IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1771	 38.33	0	1893063..1893863	+	266	183221198	-	LEPBI_I1812	-	putative signal peptide
1772	 38.15	0	1893866..1894696	-	276	183221199	-	LEPBI_I1813	-	hypothetical protein
1773	 38.54	0	1894767..1896359	-	530	183221200	-	LEPBI_I1814	-	putative permease; putative membrane protein
1774	 37.84	0	1896352..1897728	-	458	183221201	-	LEPBI_I1815	-	putative tRNA-i(6)A37 modification enzyme MiaB
1775	 38.72	0	1897791..1898384	+	197	183221202	-	LEPBI_I1816	-	putative chaperone protein DnaJ
1776	 34.22	-1	1898381..1899511	-	376	183221203	-	LEPBI_I1817	-	hypothetical protein
1777	 34.67	-1	1899513..1900937	-	474	183221204	-	LEPBI_I1818	-	putative poly(beta-D-mannuronate) O-acetylase (alginate biosynthesis protein AlgI); putative membrane protein; putative signal peptide
1778	 35.36	0	1900963..1902144	-	393	183221205	-	LEPBI_I1819	-	hypothetical protein
1779	 34.97	0	1902406..1904727	+	773	183221206	-	LEPBI_I1820	-	putative signal peptide
1780	 35.48	0	1904702..1905541	-	279	183221207	uppP	LEPBI_I1821	-	undecaprenyl-diphosphatase
1781	 35.99	0	1905548..1906225	-	225	183221208	lipL31	LEPBI_I1822	-	LipL31; putative signal peptide
1782	 37.89	0	1906326..1909748	-	1140	183221209	mfd	LEPBI_I1823	-	transcription-repair coupling factor
1783	 37.56	0	1909758..1910609	-	283	183221210	panC	LEPBI_I1824	-	pantoate--beta-alanine ligase
1784	 43.54	+1	1910606..1911898	-	430	183221211	hisD	LEPBI_I1825	-	histidinol dehydrogenase
1785	 40.95	0	1911942..1913018	-	358	183221212	-	LEPBI_I1826	-	hypothetical protein
1786	 37.01	0	1913113..1915236	-	707	183221213	-	LEPBI_I1827	-	hypothetical protein
1787	 40.16	0	1915244..1918069	-	941	183221214	-	LEPBI_I1828	-	putative adenylate cyclase
1788	 41.12	0	1918120..1918890	+	256	183221215	exoA	LEPBI_I1829	-	exodeoxyribonuclease
1789	 37.86	0	1918924..1919895	+	323	183221216	-	LEPBI_I1830	-	hypothetical protein
1790	 42.77	0	1919950..1920585	-	211	183221217	-	LEPBI_I1831	-	putative lipoprotein; putative signal peptide
1791	 42.02	0	1920649..1922052	-	467	183221218	-	LEPBI_I1832	-	putative divalent cation transporter; putative MgtE transporter; putative membrane protein
1792	 40.26	0	1922118..1922810	+	230	183221219	-	LEPBI_I1833	-	hypothetical protein
1793	 38.03	0	1922797..1923861	+	354	183221220	-	LEPBI_I1834	-	hypothetical protein
1794	 40.57	0	1923854..1924834	+	326	183221221	-	LEPBI_I1835	-	putative cation efflux system protein; putative membrane protein; putative signal peptide
1795	 41.03	0	1924843..1925895	-	350	183221222	-	LEPBI_I1836	-	putative acyl-CoA dehydrogenase
1796	 43.14	+1	1925901..1928765	-	954	183221223	uvrA	LEPBI_I1837	-	excinuclease ABC subunit A
1797	 39.45	0	1928834..1930468	+	544	183221224	-	LEPBI_I1838	-	S49 family peptidase
1798	 42.63	0	1930618..1931574	-	318	183221225	-	LEPBI_I1839	-	putative translation factor SUA5
1799	 42.69	0	1931636..1933216	-	526	183221226	-	LEPBI_I1840	-	putative glycosidase
1800	 42.62	0	1933362..1934072	+	236	183221227	-	LEPBI_I1841	-	hypothetical protein
1801	 43.53	+1	1934077..1934841	+	254	183221228	ugpQ	LEPBI_I1842	-	glycerophosphoryl diester phosphodiesterase (glycerophosphodiester phosphodiesterase)
1802	 42.92	+1	1934826..1935065	-	79	183221229	-	LEPBI_I1843	-	hypothetical protein
1803	 39.87	0	1935201..1936592	+	463	183221230	-	LEPBI_I1844	-	hypothetical protein
1804	 47.64	+2	1936625..1938127	+	500	183221231	leuA	LEPBI_I1845	-	2-isopropylmalate synthase (Alpha-isopropylmalate synthase; Alpha-IPM synthetase)
1805	 41.19	0	1938131..1939225	+	364	183221232	hisC	LEPBI_I1846	-	histidinol-phosphate aminotransferase (imidazole acetol-phosphate transaminase)
1806	 37.04	0	1939332..1939736	-	134	183221233	-	LEPBI_I1848	-	Hsp20 family heat-shock protein
1807	 40.77	0	1939745..1940188	-	147	183221234	-	LEPBI_I1849	-	heat shock protein IbpB
1808	 44.73	+1	1940336..1940800	+	154	183221235	-	LEPBI_I1850	-	hypothetical protein
1809	 31.52	-1	1940797..1941348	+	183	183221236	-	LEPBI_I1851	-	hypothetical protein
1810	 40.51	0	1941403..1943673	-	756	183221237	clpA	LEPBI_I1852	-	ATP-dependent Clp protease ATP-binding subunit ClpA
1811	 35.96	0	1943670..1944011	-	113	183221238	clpS	LEPBI_I1853	-	ATP-dependent Clp protease adaptor protein Clp
1812	 39.52	0	1944011..1945174	-	387	183221239	-	LEPBI_I1854	-	hypothetical protein
1813	 37.63	0	1945178..1948339	-	1053	183221240	-	LEPBI_I1855	-	putative histidine kinase sensor protein; putative membrane protein
1814	 38.47	0	1948367..1949008	-	213	183221241	-	LEPBI_I1856	-	hypothetical protein
1815	 37.64	0	1949088..1949528	+	146	183221242	-	LEPBI_I1858	-	hypothetical protein
1816	 35.32	0	1949531..1950640	+	369	183221243	-	LEPBI_I1859	-	putative signal peptide
1817	 41.59	0	1950641..1951936	+	431	183221244	xseA	LEPBI_I1860	-	exodeoxyribonuclease VII large subunit (exonuclease VII large subunit)
1818	 35.87	0	1951926..1952201	+	91	183221245	xseB	LEPBI_I1861	-	exodeoxyribonuclease VII small subunit (exonuclease VII small subunit)
1819	 40.96	0	1952205..1953515	+	436	183221246	-	LEPBI_I1862	-	sodium:solute symporter family protein
1820	 42.29	0	1953484..1954533	-	349	183221247	ddlB	LEPBI_I1863	-	D-alanine--D-alanine ligase B (D-alanylalanine synthetase B; D-Ala-D-Ala ligase B)
1821	 37.38	0	1954581..1955990	+	469	183221248	-	LEPBI_I1864	-	putative signal PEP)tide
1822	 45.30	+1	1955987..1956763	+	258	183221249	-	LEPBI_I1865	-	ABC-type transport system, permease; putative resistance to organic solvant; putative membrane protein
1823	 43.73	+1	1956772..1957560	+	262	183221250	-	LEPBI_I1866	-	ABC-type transport system, ATP-binding protein; putative resistance to organic solvant
1824	 44.83	+1	1957593..1958366	+	257	183221251	-	LEPBI_I1867	-	putative ABC transporter
1825	 47.85	+2	1958545..1959453	+	302	183221252	lpxC	LEPBI_I1868	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase)
1826	 42.13	0	1959516..1961243	+	575	183221253	ptsI	LEPBI_I1869	-	phosphoenolpyruvate-protein phosphotransferase (phosphotransferase system, enzyme I)
1827	 41.44	0	1961265..1962596	-	443	183221254	-	LEPBI_I1870	-	major facilitator superfamily permease
1828	 42.76	0	1962638..1963210	-	190	183221255	-	LEPBI_I1871	-	putative cobalamin adenosyltransferase
1829	 42.22	0	1963407..1964261	+	284	183221256	flaB4	LEPBI_I1872	-	flagellar filament 35 kDa core protein (flagellin class B; 35 kDa antigen)
1830	 41.42	0	1964275..1965090	+	271	183221257	-	LEPBI_I1873	-	OmpA domain-containing protein
1831	 39.88	0	1965196..1965516	-	106	183221258	-	LEPBI_I1874	-	hypothetical protein
1832	 37.61	0	1965579..1966958	+	459	183221259	-	LEPBI_I1875	-	putative cyclic-nucleotide-gated cation channel; putative membrane protein
1833	 39.79	0	1966976..1967749	-	257	183221260	-	LEPBI_I1876	-	putative ParA family protein
1834	 32.57	-1	1967833..1968225	+	130	183221261	-	LEPBI_I1877	-	hypothetical protein
1835	 34.21	-1	1968222..1969703	+	493	183221262	-	LEPBI_I1878	-	hypothetical protein
1836	 38.77	0	1969736..1971610	+	624	183221263	-	LEPBI_I1879	-	long-chain acyl-CoA synthetase, AMP-forming
1837	 38.33	0	1971607..1974186	-	859	183221264	pepN1	LEPBI_I1880	-	aminopeptidase N
1838	 38.15	0	1974228..1974497	-	89	183221265	rbpA2	LEPBI_I1881	-	RNA binding protein
1839	 38.78	0	1974642..1976312	+	556	183221266	-	LEPBI_I1882	-	putative two-component response regulator
1840	 42.11	0	1976301..1978772	-	823	183221267	fecA	LEPBI_I1883	-	Iron(III) dicitrate TonB-dependent receptor; putative signal peptide
1841	 37.16	0	1978848..1979945	+	365	183221268	-	LEPBI_I1885	-	hypothetical protein
1842	 38.82	0	1980010..1980264	-	84	183221269	-	LEPBI_I1886	-	hypothetical protein
1843	 40.70	0	1980395..1981846	+	483	183221270	-	LEPBI_I1887	-	putative amino acid permease
1844	 38.78	0	1981874..1982497	-	207	183221271	-	LEPBI_I1888	-	hypothetical protein
1845	 38.33	0	1982509..1982748	+	79	183221272	-	LEPBI_I1889	-	hypothetical protein
1846	 39.43	0	1982799..1983881	+	360	183221273	-	LEPBI_I1890	-	hypothetical protein
1847	 36.53	0	1983876..1984313	-	145	183221274	-	LEPBI_I1891	-	hypothetical protein
1848	 39.77	0	1984383..1985267	+	294	183221275	-	LEPBI_I1892	-	alpha/beta family hydrolase
1849	 39.12	0	1985336..1985767	+	143	183221276	-	LEPBI_I1893	-	hypothetical protein
1850	 27.75	-2	1985878..1986897	-	339	183221277	-	LEPBI_I1894	-	hypothetical protein
1851	 41.86	0	1987505..1988782	+	425	183221278	-	LEPBI_I1895	-	hypothetical protein
1852	 36.46	0	1988875..1989513	+	212	183221279	-	LEPBI_I1896	-	putative signal peptide
1853	 42.24	0	1989515..1991008	+	497	183221280	lysS	LEPBI_I1897	-	lysyl-tRNA synthetase (lysine--tRNA ligase; LysRS)
1854	 38.98	0	1991169..1991717	-	182	183221281	-	LEPBI_I1898	-	hypothetical protein
1855	 40.28	0	1991775..1992998	+	407	183221282	serA2	LEPBI_I1899	-	D-3-phosphoglycerate dehydrogenase (PGDH)
1856	 40.67	0	1993023..1993799	+	258	183221283	-	LEPBI_I1900	-	putative hydroxyacylglutathione hydrolase
1857	 39.95	0	1993845..1994237	+	130	183221284	-	LEPBI_I1901	-	putative signal peptide
1858	 42.38	0	1994246..1995019	+	257	183221285	endA	LEPBI_I1902	-	endonuclease I; putative signal peptide
1859	 42.93	+1	1995133..1996518	+	461	183221286	lpdA2	LEPBI_I1903	-	dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; dihydrolipoamide dehydrogenase)
1860	 38.08	0	1996515..1997546	+	343	183221287	-	LEPBI_I1904	-	hypothetical protein
1861	 38.56	0	1997547..1998464	+	305	183221288	-	LEPBI_I1905	-	ABC-type transport system, ATP binding protein
1862	 35.02	0	1998467..1999237	+	256	183221289	-	LEPBI_I1906	-	ABC-type transport system, permease
1863	 43.14	+1	1999257..1999511	+	84	183221290	-	LEPBI_I1907	-	putative BolA-like protein
1864	 38.24	0	1999517..2000188	+	223	183221291	-	LEPBI_I1908	-	putative glutathione S-transferase protein
1865	 38.67	0	2000190..2000414	+	74	183221292	-	LEPBI_I1909	-	putative BolA-like protein
1866	 38.83	0	2000417..2000725	+	102	183221293	-	LEPBI_I1910	-	putative glutaredoxin-related protein
1867	 43.62	+1	2000730..2000972	+	80	183221294	-	LEPBI_I1911	-	putative glutathione S-transferase
1868	 40.08	0	2001133..2002140	-	335	183221295	gshB	LEPBI_I1912	-	glutathione synthase
1869	 36.27	0	2002142..2003743	-	533	183221296	gshA	LEPBI_I1913	-	glutamate--cysteine ligase (gamma-glutamylcysteine synthetase; gamma-ECS) (GCS)
1870	 42.53	0	2003747..2005519	-	590	183221297	ggtA	LEPBI_I1914	-	gamma-glutamyltranspeptidase (gamma-glutamyltransferase large chain; gamma-glutamyltransferase small) chain
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.