IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
597	 41.86	0	696758..697942	+	394	184153252	-	LAR_0597	-	aspartate aminotransferase
598	 41.74	0	697962..699020	+	352	184153253	-	LAR_0598	-	aspartate-semialdehyde dehydrogenase
599	 30.17	-2	699078..699836	-	252	184153254	-	LAR_0599	-	hypothetical protein
600	 39.51	0	700327..701622	+	431	184153255	-	LAR_0600	-	putative gluconate transport protein
601	 42.27	0	701641..702792	+	383	184153256	-	LAR_0601	-	glycerate kinase
602	 35.42	-1	703148..703531	+	127	184153257	-	LAR_0602	-	hypothetical protein
603	 42.83	+1	703990..705390	+	466	184153258	-	LAR_0603	-	hypothetical protein
604	 39.96	0	705819..706769	-	316	184153259	-	LAR_0604	-	transcription regulator
605	 35.21	-1	706900..707112	-	70	184153260	-	LAR_0605	-	hypothetical protein
606	 32.30	-2	707239..707724	+	161	184153261	-	LAR_0606	-	hypothetical protein
607	 39.57	0	707777..708337	-	186	184153262	-	LAR_0607	-	N-formylmethionyl-tRNA deformylase
608	 40.86	0	708584..709699	+	371	184153263	-	LAR_0608	-	pyruvate dehydrogenase complex E1 component alpha subunit
609	 41.51	0	709702..710679	+	325	184153264	-	LAR_0609	-	pyruvate dehydrogenase complex E1 component beta subunit
610	 40.07	0	710711..712045	+	444	184153265	-	LAR_0610	-	pyruvate dehydrogenase complex E2 component
611	 40.83	0	712049..713476	+	475	184153266	-	LAR_0611	-	pyruvate dehydrogenase complex E3 component
612	 37.76	0	713633..713926	+	97	184153267	-	LAR_0612	-	hypothetical protein
613	 37.28	0	713907..714692	+	261	184153268	-	LAR_0613	-	myo-inositol-1(or 4)-monophosphatase
614	 41.08	0	714799..716643	+	614	184153269	-	LAR_0614	-	GTP-binding protein
615	 38.89	0	716737..717960	+	407	184153270	-	LAR_0615	-	cell division protein
616	 36.49	0	717953..718237	+	94	184153271	-	LAR_0616	-	hypothetical protein
617	 34.93	-1	718234..718797	+	187	184153272	-	LAR_0617	-	N6-adenine-specific methylase
618	 37.36	0	718797..719318	+	173	184153273	-	LAR_0618	-	pantetheine-phosphate adenylyltransferase
619	 39.51	0	719302..720354	+	350	184153274	-	LAR_0619	-	endopeptidase
620	 38.70	0	720448..721080	+	210	184153275	-	LAR_0620	-	DNA internalization-related competence protein ComEA
621	 37.04	0	721144..721629	+	161	184153276	-	LAR_0621	-	dCMP deaminase
622	 35.02	-1	721777..723906	+	709	184153277	-	LAR_0622	-	DNA internalization-related competence protein ComEC
623	 38.76	0	723876..724907	+	343	184153278	-	LAR_0623	-	DNA-directed DNA polymerase III delta subunit
624	 45.10	+1	725002..725256	-	84	184153279	-	LAR_0624	-	30S ribosomal protein S20
625	 39.26	0	725518..725787	+	89	184153280	-	LAR_0625	-	30S ribosomal protein S15
626	 36.98	0	725968..727749	+	593	184153281	-	LAR_0626	-	metallo-beta-lactamase superfamily protein
627	 35.96	0	727857..728771	+	304	184153282	-	LAR_0627	-	hypothetical protein
628	 43.41	+1	728950..730140	+	396	184153283	-	LAR_0628	-	elongation factor Tu
629	 38.83	0	730336..731646	+	436	184153284	-	LAR_0629	-	trigger factor
630	 38.85	0	731822..733072	+	416	184153285	-	LAR_0630	-	ATP-dependent Clp protease ATP-binding subunit ClpX
631	 37.39	0	733090..733680	+	196	184153286	-	LAR_0631	-	GTP-binding protein
632	 34.67	-1	733682..733981	+	99	184153287	-	LAR_0632	-	hypothetical protein
633	 26.09	-2	734025..734162	-	45	184153288	-	LAR_0633	-	hypothetical protein
634	 39.24	0	734306..736117	+	603	184153289	-	LAR_0634	-	excinuclease ABC subunit C
635	 41.23	0	736182..737498	+	438	184153290	-	LAR_0635	-	GTP-binding protein
636	 37.74	0	737531..738460	+	309	184153291	-	LAR_0636	-	metal-dependent hydrolase
637	 40.17	0	738478..739311	+	277	184153292	-	LAR_0637	-	oxidoreductase
638	 36.54	0	739451..739918	+	155	184153293	-	LAR_0638	-	single-strand DNA-specific exonuclease RecJ
639	 28.66	-2	739932..740252	+	106	184153294	-	LAR_0639	-	hypothetical protein
640	 36.26	0	740372..740644	+	90	184153295	-	LAR_0640	-	hypothetical protein
641	 32.18	-2	741188..742579	+	463	184153296	-	LAR_0641	-	phage DNA primase
642	 37.22	0	743009..743368	+	119	184153297	-	LAR_0642	-	hypothetical protein
643	 40.43	0	744665..745129	+	154	184153298	-	LAR_0643	-	hypothetical protein
644	 36.37	0	745129..746838	+	569	184153299	-	LAR_0644	-	phage large terminase subunit
645	 38.78	0	747003..748121	+	372	184153300	-	LAR_0645	-	phage portal protein
646	 39.78	0	748099..749619	+	506	184153301	-	LAR_0646	-	phage capsid protein
647	 38.71	0	750114..750392	+	92	184153302	-	LAR_0647	-	hypothetical protein
648	 38.27	0	751420..752088	+	222	184153303	-	LAR_0648	-	ribonuclease H
649	 38.43	0	752114..753271	+	385	184153304	-	LAR_0649	-	hydroxymethylglutaryl-CoA synthase
650	 36.84	0	753312..753938	-	208	184153305	-	LAR_0650	-	SOS-response transcriptional repressor
651	 34.52	-1	754067..754318	+	83	184153306	-	LAR_0651	-	hypothetical protein
652	 40.35	0	754392..754619	+	75	184153307	-	LAR_0652	-	hypothetical protein
653	 39.28	0	754663..755301	-	212	184153308	-	LAR_0653	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
654	 36.51	0	755396..756151	+	251	184153309	-	LAR_0654	-	hypothetical protein
655	 34.71	-1	756141..756431	+	96	184153310	-	LAR_0655	-	hypothetical protein
656	 36.86	0	756433..757425	+	330	184153311	-	LAR_0656	-	D-lactate dehydrogenase
657	 41.06	0	757588..758376	+	262	184153312	-	LAR_0657	-	30S ribosomal protein S2
658	 39.38	0	758475..759350	+	291	184153313	-	LAR_0658	-	translation elongation factor Ts
659	 39.97	0	759432..760154	+	240	184153314	-	LAR_0659	-	uridylate kinase
660	 36.35	0	760159..760722	+	187	184153315	-	LAR_0660	-	ribosome recycling factor
661	 42.63	+1	761218..762390	+	390	184153316	-	LAR_0661	-	reverse transcriptase/maturase family protein
662	 36.17	0	762850..763308	+	152	184153317	-	LAR_0662	-	transposase
663	 40.26	0	763610..764389	+	259	184153318	-	LAR_0663	-	undecaprenyl diphosphate synthase
664	 36.13	0	764409..765194	+	261	184153319	-	LAR_0664	-	phosphatidate cytidylyltransferase
665	 38.51	0	765217..766491	+	424	184153320	-	LAR_0665	-	hypothetical protein
666	 39.79	0	766520..768253	+	577	184153321	-	LAR_0666	-	prolyl-tRNA synthase
667	 41.09	0	768329..772660	+	1443	184153322	-	LAR_0667	-	DNA polymerase III alpha subunit
668	 37.76	0	772794..773267	+	157	184153323	-	LAR_0668	-	hypothetical protein
669	 40.91	0	773288..774475	+	395	184153324	-	LAR_0669	-	transcription termination-antitermination factor
670	 36.96	0	774504..774806	+	100	184153325	-	LAR_0670	-	hypothetical protein
671	 38.14	0	774793..775104	+	103	184153326	-	LAR_0671	-	putative ribosomal protein
672	 39.97	0	775118..777376	+	752	184153327	-	LAR_0672	-	translation initiation factor IF-2
673	 36.94	0	777396..777755	+	119	184153328	-	LAR_0673	-	ribosome-binding factor A
674	 37.75	0	777953..778858	+	301	184153329	-	LAR_0674	-	pseudouridylate synthase
675	 40.82	0	778871..779818	+	315	184153330	-	LAR_0675	-	riboflavin biosynthesis protein RibF
676	 37.63	0	779879..780250	-	123	184153331	-	LAR_0676	-	hypothetical protein
677	 39.32	0	780371..781423	+	350	184153332	-	LAR_0677	-	heat-inducible transcription repressor
678	 37.52	0	781436..782008	+	190	184153333	-	LAR_0678	-	heat shock protein GrpE
679	 40.03	0	782033..783898	+	621	184153334	-	LAR_0679	-	heat shock protein DnaK
680	 45.66	+2	784027..785178	+	383	184153335	-	LAR_0680	-	chaperone protein DnaJ
681	 41.23	0	785309..787144	+	611	184153336	-	LAR_0681	-	GTP-binding translation elongation factor LepA
682	 37.30	0	787295..788455	-	386	184153337	-	LAR_0682	-	phage integrase
683	 30.75	-2	788579..789313	-	244	184153338	-	LAR_0683	-	hypothetical protein
684	 36.22	0	789606..790055	-	149	184153339	-	LAR_0684	-	hypothetical protein
685	 30.28	-2	790154..790612	-	152	184153340	-	LAR_0685	-	hypothetical protein
686	 39.55	0	791657..793072	+	471	184153341	-	LAR_0686	-	dipeptidase
687	 41.23	0	793145..794221	+	358	184153342	-	LAR_0687	-	malate dehydrogenase
688	 42.50	+1	794455..795414	-	319	184153343	-	LAR_0688	-	L-lactate dehydrogenase
689	 36.58	0	795864..796202	+	112	184153344	-	LAR_0689	-	hypothetical protein
690	 41.67	0	796280..797239	+	319	184153345	-	LAR_0690	-	ribosomal protein L11 methyltransferase
691	 43.32	+1	797240..797980	+	246	184153346	-	LAR_0691	-	hypothetical protein
692	 40.44	0	798413..800650	+	745	184153347	-	LAR_0692	-	GTP pyrophosphokinase
693	 37.67	0	800661..801098	+	145	184153348	-	LAR_0693	-	hypothetical protein
694	 38.52	0	801256..802104	-	282	184153349	-	LAR_0694	-	hypothetical protein
695	 40.77	0	802486..804288	+	600	184153350	-	LAR_0695	-	aspartyl-tRNA synthase
696	 36.17	0	804517..804975	+	152	184153351	-	LAR_0696	-	transposase
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.