IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
904	 38.15	0	1028553..1029944	+	463	184153559	-	LAR_0904	-	hypothetical protein
905	 43.98	+1	1030054..1030908	+	284	184153560	-	LAR_0905	-	putative DNA-entry nuclease
906	 37.29	0	1031087..1033411	+	774	184153561	-	LAR_0906	-	hypothetical protein
907	 42.88	+1	1033495..1034877	-	460	184153562	-	LAR_0907	-	reverse transcriptase/maturase family protein
908	 37.31	0	1035990..1036190	+	66	184153563	-	LAR_0908	-	hypothetical protein
909	 32.39	-2	1036200..1036838	+	212	184153564	-	LAR_0909	-	hypothetical protein
910	 34.60	-1	1036911..1037777	+	288	184153565	-	LAR_0910	-	hypothetical protein
911	 35.82	-1	1038010..1038492	+	160	184153566	-	LAR_0911	-	hypothetical protein
912	 36.20	0	1038537..1039373	-	278	184153567	-	LAR_0912	-	hypothetical protein
913	 35.95	0	1042244..1042702	+	152	184153568	-	LAR_0913	-	transposase
914	 39.19	0	1042930..1043868	-	312	184153569	-	LAR_0914	-	putative lipase/esterase
915	 33.49	-1	1044093..1044740	+	215	184153570	-	LAR_0915	-	hypothetical protein
916	 35.59	-1	1044873..1045226	+	117	184153571	-	LAR_0916	-	hypothetical protein
917	 38.04	0	1046411..1047175	-	254	184153572	-	LAR_0917	-	enoyl-[acyl-carrier protein] reductase
918	 39.46	0	1047186..1047968	-	260	184153573	-	LAR_0918	-	acetyl-CoA carboxylase alpha subunit
919	 41.03	0	1047955..1048824	-	289	184153574	-	LAR_0919	-	acetyl-CoA carboxylase beta subunit
920	 41.50	0	1048800..1050170	-	456	184153575	-	LAR_0920	-	biotin/pyruvate carboxylase
921	 39.08	0	1050179..1050613	-	144	184153576	-	LAR_0921	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
922	 34.88	-1	1050606..1051058	-	150	184153577	-	LAR_0922	-	biotin carboxyl carrier protein
923	 42.98	+1	1051065..1052297	-	410	184153578	-	LAR_0923	-	3-oxoacyl-[acyl-carrier protein] synthase II
924	 40.95	0	1052308..1053042	-	244	184153579	-	LAR_0924	-	3-oxoacyl-[acyl-carrier protein] reductase
925	 40.06	0	1053026..1053976	-	316	184153580	-	LAR_0925	-	malonyl CoA-acyl carrier protein transacylase
926	 31.28	-2	1053976..1054218	-	80	184153581	-	LAR_0926	-	acyl carrier protein
927	 37.74	0	1054238..1055212	-	324	184153582	-	LAR_0927	-	3-oxoacyl-[acyl-carrier-protein] synthase III
928	 34.90	-1	1055232..1055678	-	148	184153583	-	LAR_0928	-	transcriptional regulator
929	 35.12	-1	1055765..1056211	-	148	184153584	-	LAR_0929	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
930	 37.87	0	1056536..1057615	+	359	184153585	-	LAR_0930	-	integrase
931	 38.13	0	1058670..1059524	-	284	184153586	-	LAR_0931	-	putative transposase
932	 39.93	0	1059732..1060625	+	297	184153587	-	LAR_0932	-	hypothetical protein
933	 34.94	-1	1060606..1061289	+	227	184153588	-	LAR_0933	-	putative integrase
934	 34.79	-1	1061398..1062288	+	296	184153589	-	LAR_0934	-	hypothetical protein
935	 40.66	0	1062472..1064082	+	536	184153590	-	LAR_0935	-	transposase
936	 36.96	0	1065608..1066297	-	229	184153591	-	LAR_0936	-	nitrate reductase gamma subunit
937	 36.96	0	1066290..1066868	-	192	184153592	-	LAR_0937	-	nitrate reductase delta subunit
938	 41.09	0	1066861..1068420	-	519	184153593	-	LAR_0938	-	nitrate reductase beta subunit
939	 40.40	0	1068410..1072075	-	1221	184153594	-	LAR_0939	-	nitrate reductase alpha subunit
940	 35.20	-1	1072221..1073240	+	339	184153595	-	LAR_0940	-	molybdopterin biosynthesis protein MoeB
941	 41.37	0	1073237..1073734	+	165	184153596	-	LAR_0941	-	molybdopterin biosynthesis protein MoaB
942	 40.31	0	1073724..1074941	+	405	184153597	-	LAR_0942	-	molybdopterin biosynthesis protein MoeA
943	 37.22	0	1074920..1075408	+	162	184153598	-	LAR_0943	-	molybdopterin-guanine dinucleotide biosynthesis protein MobB
944	 37.17	0	1075408..1075980	+	190	184153599	-	LAR_0944	-	molybdopterin-guanine dinucleotide biosynthesis protein MobA
945	 35.44	-1	1075970..1076254	+	94	184153600	-	LAR_0945	-	hypothetical protein
946	 36.84	0	1076405..1077460	+	351	184153601	-	LAR_0946	-	two component sensor histidine kinase
947	 35.32	-1	1077453..1078106	+	217	184153602	-	LAR_0947	-	two component response regulator
948	 38.10	0	1078202..1078474	+	90	184153603	-	LAR_0948	-	hypothetical protein
949	 34.57	-1	1078480..1079448	+	322	184153604	-	LAR_0949	-	hypothetical protein
950	 39.40	0	1079453..1080358	+	301	184153605	-	LAR_0950	-	hypothetical protein
951	 40.95	0	1080419..1081612	-	397	184153606	-	LAR_0951	-	nitrite extrusion protein
952	 39.84	0	1081659..1081904	-	81	184153607	-	LAR_0952	-	molybdenum cofactor biosynthesis protein D
953	 42.47	+1	1081904..1082308	-	134	184153608	-	LAR_0953	-	molybdenum cofactor biosynthesis protein E
954	 40.67	0	1083097..1083873	+	258	184153609	-	LAR_0954	-	iron(III) ABC transporter permease component
955	 38.74	0	1083870..1084646	+	258	184153610	-	LAR_0955	-	iron(III) ABC transporter ATP-binding component
956	 37.54	0	1084700..1085722	-	340	184153611	-	LAR_0956	-	iron(III) ABC transporter substrate binding component
957	 43.02	+1	1088145..1089527	-	460	184153612	-	LAR_0957	-	reverse transcriptase/maturase family protein
958	 40.46	0	1090122..1093811	-	1229	184153613	-	LAR_0958	-	hypothetical protein
959	 36.17	0	1095903..1096361	-	152	184153614	-	LAR_0959	-	transposase
960	 36.04	0	1096614..1097573	+	319	184153615	-	LAR_0960	-	hypothetical protein
961	 37.73	0	1097589..1098020	+	143	184153616	-	LAR_0961	-	hypothetical protein
962	 32.32	-2	1099079..1099573	+	164	184153617	-	LAR_0962	-	hypothetical protein
963	 32.80	-1	1099765..1099953	+	62	184153618	-	LAR_0963	-	hypothetical protein
964	 40.90	0	1099943..1100299	+	118	184153619	-	LAR_0964	-	transposase
965	 35.99	0	1100370..1101914	+	514	184153620	-	LAR_0965	-	hypothetical protein
966	 34.29	-1	1102061..1103950	-	629	184153621	-	LAR_0966	-	hypothetical protein
967	 38.89	0	1103951..1104256	-	101	184153622	-	LAR_0967	-	hypothetical protein
968	 42.35	0	1104536..1105345	+	269	184153623	-	LAR_0968	-	hydroxyethylthiazole kinase
969	 41.76	0	1105338..1106156	+	272	184153624	-	LAR_0969	-	phosphomethylpyrimidine kinase
970	 39.04	0	1106153..1106800	+	215	184153625	-	LAR_0970	-	thiamine-phosphate pyrophosphorylase
971	 40.79	0	1106876..1108135	-	419	184153626	-	LAR_0971	-	hypothetical protein
972	 38.32	0	1108293..1110599	-	768	184153627	-	LAR_0972	-	alpha-glucosidase
973	 37.04	0	1110711..1111385	+	224	184153628	-	LAR_0973	-	hypothetical protein
974	 35.45	-1	1111558..1111746	+	62	184153629	-	LAR_0974	-	hypothetical protein
975	 39.22	0	1111736..1112092	+	118	184153630	-	LAR_0975	-	transposase
976	 40.00	0	1112159..1113688	+	509	184153631	-	LAR_0976	-	hypothetical protein
977	 32.93	-1	1119382..1119876	-	164	184153632	-	LAR_0977	-	hypothetical protein
978	 30.75	-2	1119901..1120908	-	335	184153633	-	LAR_0978	-	hypothetical protein
979	 39.31	0	1121491..1122327	-	278	184153634	-	LAR_0979	-	putative phosphoglycerate mutase
980	 39.65	0	1122626..1123195	+	189	184153635	-	LAR_0980	-	glucosamine-6-phosphate isomerase
981	 36.07	0	1123192..1123776	-	194	184153636	-	LAR_0981	-	hypothetical protein
982	 38.89	0	1123754..1124167	-	137	184153637	-	LAR_0982	-	hypothetical protein
983	 39.44	0	1124277..1126535	-	752	184153638	-	LAR_0983	-	translation initiation factor IF-2
984	 39.51	0	1126723..1127418	+	231	184153639	-	LAR_0984	-	hypothetical protein
985	 41.23	0	1128058..1131159	-	1033	184153640	-	LAR_0985	-	exonuclease SbcC
986	 42.18	0	1131161..1132279	-	372	184153641	-	LAR_0986	-	exonuclease SbcD
987	 42.94	+1	1132432..1132608	-	58	184153642	-	LAR_0987	-	hypothetical protein
988	 39.51	0	1132627..1133403	-	258	184153643	-	LAR_0988	-	exopolysaccharide biosynthesis protein
989	 37.61	0	1137050..1138942	-	630	184153644	-	LAR_0989	-	hypothetical protein
990	 28.16	-2	1139252..1140043	-	263	184153645	-	LAR_0990	-	hypothetical protein
991	 27.72	-2	1140064..1140864	-	266	184153646	-	LAR_0991	-	hypothetical protein
992	 43.09	+1	1141394..1142797	-	467	184153647	-	LAR_0992	-	amino acid transport protein
993	 43.73	+1	1142790..1143722	-	310	184153648	-	LAR_0993	-	homocysteine S-methyltransferase
994	 42.00	0	1144884..1145852	+	322	184153649	-	LAR_0994	-	transposase
995	 27.23	-2	1145854..1146771	-	305	184153650	-	LAR_0995	-	hypothetical protein
996	 32.15	-2	1146860..1147618	-	252	184153651	-	LAR_0996	-	putative transposase
997	 33.91	-1	1147623..1148834	-	403	184153652	-	LAR_0997	-	transposase
998	 29.95	-2	1149011..1150102	-	363	184153653	-	LAR_0998	-	hypothetical protein
999	 29.00	-2	1150087..1151700	-	537	184153654	-	LAR_0999	-	hypothetical protein
1000	 24.17	-2	1152942..1154960	-	672	184153655	-	LAR_1000	-	hypothetical protein
1001	 26.33	-2	1156371..1158041	-	556	184153656	-	LAR_1001	-	hypothetical protein
1002	 42.91	+1	1158054..1158899	-	281	184153657	-	LAR_1002	-	dTDP-4-dehydrorhamnose reductase
1003	 43.92	+1	1159046..1159933	-	295	184153658	-	LAR_1003	-	dTDP-glucose 4,6-dehydratase
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.