IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
724	 40.60	0	836246..837139	+	297	184153379	-	LAR_0724	-	integrase/recombinase
725	 38.66	0	837153..837509	+	118	184153380	-	LAR_0725	-	hypothetical protein
726	 39.02	0	837502..838293	+	263	184153381	-	LAR_0726	-	hypothetical protein
727	 39.44	0	838256..838861	+	201	184153382	-	LAR_0727	-	hypothetical protein
728	 40.17	0	838861..839577	+	238	184153383	-	LAR_0728	-	putative pseudouridylate synthase
729	 40.77	0	840639..841673	+	344	184153384	-	LAR_0729	-	hypothetical protein
730	 38.06	0	841663..843102	+	479	184153385	-	LAR_0730	-	ATP-dependent DNA helicase RecQ
731	 37.70	0	843187..843759	+	190	184153386	-	LAR_0731	-	hypothetical protein
732	 39.30	0	843833..844519	+	228	184153387	-	LAR_0732	-	cytidylate kinase
733	 41.41	0	844592..845842	+	416	184153388	-	LAR_0733	-	30S ribosomal protein S1
734	 39.73	0	846072..847385	+	437	184153389	-	LAR_0734	-	GTP-binding protein
735	 43.84	+1	847595..847870	+	91	184153390	-	LAR_0735	-	DNA-binding protein HU
736	 37.05	0	848006..849271	+	421	184153391	-	LAR_0736	-	hypothetical protein
737	 39.03	0	849397..850608	+	403	184153392	-	LAR_0737	-	polyA polymerase
738	 39.35	0	850610..852520	+	636	184153393	-	LAR_0738	-	ABC transporter ATP-binding component
739	 40.19	0	852539..853501	+	320	184153394	-	LAR_0739	-	thymidylate synthase
740	 38.24	0	853517..854005	+	162	184153395	-	LAR_0740	-	dihydrofolate reductase
741	 40.31	0	853994..854638	-	214	184153396	-	LAR_0741	-	hemolysin III
742	 38.91	0	854817..855659	+	280	184153397	-	LAR_0742	-	hypothetical protein
743	 36.03	0	855752..856678	+	308	184153398	-	LAR_0743	-	hypothetical protein
744	 37.65	0	856681..857283	+	200	184153399	-	LAR_0744	-	hypothetical protein
745	 32.88	-1	857302..857523	+	73	184153400	-	LAR_0745	-	hypothetical protein
746	 40.78	0	857544..858416	+	290	184153401	-	LAR_0746	-	GTPase
747	 41.12	0	858409..859179	+	256	184153402	-	LAR_0747	-	ribonuclease HII
748	 43.72	+1	859230..860105	+	291	184153403	-	LAR_0748	-	DNA processing protein
749	 41.49	0	860227..862347	+	706	184153404	-	LAR_0749	-	DNA topoisomerase I
750	 37.32	0	862482..863360	+	292	184153405	-	LAR_0750	-	hypothetical protein
751	 39.05	0	863402..864031	-	209	184153406	-	LAR_0751	-	hypothetical protein
752	 41.69	0	864257..866266	+	669	184153407	-	LAR_0752	-	topoisomerase IV B subunit
753	 41.52	0	866285..868750	+	821	184153408	-	LAR_0753	-	topoisomerase IV A subunit
754	 39.10	0	868767..869234	+	155	184153409	-	LAR_0754	-	NTP pyrophosphohydrolase
755	 40.92	0	869343..870278	+	311	184153410	-	LAR_0755	-	inorganic pyrophosphatase
756	 41.90	0	870311..871279	-	322	184153411	-	LAR_0756	-	transposase
757	 36.15	0	871488..871877	+	129	184153412	-	LAR_0757	-	hypothetical protein
758	 31.67	-2	872354..872533	+	59	184153413	-	LAR_0758	-	hypothetical protein
759	 37.78	0	872561..873055	+	164	184153414	-	LAR_0759	-	phosphinothricin N-acetyltransferase
760	 34.64	-1	873210..873593	-	127	184153415	-	LAR_0760	-	alkaline shock protein
761	 36.46	0	873611..873802	-	63	184153416	-	LAR_0761	-	hypothetical protein
762	 36.04	0	873817..874371	-	184	184153417	-	LAR_0762	-	hypothetical protein
763	 44.51	+1	874542..876071	-	509	184153418	-	LAR_0763	-	gluconate kinase
764	 42.49	+1	876122..877126	-	334	184153419	-	LAR_0764	-	transcriptional regulator
765	 41.60	0	877221..878357	-	378	184153420	-	LAR_0765	-	gluconate transport protein
766	 34.68	-1	878463..879728	-	421	184153421	-	LAR_0766	-	phage integrase
767	 32.28	-2	880196..881053	-	285	184153422	-	LAR_0767	-	hypothetical protein
768	 38.22	0	881074..881646	-	190	184153423	-	LAR_0768	-	hypothetical protein
769	 37.53	0	881609..882013	-	134	184153424	-	LAR_0769	-	hypothetical protein
770	 34.07	-1	882067..882471	-	134	184153425	-	LAR_0770	-	hypothetical protein
771	 37.90	0	882981..883199	+	72	184153426	-	LAR_0771	-	putative phage repressor
772	 38.50	0	883218..883991	+	257	184153427	-	LAR_0772	-	putative phage antirepressor
773	 43.63	+1	884267..884470	+	67	184153428	-	LAR_0773	-	hypothetical protein
774	 35.03	-1	884911..885087	+	58	184153429	-	LAR_0774	-	hypothetical protein
775	 40.97	0	885352..886281	+	309	184153430	-	LAR_0775	-	hypothetical protein
776	 41.81	0	886205..887089	+	294	184153431	-	LAR_0776	-	hypothetical protein
777	 37.85	0	887067..887951	+	294	184153432	-	LAR_0777	-	phage replication protein
778	 41.94	0	888717..888995	+	92	184153433	-	LAR_0778	-	hypothetical protein
779	 35.66	-1	889785..890171	+	128	184153434	-	LAR_0779	-	hypothetical protein
780	 39.15	0	890171..890359	+	62	184153435	-	LAR_0780	-	hypothetical protein
781	 41.74	0	890618..890938	+	106	184153436	-	LAR_0781	-	hypothetical protein
782	 41.34	0	892860..893558	+	232	184153437	-	LAR_0782	-	hypothetical protein
783	 46.01	+2	893558..893983	+	141	184153438	-	LAR_0783	-	hypothetical protein
784	 40.42	0	894015..894776	+	253	184153439	-	LAR_0784	-	hypothetical protein
785	 42.06	0	894793..895296	+	167	184153440	-	LAR_0785	-	hypothetical protein
786	 43.36	+1	895271..896566	+	431	184153441	-	LAR_0786	-	putative phage terminase
787	 41.82	0	896566..898227	+	553	184153442	-	LAR_0787	-	hypothetical protein
788	 42.06	0	898227..899177	+	316	184153443	-	LAR_0788	-	hypothetical protein
789	 39.09	0	899557..900216	+	219	184153444	-	LAR_0789	-	hypothetical protein
790	 40.85	0	900231..901307	+	358	184153445	-	LAR_0790	-	hypothetical protein
791	 38.25	0	901320..901685	+	121	184153446	-	LAR_0791	-	hypothetical protein
792	 45.37	+1	901676..901999	+	107	184153447	-	LAR_0792	-	hypothetical protein
793	 44.39	+1	901989..902549	+	186	184153448	-	LAR_0793	-	hypothetical protein
794	 41.82	0	902971..903618	+	215	184153449	-	LAR_0794	-	hypothetical protein
795	 41.03	0	903638..904183	+	181	184153450	-	LAR_0795	-	hypothetical protein
796	 46.67	+2	904276..904455	+	59	184153451	-	LAR_0796	-	hypothetical protein
797	 41.52	0	904459..908109	+	1216	184153452	-	LAR_0797	-	hypothetical protein
798	 38.51	0	908106..908993	+	295	184153453	-	LAR_0798	-	hypothetical protein
799	 39.67	0	908981..911221	+	746	184153454	-	LAR_0799	-	hypothetical protein
800	 41.15	0	911190..914786	+	1198	184153455	-	LAR_0800	-	hypothetical protein
801	 38.83	0	914779..915051	+	90	184153456	-	LAR_0801	-	hypothetical protein
802	 36.63	0	915094..915366	+	90	184153457	-	LAR_0802	-	hypothetical protein
803	 41.97	0	915379..916524	+	381	184153458	-	LAR_0803	-	hypothetical protein
804	 41.04	0	916521..917636	+	371	184153459	-	LAR_0804	-	hypothetical protein
805	 37.92	0	917639..918052	+	137	184153460	-	LAR_0805	-	hypothetical protein
806	 39.53	0	918036..918164	+	42	184153461	-	LAR_0806	-	hypothetical protein
807	 36.05	0	918203..918754	+	183	184153462	-	LAR_0807	-	hypothetical protein
808	 42.43	+1	918721..919962	+	413	184153463	-	LAR_0808	-	hypothetical protein
809	 42.54	+1	920410..921615	+	401	184153464	-	LAR_0809	-	pantothenate metabolism flavoprotein
810	 43.92	+1	921867..923396	-	509	184153465	-	LAR_0810	-	gluconate kinase
811	 39.14	0	923624..924157	+	177	184153466	-	LAR_0811	-	putative acetyltransferase
812	 35.50	-1	924665..924895	-	76	184153467	-	LAR_0812	-	hypothetical protein
813	 37.51	0	925644..927581	+	645	184153468	-	LAR_0813	-	putative amidase
814	 40.58	0	927663..927938	+	91	184153469	-	LAR_0814	-	hypothetical protein
815	 39.84	0	927999..928490	-	163	184153470	-	LAR_0815	-	hypothetical protein
816	 36.01	0	928800..930332	+	510	184153471	-	LAR_0816	-	type I restriction system DNA methylase
817	 32.72	-1	931508..932482	+	324	184153472	-	LAR_0817	-	integrase
818	 28.46	-2	932487..933614	+	375	184153473	-	LAR_0818	-	hypothetical protein
819	 35.00	-1	933668..936793	+	1041	184153474	-	LAR_0819	-	type I restriction-modification system restriction subnit
820	 30.42	-2	936850..937089	-	79	184153475	-	LAR_0820	-	hypothetical protein
821	 39.73	0	937445..939712	+	755	184153476	-	LAR_0821	-	hypothetical protein
822	 30.16	-2	939882..940007	+	41	184153477	-	LAR_0822	-	hypothetical protein
823	 43.17	+1	940164..941108	+	314	184153478	-	LAR_0823	-	putative inosine-uridine nucleoside N-ribohydrolase
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.