IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1885	 41.05	0	2016756..2017364	-	202	183221312	ccmA	LEPBI_I1929	-	ABC-type transport system, heme exporter protein A, ATP binding protein (protein CcmA)
1886	 39.05	0	2017340..2018389	+	349	183221313	-	LEPBI_I1930	-	TPR repeat-containing signal peptide
1887	 36.76	0	2018344..2019132	-	262	183221314	-	LEPBI_I1931	-	ABC-type transport system, ATP binding
1888	 39.67	0	2019208..2020107	+	299	183221315	mvaB	LEPBI_I1932	-	hydroxymethylglutaryl-CoA lyase
1889	 33.33	-1	2020097..2020993	+	298	183221316	-	LEPBI_I1933	-	hypothetical protein
1890	 39.53	0	2021221..2022495	-	424	183221317	purA	LEPBI_I1934	-	adenylosuccinate synthetase
1891	 36.96	0	2022503..2023549	-	348	183221318	-	LEPBI_I1935	-	putative histidyl-tRNA synthetase
1892	 41.46	0	2023651..2025669	+	672	183221319	gpsA1	LEPBI_I1936	-	glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
1893	 39.48	0	2025659..2027365	-	568	183221320	-	LEPBI_I1937	-	putative histidine kinase sensor protein
1894	 38.15	0	2027592..2028110	-	172	183221321	rplQ	LEPBI_I1938	-	50S ribosomal subunit protein L17
1895	 39.26	0	2028112..2029089	-	325	183221322	rpoA	LEPBI_I1939	-	DNA-directed RNA polymerase alpha chain
1896	 39.65	0	2029115..2029747	-	210	183221323	rpsD	LEPBI_I1940	-	30S ribosomal protein S4
1897	 42.51	0	2029757..2030170	-	137	183221324	rpsK	LEPBI_I1941	-	30S ribosomal protein S11
1898	 43.92	+1	2030182..2030559	-	125	183221325	rpsM	LEPBI_I1942	-	30S ribosomal protein S13
1899	 42.77	0	2030689..2030847	-	52	183221326	infA	LEPBI_I1943	-	translation initiation factor IF-1
1900	 45.28	+1	2030921..2031481	-	186	183221327	adk	LEPBI_I1944	-	adenylate kinase
1901	 40.94	0	2031485..2032864	-	459	183221328	secY	LEPBI_I1945	-	preprotein translocase SecY subunit; putative membrane protein
1902	 44.94	+1	2032871..2033404	-	177	183221329	-	LEPBI_I1946	-	50S ribosomal protein L15
1903	 37.22	0	2033409..2033588	-	59	183221330	rpmD	LEPBI_I1947	-	50S ribosomal protein L30
1904	 43.59	+1	2033603..2034109	-	168	183221331	rpsE	LEPBI_I1948	-	30S ribosomal protein S5
1905	 44.17	+1	2034110..2034478	-	122	183221332	rplR	LEPBI_I1949	-	50S ribosomal protein L18
1906	 45.00	+1	2034485..2035024	-	179	183221333	rplF	LEPBI_I1950	-	50S ribosomal protein L6
1907	 40.85	0	2035039..2035437	-	132	183221334	rpsH	LEPBI_I1951	-	30S ribosomal protein S8
1908	 42.75	0	2035651..2036202	-	183	183221335	rplE	LEPBI_I1952	-	50S ribosomal protein L5
1909	 41.67	0	2036205..2036588	-	127	183221336	rplX	LEPBI_I1953	-	50S ribosomal protein L24
1910	 44.27	+1	2036590..2036982	-	130	183221337	rplN	LEPBI_I1954	-	50S ribosomal protein L14
1911	 38.52	0	2036979..2037248	-	89	183221338	rpsQ	LEPBI_I1955	-	30S ribosomal protein S17
1912	 39.93	0	2037252..2037524	-	90	183221339	rpmC	LEPBI_I1956	-	50S ribosomal protein L29
1913	 43.96	+1	2037521..2037934	-	137	183221340	rplP	LEPBI_I1957	-	50S ribosomal protein L16
1914	 41.45	0	2037957..2038634	-	225	183221341	rpsC	LEPBI_I1958	-	30S ribosomal protein S3
1915	 41.53	0	2038638..2038991	-	117	183221342	rplV	LEPBI_I1959	-	50S ribosomal protein L22
1916	 38.71	0	2038997..2039275	-	92	183221343	rpsS	LEPBI_I1960	-	30S ribosomal protein S19
1917	 43.49	+1	2039289..2040125	-	278	183221344	rplB	LEPBI_I1961	-	50S ribosomal protein L2
1918	 39.87	0	2040128..2040433	-	101	183221345	rplW	LEPBI_I1962	-	50S ribosomal protein L23
1919	 42.14	0	2040438..2041073	-	211	183221346	rplD	LEPBI_I1963	-	50S ribosomal protein L4
1920	 44.71	+1	2041085..2041708	-	207	183221347	rplC	LEPBI_I1964	-	50S ribosomal protein L3
1921	 41.75	0	2041720..2042028	-	102	183221348	rpsJ	LEPBI_I1965	-	30S ribosomal protein S10
1922	 42.70	0	2042033..2043238	-	401	183221349	tuf	LEPBI_I1966	-	elongation factor Tu (EF-Tu)
1923	 44.57	+1	2043288..2045219	-	643	183221350	-	LEPBI_I1967	-	putative elongation factor G
1924	 43.04	+1	2045290..2045763	-	157	183221351	rpsG	LEPBI_I1968	-	30S ribosomal protein S7
1925	 47.20	+2	2045778..2046152	-	124	183221352	rpsL	LEPBI_I1969	-	30S ribosomal protein S12
1926	 45.19	+1	2046300..2050601	-	1433	183221353	rpoC	LEPBI_I1971	-	DNA-directed RNA polymerase beta' chain
1927	 44.24	+1	2050616..2054302	-	1228	183221354	rpoB	LEPBI_I1972	-	DNA-directed RNA polymerase subunit beta
1928	 46.35	+1	2054428..2054811	-	127	183221355	rplL	LEPBI_I1973	-	50S ribosomal protein L7/L12
1929	 43.26	+1	2054847..2055380	-	177	183221356	rplJ	LEPBI_I1974	-	50S ribosomal protein L10
1930	 44.16	+1	2055393..2056085	-	230	183221357	rplA	LEPBI_I1975	-	50S ribosomal protein L1
1931	 44.37	+1	2056111..2056536	-	141	183221358	rplK	LEPBI_I1976	-	50S ribosomal protein L11
1932	 41.26	0	2056576..2057130	-	184	183221359	nusG	LEPBI_I1977	-	transcription antitermination protein NusG
1933	 38.10	0	2057140..2057328	-	62	183221360	secE	LEPBI_I1978	-	preprotein translocase SecE subunit
1934	 41.56	0	2057735..2058427	+	230	183221361	-	LEPBI_I1979	-	hypothetical protein
1935	 46.09	+1	2058501..2059268	+	255	183221362	fabG3a	LEPBI_I1980	-	3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase)
1936	 36.00	0	2059418..2059717	+	99	183221363	-	LEPBI_I1981	-	ArsR family transcriptional regulator
1937	 39.40	0	2059721..2060692	-	323	183221364	hldD	LEPBI_I1982	-	ADP-L-glycero-D-manno-heptose-6-epimerase
1938	 45.74	+1	2060775..2062547	-	590	183221365	-	LEPBI_I1983	-	putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
1939	 39.61	0	2062601..2064145	+	514	183221366	-	LEPBI_I1984	-	hypothetical protein
1940	 32.79	-1	2064171..2065643	-	490	183221367	-	LEPBI_I1985	-	putative acyltransferase; putative membrane protein
1941	 32.39	-1	2065753..2067345	+	530	183221368	-	LEPBI_I1986	-	hypothetical protein
1942	 28.50	-2	2067351..2068859	+	502	183221369	-	LEPBI_I1987	-	putative signal peptide
1943	 31.37	-1	2068922..2069074	-	50	183221370	-	LEPBI_I1988	-	hypothetical protein
1944	 30.10	-2	2069147..2070508	-	453	183221371	-	LEPBI_I1989	-	hypothetical protein
1945	 32.51	-1	2070546..2070788	-	80	183221372	-	LEPBI_I1990	-	hypothetical protein
1946	 38.79	0	2070832..2071821	-	329	183221373	-	LEPBI_I1991	-	putative glycosyltransferase
1947	 31.70	-1	2071920..2073323	-	467	183221374	-	LEPBI_I1992	-	hypothetical protein
1948	 31.58	-1	2073320..2074855	-	511	183221375	-	LEPBI_I1993	-	hypothetical protein
1949	 34.65	-1	2074858..2075997	-	379	183221376	-	LEPBI_I1994	-	putative glycosyltransferase
1950	 30.10	-2	2075994..2077940	-	648	183221377	-	LEPBI_I1995	-	hypothetical protein
1951	 37.13	0	2077945..2078655	-	236	183221378	-	LEPBI_I1996	-	putative glycosyltransferase
1952	 36.73	0	2078810..2079574	-	254	183221379	-	LEPBI_I1997	-	putative glycosyltransferase
1953	 36.89	0	2079629..2080753	-	374	183221380	glf	LEPBI_I1998	-	UDP-galactopyranose mutase
1954	 33.33	-1	2080750..2081679	-	309	183221381	-	LEPBI_I1999	-	hypothetical protein
1955	 32.68	-1	2081669..2082889	-	406	183221382	-	LEPBI_Ia1994	-	putative glycosyl transferase, group 1
1956	 35.20	0	2082873..2084102	-	409	183221383	-	LEPBI_I2001	-	putative glycosyltransferase
1957	 32.02	-1	2084161..2084388	-	75	183221384	-	LEPBI_I2002	-	hypothetical protein
1958	 34.76	0	2084396..2085307	-	303	183221385	-	LEPBI_I2003	-	putative glycosyltransferase
1959	 31.39	-1	2085314..2086597	-	427	183221386	-	LEPBI_I2004	-	hypothetical protein
1960	 37.18	0	2086594..2087580	-	328	183221387	serA1	LEPBI_I2005	-	D-3-phosphoglycerate dehydrogenase (PGDH)
1961	 31.22	-1	2087622..2088662	-	346	183221388	-	LEPBI_I2006	-	putative alginate biosynthesis protein AlgJ precursor
1962	 32.24	-1	2088662..2089117	-	151	183221389	-	LEPBI_I2007	-	hypothetical protein
1963	 32.19	-1	2089159..2090034	-	291	183221390	-	LEPBI_I2008	-	putative poly(beta-D-mannuronate) O-acetylase (alginate biosynthesis protein AlgI)
1964	 31.26	-1	2090093..2091058	-	321	183221391	-	LEPBI_I2009	-	putative glycosyltransferase
1965	 31.44	-1	2091045..2092256	-	403	183221392	-	LEPBI_I2010	-	putative glycosyltransferase
1966	 32.64	-1	2092263..2093696	-	477	183221393	-	LEPBI_I2011	-	hypothetical protein
1967	 34.14	-1	2093700..2094812	-	370	183221394	-	LEPBI_I2012	-	putative pyridoxal-phosphate-dependent aminotransferase
1968	 33.10	-1	2094805..2095239	-	144	183221395	-	LEPBI_I2013	-	hypothetical protein
1969	 31.75	-1	2095248..2095940	-	230	183221396	-	LEPBI_I2014	-	hypothetical protein
1970	 33.39	-1	2095937..2097649	-	570	183221397	-	LEPBI_I2015	-	hypothetical protein
1971	 31.86	-1	2097688..2098365	-	225	183221398	-	LEPBI_I2016	-	putative SAM-dependent methyltransferase
1972	 36.46	0	2098393..2099673	-	426	183221399	-	LEPBI_I2017	-	ABC-type transport system, ATP binding protein
1973	 31.62	-1	2099705..2100580	-	291	183221400	-	LEPBI_I2018	-	ABC-type transport system, permease component
1974	 34.74	0	2100658..2101653	-	331	183221401	-	LEPBI_I2019	-	putative transferase
1975	 34.26	-1	2101650..2102726	-	358	183221402	-	LEPBI_I2020	-	hypothetical protein
1976	 34.76	0	2102740..2104491	-	583	183221403	-	LEPBI_I2021	-	hypothetical protein
1977	 33.70	-1	2104557..2105102	-	181	183221404	-	LEPBI_I2022	-	putative acetyltransferase
1978	 33.23	-1	2105099..2106103	-	334	183221405	-	LEPBI_I2023	-	hypothetical protein
1979	 35.61	0	2106100..2107374	-	424	183221406	-	LEPBI_I2024	-	putative aminotransferase
1980	 34.04	-1	2107375..2108367	-	330	183221407	-	LEPBI_I2025	-	hypothetical protein
1981	 35.07	0	2108364..2109113	-	249	183221408	-	LEPBI_I2026	-	putative acylneuraminate cytidylyltransferase
1982	 39.06	0	2109117..2110163	-	348	183221409	-	LEPBI_I2027	-	N-acetylneuraminic acid (Neu5Ac) synthase NeuB family
1983	 38.91	0	2110160..2110840	-	226	183221410	-	LEPBI_I2028	-	putative methionyl-tRNA formyltransferase
1984	 38.22	0	2110846..2111520	-	224	183221411	-	LEPBI_I2029	-	hypothetical protein
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.