IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1822	 45.30	+1	1955987..1956763	+	258	183221249	-	LEPBI_I1865	-	ABC-type transport system, permease; putative resistance to organic solvant; putative membrane protein
1823	 43.73	+1	1956772..1957560	+	262	183221250	-	LEPBI_I1866	-	ABC-type transport system, ATP-binding protein; putative resistance to organic solvant
1824	 44.83	+1	1957593..1958366	+	257	183221251	-	LEPBI_I1867	-	putative ABC transporter
1825	 47.85	+2	1958545..1959453	+	302	183221252	lpxC	LEPBI_I1868	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase)
1826	 42.13	0	1959516..1961243	+	575	183221253	ptsI	LEPBI_I1869	-	phosphoenolpyruvate-protein phosphotransferase (phosphotransferase system, enzyme I)
1827	 41.44	0	1961265..1962596	-	443	183221254	-	LEPBI_I1870	-	major facilitator superfamily permease
1828	 42.76	0	1962638..1963210	-	190	183221255	-	LEPBI_I1871	-	putative cobalamin adenosyltransferase
1829	 42.22	0	1963407..1964261	+	284	183221256	flaB4	LEPBI_I1872	-	flagellar filament 35 kDa core protein (flagellin class B; 35 kDa antigen)
1830	 41.42	0	1964275..1965090	+	271	183221257	-	LEPBI_I1873	-	OmpA domain-containing protein
1831	 39.88	0	1965196..1965516	-	106	183221258	-	LEPBI_I1874	-	hypothetical protein
1832	 37.61	0	1965579..1966958	+	459	183221259	-	LEPBI_I1875	-	putative cyclic-nucleotide-gated cation channel; putative membrane protein
1833	 39.79	0	1966976..1967749	-	257	183221260	-	LEPBI_I1876	-	putative ParA family protein
1834	 32.57	-1	1967833..1968225	+	130	183221261	-	LEPBI_I1877	-	hypothetical protein
1835	 34.21	-1	1968222..1969703	+	493	183221262	-	LEPBI_I1878	-	hypothetical protein
1836	 38.77	0	1969736..1971610	+	624	183221263	-	LEPBI_I1879	-	long-chain acyl-CoA synthetase, AMP-forming
1837	 38.33	0	1971607..1974186	-	859	183221264	pepN1	LEPBI_I1880	-	aminopeptidase N
1838	 38.15	0	1974228..1974497	-	89	183221265	rbpA2	LEPBI_I1881	-	RNA binding protein
1839	 38.78	0	1974642..1976312	+	556	183221266	-	LEPBI_I1882	-	putative two-component response regulator
1840	 42.11	0	1976301..1978772	-	823	183221267	fecA	LEPBI_I1883	-	Iron(III) dicitrate TonB-dependent receptor; putative signal peptide
1841	 37.16	0	1978848..1979945	+	365	183221268	-	LEPBI_I1885	-	hypothetical protein
1842	 38.82	0	1980010..1980264	-	84	183221269	-	LEPBI_I1886	-	hypothetical protein
1843	 40.70	0	1980395..1981846	+	483	183221270	-	LEPBI_I1887	-	putative amino acid permease
1844	 38.78	0	1981874..1982497	-	207	183221271	-	LEPBI_I1888	-	hypothetical protein
1845	 38.33	0	1982509..1982748	+	79	183221272	-	LEPBI_I1889	-	hypothetical protein
1846	 39.43	0	1982799..1983881	+	360	183221273	-	LEPBI_I1890	-	hypothetical protein
1847	 36.53	0	1983876..1984313	-	145	183221274	-	LEPBI_I1891	-	hypothetical protein
1848	 39.77	0	1984383..1985267	+	294	183221275	-	LEPBI_I1892	-	alpha/beta family hydrolase
1849	 39.12	0	1985336..1985767	+	143	183221276	-	LEPBI_I1893	-	hypothetical protein
1850	 27.75	-2	1985878..1986897	-	339	183221277	-	LEPBI_I1894	-	hypothetical protein
1851	 41.86	0	1987505..1988782	+	425	183221278	-	LEPBI_I1895	-	hypothetical protein
1852	 36.46	0	1988875..1989513	+	212	183221279	-	LEPBI_I1896	-	putative signal peptide
1853	 42.24	0	1989515..1991008	+	497	183221280	lysS	LEPBI_I1897	-	lysyl-tRNA synthetase (lysine--tRNA ligase; LysRS)
1854	 38.98	0	1991169..1991717	-	182	183221281	-	LEPBI_I1898	-	hypothetical protein
1855	 40.28	0	1991775..1992998	+	407	183221282	serA2	LEPBI_I1899	-	D-3-phosphoglycerate dehydrogenase (PGDH)
1856	 40.67	0	1993023..1993799	+	258	183221283	-	LEPBI_I1900	-	putative hydroxyacylglutathione hydrolase
1857	 39.95	0	1993845..1994237	+	130	183221284	-	LEPBI_I1901	-	putative signal peptide
1858	 42.38	0	1994246..1995019	+	257	183221285	endA	LEPBI_I1902	-	endonuclease I; putative signal peptide
1859	 42.93	+1	1995133..1996518	+	461	183221286	lpdA2	LEPBI_I1903	-	dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; dihydrolipoamide dehydrogenase)
1860	 38.08	0	1996515..1997546	+	343	183221287	-	LEPBI_I1904	-	hypothetical protein
1861	 38.56	0	1997547..1998464	+	305	183221288	-	LEPBI_I1905	-	ABC-type transport system, ATP binding protein
1862	 35.02	0	1998467..1999237	+	256	183221289	-	LEPBI_I1906	-	ABC-type transport system, permease
1863	 43.14	+1	1999257..1999511	+	84	183221290	-	LEPBI_I1907	-	putative BolA-like protein
1864	 38.24	0	1999517..2000188	+	223	183221291	-	LEPBI_I1908	-	putative glutathione S-transferase protein
1865	 38.67	0	2000190..2000414	+	74	183221292	-	LEPBI_I1909	-	putative BolA-like protein
1866	 38.83	0	2000417..2000725	+	102	183221293	-	LEPBI_I1910	-	putative glutaredoxin-related protein
1867	 43.62	+1	2000730..2000972	+	80	183221294	-	LEPBI_I1911	-	putative glutathione S-transferase
1868	 40.08	0	2001133..2002140	-	335	183221295	gshB	LEPBI_I1912	-	glutathione synthase
1869	 36.27	0	2002142..2003743	-	533	183221296	gshA	LEPBI_I1913	-	glutamate--cysteine ligase (gamma-glutamylcysteine synthetase; gamma-ECS) (GCS)
1870	 42.53	0	2003747..2005519	-	590	183221297	ggtA	LEPBI_I1914	-	gamma-glutamyltranspeptidase (gamma-glutamyltransferase large chain; gamma-glutamyltransferase small) chain
1871	 45.06	+1	2005516..2005839	-	107	183221298	-	LEPBI_I1915	-	putative metal-sulfur cluster biosynthetic enzyme
1872	 34.67	-1	2005836..2006135	-	99	183221299	-	LEPBI_I1916	-	NifU-like domain-containing protein
1873	 40.64	0	2006245..2007489	-	414	183221300	sufS	LEPBI_I1917	-	cysteine desulfurase
1874	 40.25	0	2007486..2007803	-	105	183221301	-	LEPBI_I1918	-	reductase/dioxygenase
1875	 38.14	0	2007800..2008963	-	387	183221302	-	LEPBI_I1919	-	hypothetical protein
1876	 42.50	0	2008960..2009712	-	250	183221303	sufC	LEPBI_I1920	-	ABC-type transport system associated with Fe-S cluster assembly, ATPase
1877	 43.26	+1	2009804..2011042	-	412	183221304	-	LEPBI_I1921	-	putative diguanylate phosphodiesterase
1878	 43.22	+1	2011160..2012443	-	427	183221305	glgC	LEPBI_I1922	-	glucose-1-phosphate adenylyltransferase small subunit
1879	 41.82	0	2012498..2013145	-	215	183221306	purQ	LEPBI_I1923	-	phosphoribosylformylglycinamidine synthase I (FGAM synthase I)
1880	 40.16	0	2013142..2013390	-	82	183221307	purS	LEPBI_I1924	-	phosphorybosylformylglycinamidine synthase PurS component
1881	 41.49	0	2013372..2014229	-	285	183221308	purC	LEPBI_I1925	-	phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase)
1882	 38.21	0	2014226..2015353	-	375	183221309	-	LEPBI_I1926	-	putative two-component regulator
1883	 39.48	0	2015360..2016058	-	232	183221310	ccmC	LEPBI_I1927	-	cytochrome c-type biogenesis protein CcmC
1884	 39.39	0	2016113..2016772	-	219	183221311	ccmB	LEPBI_I1928	-	cytochrome c-type biogenesis protein CcmB
1885	 41.05	0	2016756..2017364	-	202	183221312	ccmA	LEPBI_I1929	-	ABC-type transport system, heme exporter protein A, ATP binding protein (protein CcmA)
1886	 39.05	0	2017340..2018389	+	349	183221313	-	LEPBI_I1930	-	TPR repeat-containing signal peptide
1887	 36.76	0	2018344..2019132	-	262	183221314	-	LEPBI_I1931	-	ABC-type transport system, ATP binding
1888	 39.67	0	2019208..2020107	+	299	183221315	mvaB	LEPBI_I1932	-	hydroxymethylglutaryl-CoA lyase
1889	 33.33	-1	2020097..2020993	+	298	183221316	-	LEPBI_I1933	-	hypothetical protein
1890	 39.53	0	2021221..2022495	-	424	183221317	purA	LEPBI_I1934	-	adenylosuccinate synthetase
1891	 36.96	0	2022503..2023549	-	348	183221318	-	LEPBI_I1935	-	putative histidyl-tRNA synthetase
1892	 41.46	0	2023651..2025669	+	672	183221319	gpsA1	LEPBI_I1936	-	glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
1893	 39.48	0	2025659..2027365	-	568	183221320	-	LEPBI_I1937	-	putative histidine kinase sensor protein
1894	 38.15	0	2027592..2028110	-	172	183221321	rplQ	LEPBI_I1938	-	50S ribosomal subunit protein L17
1895	 39.26	0	2028112..2029089	-	325	183221322	rpoA	LEPBI_I1939	-	DNA-directed RNA polymerase alpha chain
1896	 39.65	0	2029115..2029747	-	210	183221323	rpsD	LEPBI_I1940	-	30S ribosomal protein S4
1897	 42.51	0	2029757..2030170	-	137	183221324	rpsK	LEPBI_I1941	-	30S ribosomal protein S11
1898	 43.92	+1	2030182..2030559	-	125	183221325	rpsM	LEPBI_I1942	-	30S ribosomal protein S13
1899	 42.77	0	2030689..2030847	-	52	183221326	infA	LEPBI_I1943	-	translation initiation factor IF-1
1900	 45.28	+1	2030921..2031481	-	186	183221327	adk	LEPBI_I1944	-	adenylate kinase
1901	 40.94	0	2031485..2032864	-	459	183221328	secY	LEPBI_I1945	-	preprotein translocase SecY subunit; putative membrane protein
1902	 44.94	+1	2032871..2033404	-	177	183221329	-	LEPBI_I1946	-	50S ribosomal protein L15
1903	 37.22	0	2033409..2033588	-	59	183221330	rpmD	LEPBI_I1947	-	50S ribosomal protein L30
1904	 43.59	+1	2033603..2034109	-	168	183221331	rpsE	LEPBI_I1948	-	30S ribosomal protein S5
1905	 44.17	+1	2034110..2034478	-	122	183221332	rplR	LEPBI_I1949	-	50S ribosomal protein L18
1906	 45.00	+1	2034485..2035024	-	179	183221333	rplF	LEPBI_I1950	-	50S ribosomal protein L6
1907	 40.85	0	2035039..2035437	-	132	183221334	rpsH	LEPBI_I1951	-	30S ribosomal protein S8
1908	 42.75	0	2035651..2036202	-	183	183221335	rplE	LEPBI_I1952	-	50S ribosomal protein L5
1909	 41.67	0	2036205..2036588	-	127	183221336	rplX	LEPBI_I1953	-	50S ribosomal protein L24
1910	 44.27	+1	2036590..2036982	-	130	183221337	rplN	LEPBI_I1954	-	50S ribosomal protein L14
1911	 38.52	0	2036979..2037248	-	89	183221338	rpsQ	LEPBI_I1955	-	30S ribosomal protein S17
1912	 39.93	0	2037252..2037524	-	90	183221339	rpmC	LEPBI_I1956	-	50S ribosomal protein L29
1913	 43.96	+1	2037521..2037934	-	137	183221340	rplP	LEPBI_I1957	-	50S ribosomal protein L16
1914	 41.45	0	2037957..2038634	-	225	183221341	rpsC	LEPBI_I1958	-	30S ribosomal protein S3
1915	 41.53	0	2038638..2038991	-	117	183221342	rplV	LEPBI_I1959	-	50S ribosomal protein L22
1916	 38.71	0	2038997..2039275	-	92	183221343	rpsS	LEPBI_I1960	-	30S ribosomal protein S19
1917	 43.49	+1	2039289..2040125	-	278	183221344	rplB	LEPBI_I1961	-	50S ribosomal protein L2
1918	 39.87	0	2040128..2040433	-	101	183221345	rplW	LEPBI_I1962	-	50S ribosomal protein L23
1919	 42.14	0	2040438..2041073	-	211	183221346	rplD	LEPBI_I1963	-	50S ribosomal protein L4
1920	 44.71	+1	2041085..2041708	-	207	183221347	rplC	LEPBI_I1964	-	50S ribosomal protein L3
1921	 41.75	0	2041720..2042028	-	102	183221348	rpsJ	LEPBI_I1965	-	30S ribosomal protein S10
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.