protein
83	 40.15	0	82822..83745	-	307	183219510	ispA	LEPBI_I0083	-	geranyltranstransferase
84	 43.72	+1	83799..84212	-	137	183219511	ndk	LEPBI_I0084	-	nucleoside diphosphate kinase
85	 41.16	0	84255..86363	-	702	183219512	kefB	LEPBI_I0085	-	glutathione-regulated potassium-efflux system protein KefB; putative membrane protein
86	 40.37	0	86381..86863	-	160	183219513	coaD	LEPBI_I0086	-	phosphopantetheine adenylyltransferase
87	 41.77	0	86865..88073	-	402	183219514	argG	LEPBI_I0087	-	argininosuccinate synthase (citrulline--aspartate ligase)
88	 42.47	0	88155..89303	+	382	183219515	-	LEPBI_I0088	-	putative signal peptide
89	 41.52	0	89314..89814	+	166	183219516	-	LEPBI_I0089	-	putative signal peptide
90	 43.47	+1	89804..91372	+	522	183219517	-	LEPBI_I0090	-	putative oxidase
91	 40.75	0	91365..92564	-	399	183219518	-	LEPBI_I0091	-	putative tRNA (uracil-5-)-methyltransferase
92	 40.32	0	92561..93634	-	357	183219519	pyrD	LEPBI_I0092	-	dihydroorotate dehydrogenase (dihydroorotate oxydase)
93	 36.91	0	93732..95351	+	539	183219520	-	LEPBI_I0093	-	putative sensor protein
94	 37.63	0	95348..96277	+	309	183219521	-	LEPBI_I0094	-	putative two-component response regulator
95	 35.67	0	96280..96921	-	213	183219522	-	LEPBI_I0095	-	putative beta-phosphoglucomutase
96	 36.83	0	96911..97624	-	237	183219523	rluD	LEPBI_I0096	-	pseudouridine synthase (Uracil hydrolyase)
97	 37.51	0	97621..98793	-	390	183219524	-	LEPBI_I0097	-	ankyrin repeat-containing protein
98	 39.09	0	98787..100142	-	451	183219525	-	LEPBI_I0098	-	hypothetical protein
99	 36.73	0	100261..101466	+	401	183219526	-	LEPBI_I0099	-	hypothetical protein
100	 36.79	0	101487..102065	-	192	183219527	-	LEPBI_I0100	-	TetR family transcriptional regulator
38.82	MEAN

4.08	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.