IslandPathversion 1.0

IslandPath Analysis: Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.82 STD DEV: 4.08
Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome I, complete sequence - 1..3599677
3391 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1115	 42.41	0	1193476..1194147	-	223	183220542	-	LEPBI_I1145	-	putative alpha/beta hydrolase
1116	 37.91	0	1194464..1194922	+	152	183220543	-	LEPBI_I1147	-	MarR family transcriptional regulator
1117	 40.43	0	1194870..1195757	-	295	183220544	hemK	LEPBI_I1148	-	modification methylase HemK
1118	 40.16	0	1195839..1196483	-	214	183220545	-	LEPBI_I1149	-	putative cAMP-dependent protein kinase
1119	 41.19	0	1196480..1197535	-	351	183220546	-	LEPBI_I1150	-	putative cAMP binding protein
1120	 40.41	0	1197561..1198790	-	409	183220547	-	LEPBI_I1151	-	putative deaminase
1121	 38.69	0	1198787..1199440	-	217	183220548	-	LEPBI_I1152	-	hypothetical protein
1122	 45.12	+1	1199542..1201662	-	706	183220549	fusA	LEPBI_I1153	-	elongation factor G (EF-G)
1123	 41.85	0	1201789..1203315	+	508	183220550	-	LEPBI_I1154	-	putative cation transporter; putative membrane protein; putative signal peptide
1124	 35.85	0	1203361..1204395	+	344	183220551	-	LEPBI_I1155	-	hypothetical protein
1125	 38.78	0	1204392..1205291	+	299	183220552	-	LEPBI_I1156	-	putative prenyltransferase; putative membrane protein; putative signal peptide
1126	 41.33	0	1205294..1205806	+	170	183220553	-	LEPBI_I1157	-	putative thiol-disulfide isomerase and thioredoxin
1127	 36.69	0	1205825..1206598	+	257	183220554	-	LEPBI_I1158	-	hypothetical protein
1128	 33.90	-1	1206627..1207502	-	291	183220555	-	LEPBI_I1159	-	hypothetical protein
1129	 42.08	0	1207560..1208108	+	182	183220556	-	LEPBI_I1160	-	hypothetical protein
1130	 42.96	+1	1208318..1209034	+	238	183220557	-	LEPBI_I1161	-	putative signal peptide
1131	 41.64	0	1209101..1210015	+	304	183220558	cysK1	LEPBI_I1162	-	cysteine synthase A
1132	 35.57	0	1210111..1211988	+	625	183220559	topA	LEPBI_I1163	-	DNA topoisomerase I
1133	 39.30	0	1211978..1213066	+	362	183220560	hemH	LEPBI_I1164	-	ferrochelatase (Protoheme ferro-lyase; Heme synthetase)
1134	 36.72	0	1213037..1214248	-	403	183220561	hemG	LEPBI_I1165	-	protoporphyrinogen oxidase (PPO)
1135	 37.73	0	1214245..1215585	-	446	183220562	hemN	LEPBI_I1166	-	oxygen-independent coproporphyrinogen III oxidase (coproporphyrinogenase; coprogen oxidase)
1136	 38.31	0	1215582..1216625	-	347	183220563	hemE	LEPBI_I1167	-	uroporphyrinogen decarboxylase
1137	 42.41	0	1216629..1217906	-	425	183220564	hemL1	LEPBI_I1168	-	glutamate-1-semialdehyde aminotransferase
1138	 39.10	0	1217903..1218856	-	317	183220565	hemB	LEPBI_I1169	-	Delta-aminolevulinic acid dehydratase
1139	 37.50	0	1218853..1220388	-	511	183220566	hemC	LEPBI_I1170	-	porphobilinogen deaminase (PBG; hydroxymethylbilane synthase)
1140	 38.37	0	1220381..1221253	-	290	183220567	hemA	LEPBI_I1171	-	glutamyl-tRNA reductase (GluTR)
1141	 44.62	+1	1221363..1221743	+	126	183220568	msrB	LEPBI_I1172	-	peptide methionine sulfoxide reductase MsrB
1142	 35.77	0	1221784..1221906	-	40	183220569	-	LEPBI_I1173	-	hypothetical protein
1143	 43.14	+1	1222040..1222498	-	152	183220570	-	LEPBI_I1174	-	hypothetical protein
1144	 48.29	+2	1222668..1222901	-	77	183220571	-	LEPBI_I1175	-	hypothetical protein
1145	 35.32	0	1222934..1224493	-	519	183220572	-	LEPBI_I1176	-	hypothetical protein
1146	 37.84	0	1224516..1225136	+	206	183220573	-	LEPBI_I1177	-	hypothetical protein
1147	 41.58	0	1225141..1225734	-	197	183220574	sirA	LEPBI_I1178	-	siroheme synthase
1148	 47.11	+2	1225731..1226543	-	270	183220575	cobA1	LEPBI_I1179	-	uroporphyrin-III C/tetrapyrrole methyltransferase
1149	 38.72	0	1226690..1228453	+	587	183220576	cysJ	LEPBI_I1180	-	sulfite reductase [NADPH] flavoprotein alpha-component (SIR-FP)
1150	 39.87	0	1228461..1230128	+	555	183220577	cysI	LEPBI_I1181	-	sulfite reductase [NADPH] hemoprotein beta-component (SIR-HP; SIRHP)
1151	 41.93	0	1230329..1231561	-	410	183220578	cysN	LEPBI_I1182	-	ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase)
1152	 40.70	0	1231561..1232469	-	302	183220579	cysD	LEPBI_I1183	-	Sulfate adenylyltransferase subunit 2
1153	 44.63	+1	1232476..1233201	-	241	183220580	cysH	LEPBI_I1184	-	5'-adenylylsulfate reductase (APS reductase; cysH-like)
1154	 43.29	+1	1233270..1234334	-	354	183220581	cysA	LEPBI_I1185	-	ABC-type transport sulfate/thiosulfate system, ATP-binding protein
1155	 40.55	0	1234336..1235139	-	267	183220582	cysW	LEPBI_I1186	-	ABC-type transport sulfate protein, permease; putative signal peptide
1156	 41.16	0	1235136..1235966	-	276	183220583	cysT	LEPBI_I1187	-	ABC-type transport sulfate system, permease; putative signal peptide
1157	 39.21	0	1235967..1237004	-	345	183220584	sbp	LEPBI_I1188	-	ABC-type sulfate transport system, periplamic binding protein
1158	 36.36	0	1237184..1238836	+	550	183220585	-	LEPBI_I1189	-	putative flagellar protein
1159	 35.56	0	1238866..1239450	+	194	183220586	flgD	LEPBI_I1190	-	basal-body rod modification protein FlgD
1160	 43.15	+1	1239489..1240883	+	464	183220587	flgE	LEPBI_I1191	-	flagellar hook protein FlgE
1161	 36.27	0	1240980..1243325	+	781	183220588	-	LEPBI_I1192	-	hypothetical protein
1162	 36.23	0	1243322..1244323	+	333	183220589	-	LEPBI_I1193	-	hypothetical protein
1163	 36.07	0	1244375..1246348	+	657	183220590	-	LEPBI_I1194	-	hypothetical protein
1164	 41.22	0	1246420..1247256	+	278	183220591	-	LEPBI_I1195	-	putative enoyl-(Acyl-carrier-protein) reductase
1165	 39.51	0	1247260..1248651	-	463	183220592	murD	LEPBI_I1196	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
1166	 36.34	0	1248712..1249044	+	110	183220593	-	LEPBI_I1197	-	putative anti-sigma factor antagonist
1167	 38.22	0	1249054..1249830	+	258	183220594	trpC	LEPBI_I1198	-	indole-3-glycerol phosphate synthase (IGPS)
1168	 35.53	0	1249924..1251606	+	560	183220595	-	LEPBI_I1199	-	putative two-component sensor; putative membrane protein
1169	 34.81	0	1251629..1253863	-	744	183220596	-	LEPBI_I1200	-	putative signal transduction histidine kinase; putative membrane protein
1170	 40.16	0	1256153..1256533	+	126	183220597	-	LEPBI_I1203	-	hypothetical protein
1171	 36.25	0	1256625..1257242	-	205	183220598	-	LEPBI_I1204	-	hypothetical protein
1172	 33.00	-1	1257441..1258337	-	298	183220599	-	LEPBI_I1205	-	putative integrase/recombinase
1173	 36.46	0	1258410..1259687	-	425	183220600	-	LEPBI_I1206	-	ankyrin repeat-containing protein
1174	 37.85	0	1259689..1261215	-	508	183220601	-	LEPBI_I1207	-	parallel beta-helix repeat-containing electron transport protein
1175	 40.27	0	1261215..1262453	-	412	183220602	-	LEPBI_I1208	-	putative di-haem cytochrome c peroxidase
1176	 38.18	0	1262652..1263002	-	116	183220603	-	LEPBI_I1209	-	hypothetical protein
1177	 39.41	0	1263009..1263518	-	169	183220604	-	LEPBI_I1210	-	hypothetical protein
1178	 37.48	0	1263610..1264284	+	224	183220605	-	LEPBI_I1211	-	hypothetical protein
1179	 39.72	0	1264442..1264582	-	46	183220606	-	LEPBI_I1212	-	hypothetical protein
1180	 37.34	0	1264804..1265751	-	315	183220607	-	LEPBI_I1213	-	hypothetical protein
1181	 35.99	0	1266086..1266649	+	187	183220608	-	LEPBI_I1214	-	putative dihydrofolate reductase
1182	 38.31	0	1266752..1267837	-	361	183220609	-	LEPBI_I1215	-	hypothetical protein
1183	 35.58	0	1268344..1268610	+	88	183220610	-	LEPBI_I1216	-	putative transposase A
1184	 34.46	-1	1268793..1269413	+	206	183220611	-	LEPBI_I1217	-	putative transposase B, catalytic region
1185	 32.62	-1	1269429..1269992	-	187	183220612	-	LEPBI_I1218	-	putative two-component sensor histidine kinase
1186	 32.76	-1	1270080..1271126	-	348	183220613	-	LEPBI_I1219	-	putative sensory transduction histidine kinase
1187	 34.38	-1	1271822..1272013	+	63	183220614	-	LEPBI_I1220	-	hypothetical protein
1188	 40.51	0	1272340..1273482	+	380	183220615	-	LEPBI_I1221	-	hypothetical protein
1189	 35.08	0	1273489..1274805	-	438	183220616	-	LEPBI_I1222	-	putative transcriptional factor; putative membrane protein
1190	 36.14	0	1274787..1275071	-	94	183220617	-	LEPBI_I1223	-	hypothetical protein
1191	 35.94	0	1275178..1275369	-	63	183220618	-	LEPBI_I1224	-	hypothetical protein
1192	 38.24	0	1275526..1277052	-	508	183220619	-	LEPBI_I1225	-	HD-GYP domain-containing protein
1193	 28.57	-2	1277169..1277336	+	55	183220620	-	LEPBI_I1226	-	hypothetical protein
1194	 39.02	0	1277387..1278706	+	439	183220621	-	LEPBI_I1227	-	hypothetical protein
1195	 36.54	0	1278737..1279639	-	300	183220622	-	LEPBI_I1228	-	LysR family transcriptional regulator
1196	 42.02	0	1279731..1281134	+	467	183220623	leuC1	LEPBI_I1229	-	3-isopropylmalate dehydratase large subunit
1197	 40.35	0	1281131..1281757	+	208	183220624	leuD1	LEPBI_I1230	-	3-isopropylmalate dehydratase small subunit
1198	 39.08	0	1281800..1282687	-	295	183220625	-	LEPBI_I1231	-	hypothetical protein
1199	 35.07	0	1282807..1284360	-	517	183220626	-	LEPBI_I1232	-	putative methyl-accepting chemotaxis protein; putative membrane protein; putative signal peptide
1200	 39.24	0	1284518..1285939	-	473	183220627	-	LEPBI_I1233	-	ankyrin repeat-containing protein
1201	 35.68	0	1285947..1286372	-	141	183220628	-	LEPBI_I1235	-	hypothetical protein
1202	 35.55	0	1286570..1287562	+	330	183220629	-	LEPBI_I1236	-	alpha/beta family hydrolase
1203	 38.10	0	1287574..1287930	+	118	183220630	-	LEPBI_I1237	-	hypothetical protein
1204	 34.15	-1	1287957..1289183	+	408	183220631	-	LEPBI_I1238	-	hypothetical protein
1205	 38.83	0	1289592..1289882	+	96	183220632	-	LEPBI_I1239	-	hypothetical protein
1206	 34.41	-1	1289971..1290525	-	184	183220633	-	LEPBI_I1240	-	putative dihydrofolate reductase
1207	 41.87	0	1290819..1291181	-	120	183220634	-	LEPBI_I1241	-	ArsR family transcriptional regulator
1208	 36.78	0	1291303..1291854	+	183	183220635	-	LEPBI_I1242	-	hypothetical protein
1209	 39.00	0	1291961..1292401	-	146	183220636	-	LEPBI_I1243	-	hypothetical protein
1210	 34.80	0	1292636..1293181	-	181	183220637	-	LEPBI_I1244	-	hypothetical protein
1211	 36.06	0	1293187..1293699	-	170	183220638	-	LEPBI_I1245	-	hypothetical protein
1212	 43.23	+1	1293734..1293925	-	63	183220639	-	LEPBI_I1246	-	hypothetical protein
1213	 33.33	-1	1294046..1294372	-	108	183220640	-	LEPBI_I1247	-	hypothetical protein
1214	 45.19	+1	1294714..1295295	+	193	183220641	-	LEPBI_I1249	-	hypothetical protein
38.82	MEAN

4.08	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.