IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1237	 39.30	0	1319716..1320486	+	256	183220664	-	LEPBI_I1273	-	putative signal peptide
1238	 40.09	0	1320499..1321179	+	226	183220665	-	LEPBI_I1274	-	hypothetical protein
1239	 39.23	0	1321551..1323026	+	491	183220666	-	LEPBI_I1276	-	hypothetical protein
1240	 38.40	0	1323027..1324211	+	394	183220667	-	LEPBI_I1277	-	hypothetical protein
1241	 38.30	0	1324224..1325009	+	261	183220668	-	LEPBI_I1278	-	hypothetical protein
1242	 42.90	0	1325197..1330800	+	1867	183220669	-	LEPBI_I1279	-	putative signal peptide
1243	 39.01	0	1330830..1333103	+	757	183220670	-	LEPBI_I1280	-	putative sulfatase; putative membrane protein
1244	 41.73	0	1333121..1336432	+	1103	183220671	carB	LEPBI_I1281	-	carbamoyl-phosphate synthase large subunit
1245	 37.50	0	1336539..1336994	-	151	183220672	-	LEPBI_I1282	-	hypothetical protein
1246	 35.57	0	1337019..1338272	-	417	183220673	-	LEPBI_I1283	-	hypothetical protein
1247	 37.12	0	1338269..1339957	-	562	183220674	-	LEPBI_I1284	-	hypothetical protein
1248	 42.46	0	1340001..1342028	-	675	183220675	ispG	LEPBI_I1285	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
1249	 41.55	0	1342247..1342453	+	68	183220676	-	LEPBI_I1286	-	hypothetical protein
1250	 38.98	0	1342450..1343511	+	353	183220677	-	LEPBI_I1287	-	putative A/G-specific DNA glycosylase
1251	 38.68	0	1343536..1346247	+	903	183220678	-	LEPBI_I1288	-	hypothetical protein
1252	 42.45	0	1346263..1346679	+	138	183220679	-	LEPBI_I1289	-	putative two-component response regulator
1253	 45.65	+1	1346701..1346976	+	91	183220680	-	LEPBI_I1290	-	putative DNA mismatch repair protein
1254	 42.19	0	1346973..1348508	+	511	183220681	leuA1	LEPBI_I1291	-	2-isopropylmalate synthase (Alpha-isopropylmalate synthase; Alpha-IPM synthetase 1)
1255	 43.03	+1	1348505..1349071	+	188	183220682	pthA	LEPBI_I1292	-	peptidyl-tRNA hydrolase (PTH)
1256	 42.33	0	1349122..1349721	+	199	183220683	-	LEPBI_I1293	-	putative cytoplasmic membrane protein
1257	 38.74	0	1349723..1349944	+	73	183220684	-	LEPBI_I1294	-	hypothetical protein
1258	 46.11	+1	1349946..1351205	+	419	183220685	-	LEPBI_I1295	-	putative ATPase involved in DNA replication
1259	 39.90	0	1351303..1351698	+	131	183220686	nuoA	LEPBI_I1296	-	NADH-quinone oxidoreductase, chain A
1260	 45.81	+1	1351689..1352249	+	186	183220687	nuoB	LEPBI_I1297	-	NADH-quinone oxidoreductase chain B
1261	 43.30	+1	1352246..1352767	+	173	183220688	nuoC	LEPBI_I1298	-	NADH-quinone oxidoreductase, chain C
1262	 43.24	+1	1352784..1354004	+	406	183220689	nuoD	LEPBI_I1299	-	NADH-quinone oxidoreductase, chain D
1263	 41.21	0	1353998..1354492	+	164	183220690	nuoE	LEPBI_I1300	-	NADH-quinone oxidoreductase, chain E
1264	 43.87	+1	1354494..1355765	+	423	183220691	nuoF	LEPBI_I1301	-	NADH-quinone oxidoreductase, chain F
1265	 43.98	+1	1355781..1356851	+	356	183220692	nuoH	LEPBI_I1302	-	NADH-quinone oxidoreductase, chain H
1266	 40.83	0	1356848..1357447	+	199	183220693	nuoJ	LEPBI_I1303	-	NADH-quinone oxidoreductase, chain J
1267	 42.99	+1	1357444..1357764	+	106	183220694	nuoK	LEPBI_I1304	-	NADH-quinone oxidoreductase, chain K
1268	 39.76	0	1357769..1359697	+	642	183220695	nuoL	LEPBI_I1305	-	NADH-quinone oxidoreductase, chain L
1269	 39.83	0	1359699..1361438	+	579	183220696	nuoM	LEPBI_I1306	-	NADH-quinone oxidoreductase, chain M
1270	 41.37	0	1361442..1362884	+	480	183220697	nuoN	LEPBI_I1307	-	NADH-quinone oxidoreductase, chain N
1271	 41.67	0	1362970..1363509	+	179	183220698	-	LEPBI_I1308	-	putative acireductone dioxygenase, ARD
1272	 40.93	0	1363581..1365569	-	662	183220699	recJ	LEPBI_I1309	-	single-stranded-DNA-specific exonuclease RecJ
1273	 37.69	0	1365590..1365910	-	106	183220700	-	LEPBI_I1310	-	hypothetical protein
1274	 42.20	0	1366064..1366390	+	108	183220701	-	LEPBI_I1311	-	hypothetical protein
1275	 42.78	0	1366464..1369754	+	1096	183220702	-	LEPBI_I1312	-	putative heavy metal efflux pump CzcA; putative signal peptide
1276	 39.90	0	1369755..1370378	+	207	183220703	ppa	LEPBI_I1313	-	inorganic pyrophosphatase (pyrophosphate phospho-hydrolase; PPase)
1277	 37.33	0	1370375..1371700	+	441	183220704	-	LEPBI_I1314	-	putative cation efflux system protein CzcC
1278	 38.24	0	1371707..1372888	+	393	183220705	-	LEPBI_I1315	-	putative cobalt-zinc-cadmium resistance protein CzcB
1279	 47.45	+2	1372939..1373547	+	202	183220706	lexA	LEPBI_I1316	-	LexA repressor
1280	 40.89	0	1373584..1373874	+	96	183220707	-	LEPBI_I1317	-	hypothetical protein
1281	 37.86	0	1373867..1375237	+	456	183220708	-	LEPBI_I1318	-	putative carboxy-terminal processing protease
1282	 40.84	0	1375238..1376263	+	341	183220709	-	LEPBI_I1319	-	putative O-sialoglycoprotein endopeptidase
1283	 42.59	0	1376260..1377015	+	251	183220710	pssA	LEPBI_I1320	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1284	 34.63	-1	1377017..1377325	-	102	183220711	-	LEPBI_I1321	-	putative anti-sigma factor antagonist
1285	 39.92	0	1377411..1378367	+	318	183220712	-	LEPBI_I1322	-	beta-lactamase family hydrolase
1286	 41.82	0	1378369..1379865	+	498	183220713	glpK	LEPBI_I1323	-	glycerol kinase
1287	 38.76	0	1379876..1381054	-	392	183220714	-	LEPBI_I1324	-	putative flagellar motor switch protein
1288	 39.02	0	1381051..1381296	-	81	183220715	-	LEPBI_I1325	-	hypothetical protein
1289	 40.96	0	1381304..1382470	-	388	183220716	-	LEPBI_I1326	-	putative alcohol dehydrogenase
1290	 39.76	0	1382554..1382880	-	108	183220717	-	LEPBI_I1327	-	hypothetical protein
1291	 45.92	+1	1382901..1383623	-	240	183220718	-	LEPBI_I1328	-	putative methyltransferase
1292	 47.37	+2	1383613..1384353	-	246	183220719	-	LEPBI_I1329	-	hypothetical protein
1293	 45.83	+1	1384396..1385091	+	231	183220720	-	LEPBI_I1330	-	hypothetical protein
1294	 41.99	0	1385088..1387028	-	646	183220721	-	LEPBI_I1331	-	putative glutamine-dependent NAD(+) synthetase
1295	 39.98	0	1387015..1388292	-	425	183220722	-	LEPBI_I1332	-	putative 3-deoxy-D-manno-octulosonic-acid transferase
1296	 42.17	0	1388293..1389039	-	248	183220723	-	LEPBI_I1333	-	putative signal peptide
1297	 39.73	0	1389112..1389924	+	270	183220724	-	LEPBI_I1334	-	putative signal peptide
1298	 37.77	0	1389927..1390625	+	232	183220725	-	LEPBI_I1335	-	hypothetical protein
1299	 48.12	+2	1390654..1391397	+	247	183220726	proC	LEPBI_I1336	-	pyrroline-5-carboxylate reductase (P5CR; P5C reductase)
1300	 43.03	+1	1391644..1392705	+	353	183220727	-	LEPBI_I1337	-	hypothetical protein
1301	 39.91	0	1392728..1392955	+	75	183220728	-	LEPBI_I1338	-	hypothetical protein
1302	 45.07	+1	1392979..1393830	+	283	183220729	-	LEPBI_I1339	-	hypothetical protein
1303	 42.52	0	1393832..1394974	+	380	183220730	trmU	LEPBI_I1340	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1304	 44.74	+1	1394971..1397223	+	750	183220731	-	LEPBI_I1341	-	putative oxidase or carboxylase
1305	 42.00	0	1397220..1398488	+	422	183220732	-	LEPBI_I1342	-	hypothetical protein
1306	 38.73	0	1398489..1399451	+	320	183220733	-	LEPBI_I1343	-	putative ribosomal large subunit pseudouridine synthase
1307	 38.60	0	1399528..1400685	+	385	183220734	-	LEPBI_I1344	-	putative methyltransferase DNA modification enzyme
1308	 37.53	0	1400697..1401125	+	142	183220735	-	LEPBI_I1345	-	putative signal peptide
1309	 36.69	0	1401130..1401576	-	148	183220736	-	LEPBI_I1346	-	putative signal peptide
1310	 41.92	0	1401577..1402263	-	228	183220737	-	LEPBI_I1347	-	putative signal peptide
1311	 37.09	0	1402273..1403817	+	514	183220738	-	LEPBI_I1348	-	putative metalloendopeptidase
1312	 39.06	0	1403820..1405217	+	465	183220739	-	LEPBI_I1349	-	putative metallopeptidase; putative signal peptide
1313	 37.14	0	1405217..1406056	+	279	183220740	-	LEPBI_I1350	-	putative metallo-hydrolase/oxidoreductase
1314	 42.59	0	1406053..1406700	+	215	183220741	-	LEPBI_I1351	-	putative O-methyltransferase
1315	 39.14	0	1406728..1407519	+	263	183220742	-	LEPBI_I1352	-	putative signal peptide
1316	 39.77	0	1407550..1408917	+	455	183220743	-	LEPBI_I1353	-	hypothetical protein
1317	 37.45	0	1408928..1409704	+	258	183220744	-	LEPBI_I1354	-	hypothetical protein
1318	 43.70	+1	1409800..1410204	-	134	183220745	-	LEPBI_I1355	-	hypothetical protein
1319	 43.43	+1	1410367..1412862	+	831	183220746	-	LEPBI_I1356	-	hypothetical protein
1320	 41.62	0	1413107..1414615	+	502	183220747	-	LEPBI_I1357	-	ABC-type transport system, ATPase
1321	 40.40	0	1414651..1415244	+	197	183220748	ahpC2	LEPBI_I1358	-	Alkyl hydroperoxide reductase subunit C
1322	 43.08	+1	1415281..1416675	+	464	183220749	-	LEPBI_I1359	-	ABC transporter permease
1323	 41.59	0	1416693..1417007	-	104	183220750	-	LEPBI_I1360	-	putative signal peptide
1324	 41.65	0	1417018..1418316	+	432	183220751	-	LEPBI_I1361	-	putative glucose dehydrogenase; putative signal peptide
1325	 40.75	0	1418385..1420379	+	664	183220752	-	LEPBI_I1362	-	putative alkaline phosphatase; putative membrane protein
1326	 41.25	0	1420472..1421683	-	403	183220753	-	LEPBI_I1363	-	putative sterol desaturase-related protein; putative membrane protein
1327	 42.84	0	1421897..1422958	+	353	183220754	-	LEPBI_I1364	-	hypothetical protein
1328	 38.64	0	1422966..1423229	+	87	183220755	-	LEPBI_I1365	-	putative signal peptide
1329	 39.19	0	1423226..1424932	+	568	183220756	-	LEPBI_I1367	-	dolichyl-phosphate-mannose--protein mannosyltransferase family protein
1330	 46.39	+1	1425267..1425779	+	170	183220757	-	LEPBI_I1368	-	putative cytochrome c3; putative signal peptide
1331	 44.10	+1	1425801..1428929	+	1042	183220758	-	LEPBI_I1369	-	putative molybdopterin oxidoreductase, iron-sulfur binding subunit
1332	 45.63	+1	1428949..1430322	+	457	183220759	-	LEPBI_I1370	-	putative molybdopterin oxidoreductase; putative membrane protein
1333	 43.03	+1	1430324..1430890	+	188	183220760	-	LEPBI_I1371	-	hypothetical protein
1334	 44.39	+1	1430887..1431474	+	195	183220761	-	LEPBI_I1372	-	putative cytochrome c_like protein
1335	 43.80	+1	1431483..1432733	+	416	183220762	-	LEPBI_I1373	-	hypothetical protein
1336	 38.37	0	1432744..1433259	+	171	183220763	-	LEPBI_I1374	-	putative signal peptide
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.