IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
755	 40.92	0	869343..870278	+	311	184153410	-	LAR_0755	-	inorganic pyrophosphatase
756	 41.90	0	870311..871279	-	322	184153411	-	LAR_0756	-	transposase
757	 36.15	0	871488..871877	+	129	184153412	-	LAR_0757	-	hypothetical protein
758	 31.67	-2	872354..872533	+	59	184153413	-	LAR_0758	-	hypothetical protein
759	 37.78	0	872561..873055	+	164	184153414	-	LAR_0759	-	phosphinothricin N-acetyltransferase
760	 34.64	-1	873210..873593	-	127	184153415	-	LAR_0760	-	alkaline shock protein
761	 36.46	0	873611..873802	-	63	184153416	-	LAR_0761	-	hypothetical protein
762	 36.04	0	873817..874371	-	184	184153417	-	LAR_0762	-	hypothetical protein
763	 44.51	+1	874542..876071	-	509	184153418	-	LAR_0763	-	gluconate kinase
764	 42.49	+1	876122..877126	-	334	184153419	-	LAR_0764	-	transcriptional regulator
765	 41.60	0	877221..878357	-	378	184153420	-	LAR_0765	-	gluconate transport protein
766	 34.68	-1	878463..879728	-	421	184153421	-	LAR_0766	-	phage integrase
767	 32.28	-2	880196..881053	-	285	184153422	-	LAR_0767	-	hypothetical protein
768	 38.22	0	881074..881646	-	190	184153423	-	LAR_0768	-	hypothetical protein
769	 37.53	0	881609..882013	-	134	184153424	-	LAR_0769	-	hypothetical protein
770	 34.07	-1	882067..882471	-	134	184153425	-	LAR_0770	-	hypothetical protein
771	 37.90	0	882981..883199	+	72	184153426	-	LAR_0771	-	putative phage repressor
772	 38.50	0	883218..883991	+	257	184153427	-	LAR_0772	-	putative phage antirepressor
773	 43.63	+1	884267..884470	+	67	184153428	-	LAR_0773	-	hypothetical protein
774	 35.03	-1	884911..885087	+	58	184153429	-	LAR_0774	-	hypothetical protein
775	 40.97	0	885352..886281	+	309	184153430	-	LAR_0775	-	hypothetical protein
776	 41.81	0	886205..887089	+	294	184153431	-	LAR_0776	-	hypothetical protein
777	 37.85	0	887067..887951	+	294	184153432	-	LAR_0777	-	phage replication protein
778	 41.94	0	888717..888995	+	92	184153433	-	LAR_0778	-	hypothetical protein
779	 35.66	-1	889785..890171	+	128	184153434	-	LAR_0779	-	hypothetical protein
780	 39.15	0	890171..890359	+	62	184153435	-	LAR_0780	-	hypothetical protein
781	 41.74	0	890618..890938	+	106	184153436	-	LAR_0781	-	hypothetical protein
782	 41.34	0	892860..893558	+	232	184153437	-	LAR_0782	-	hypothetical protein
783	 46.01	+2	893558..893983	+	141	184153438	-	LAR_0783	-	hypothetical protein
784	 40.42	0	894015..894776	+	253	184153439	-	LAR_0784	-	hypothetical protein
785	 42.06	0	894793..895296	+	167	184153440	-	LAR_0785	-	hypothetical protein
786	 43.36	+1	895271..896566	+	431	184153441	-	LAR_0786	-	putative phage terminase
787	 41.82	0	896566..898227	+	553	184153442	-	LAR_0787	-	hypothetical protein
788	 42.06	0	898227..899177	+	316	184153443	-	LAR_0788	-	hypothetical protein
789	 39.09	0	899557..900216	+	219	184153444	-	LAR_0789	-	hypothetical protein
790	 40.85	0	900231..901307	+	358	184153445	-	LAR_0790	-	hypothetical protein
791	 38.25	0	901320..901685	+	121	184153446	-	LAR_0791	-	hypothetical protein
792	 45.37	+1	901676..901999	+	107	184153447	-	LAR_0792	-	hypothetical protein
793	 44.39	+1	901989..902549	+	186	184153448	-	LAR_0793	-	hypothetical protein
794	 41.82	0	902971..903618	+	215	184153449	-	LAR_0794	-	hypothetical protein
795	 41.03	0	903638..904183	+	181	184153450	-	LAR_0795	-	hypothetical protein
796	 46.67	+2	904276..904455	+	59	184153451	-	LAR_0796	-	hypothetical protein
797	 41.52	0	904459..908109	+	1216	184153452	-	LAR_0797	-	hypothetical protein
798	 38.51	0	908106..908993	+	295	184153453	-	LAR_0798	-	hypothetical protein
799	 39.67	0	908981..911221	+	746	184153454	-	LAR_0799	-	hypothetical protein
800	 41.15	0	911190..914786	+	1198	184153455	-	LAR_0800	-	hypothetical protein
801	 38.83	0	914779..915051	+	90	184153456	-	LAR_0801	-	hypothetical protein
802	 36.63	0	915094..915366	+	90	184153457	-	LAR_0802	-	hypothetical protein
803	 41.97	0	915379..916524	+	381	184153458	-	LAR_0803	-	hypothetical protein
804	 41.04	0	916521..917636	+	371	184153459	-	LAR_0804	-	hypothetical protein
805	 37.92	0	917639..918052	+	137	184153460	-	LAR_0805	-	hypothetical protein
806	 39.53	0	918036..918164	+	42	184153461	-	LAR_0806	-	hypothetical protein
807	 36.05	0	918203..918754	+	183	184153462	-	LAR_0807	-	hypothetical protein
808	 42.43	+1	918721..919962	+	413	184153463	-	LAR_0808	-	hypothetical protein
809	 42.54	+1	920410..921615	+	401	184153464	-	LAR_0809	-	pantothenate metabolism flavoprotein
810	 43.92	+1	921867..923396	-	509	184153465	-	LAR_0810	-	gluconate kinase
811	 39.14	0	923624..924157	+	177	184153466	-	LAR_0811	-	putative acetyltransferase
812	 35.50	-1	924665..924895	-	76	184153467	-	LAR_0812	-	hypothetical protein
813	 37.51	0	925644..927581	+	645	184153468	-	LAR_0813	-	putative amidase
814	 40.58	0	927663..927938	+	91	184153469	-	LAR_0814	-	hypothetical protein
815	 39.84	0	927999..928490	-	163	184153470	-	LAR_0815	-	hypothetical protein
816	 36.01	0	928800..930332	+	510	184153471	-	LAR_0816	-	type I restriction system DNA methylase
817	 32.72	-1	931508..932482	+	324	184153472	-	LAR_0817	-	integrase
818	 28.46	-2	932487..933614	+	375	184153473	-	LAR_0818	-	hypothetical protein
819	 35.00	-1	933668..936793	+	1041	184153474	-	LAR_0819	-	type I restriction-modification system restriction subnit
820	 30.42	-2	936850..937089	-	79	184153475	-	LAR_0820	-	hypothetical protein
821	 39.73	0	937445..939712	+	755	184153476	-	LAR_0821	-	hypothetical protein
822	 30.16	-2	939882..940007	+	41	184153477	-	LAR_0822	-	hypothetical protein
823	 43.17	+1	940164..941108	+	314	184153478	-	LAR_0823	-	putative inosine-uridine nucleoside N-ribohydrolase
824	 44.10	+1	941454..942512	+	352	184153479	-	LAR_0824	-	riboflavin biosynthesis protein
825	 40.80	0	942505..943107	+	200	184153480	-	LAR_0825	-	riboflavin synthase alpha subunit
826	 42.81	+1	943107..944288	+	393	184153481	-	LAR_0826	-	GTP cyclohydrolase II
827	 37.25	0	944291..944749	+	152	184153482	-	LAR_0827	-	riboflavin synthase beta subunit
828	 41.13	0	944795..945538	-	247	184153483	-	LAR_0828	-	hypothetical protein
829	 41.07	0	945593..948502	-	969	184153484	-	LAR_0829	-	hypothetical protein
830	 40.76	0	948650..949834	+	394	184153485	-	LAR_0830	-	hypothetical protein
831	 42.53	+1	949901..950476	-	191	184153486	-	LAR_0831	-	hypothetical protein
832	 41.33	0	950824..951198	-	124	184153487	-	LAR_0832	-	hypothetical protein
833	 45.13	+1	951232..952053	+	273	184153488	-	LAR_0833	-	dihydroxynapthoic acid synthase
834	 42.33	0	952069..953490	+	473	184153489	-	LAR_0834	-	O-succinylbenzoate-CoA ligase
835	 32.08	-2	953556..953714	-	52	184153490	-	LAR_0835	-	hypothetical protein
836	 41.06	0	953721..955712	-	663	184153491	-	LAR_0836	-	ferrous iron transport protein B
837	 42.07	0	956256..956942	+	228	184153492	-	LAR_0837	-	ABC transporter ATP-binding component
838	 43.46	+1	956951..958243	+	430	184153493	-	LAR_0838	-	hypothetical protein
839	 42.29	0	958224..959462	+	412	184153494	-	LAR_0839	-	cysteine desulfurase
840	 40.04	0	959449..959910	+	153	184153495	-	LAR_0840	-	nitrogen fixation protein
841	 41.06	0	959903..961312	+	469	184153496	-	LAR_0841	-	hypothetical protein
842	 39.94	0	961345..961677	+	110	184153497	-	LAR_0842	-	hypothetical protein
843	 36.70	0	961694..962584	+	296	184153498	-	LAR_0843	-	hypothetical protein
844	 35.02	-1	962757..963290	-	177	184153499	-	LAR_0844	-	hypothetical protein
845	 45.00	+1	963773..964012	+	79	184153500	-	LAR_0845	-	hypothetical protein
846	 39.98	0	964070..964882	-	270	184153501	-	LAR_0846	-	putative hydrolase
847	 42.91	+1	965027..966394	+	455	184153502	-	LAR_0847	-	putative rRNA methylase
848	 38.75	0	966413..967279	+	288	184153503	-	LAR_0848	-	hypothetical protein
849	 38.27	0	967280..969043	+	587	184153504	-	LAR_0849	-	two-component sensor histidine kinase
850	 35.66	-1	969024..969755	+	243	184153505	-	LAR_0850	-	two-component response regulator
851	 31.43	-2	969960..970379	+	139	184153506	-	LAR_0851	-	hypothetical protein
852	 40.62	0	970372..971112	+	246	184153507	-	LAR_0852	-	hypothetical protein
853	 39.59	0	971140..972114	+	324	184153508	-	LAR_0853	-	L-lactate dehydrogenase
854	 45.15	+1	972170..972643	-	157	184153509	-	LAR_0854	-	fructokinase
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.