IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
488	 40.12	0	565352..566500	+	382	184153143	-	LAR_0488	-	cysteine desulfurase
489	 39.48	0	566522..567742	+	406	184153144	-	LAR_0489	-	thiamine biosynthesis protein ThiI
490	 41.73	0	568069..570723	+	884	184153145	-	LAR_0490	-	valyl-tRNA synthase
491	 38.20	0	571106..572524	+	472	184153146	-	LAR_0491	-	cytochrome D ubiquinol oxidase subunit I
492	 38.25	0	572525..573541	+	338	184153147	-	LAR_0492	-	cytochrome D ubiquinol oxidase subunit II
493	 39.17	0	573548..575278	+	576	184153148	-	LAR_0493	-	cytochrome D ABC transporter ATP-binding and permease components
494	 41.35	0	575271..577016	+	581	184153149	-	LAR_0494	-	cytochrome D ABC transporter ATP-binding and permease components
495	 39.42	0	577071..578285	+	404	184153150	-	LAR_0495	-	putative NADH dehydrogenase
496	 39.80	0	578388..579701	+	437	184153151	-	LAR_0496	-	folylpolyglutamate synthase
497	 38.55	0	579768..580400	+	210	184153152	-	LAR_0497	-	putative DNA repair protein
498	 40.72	0	580536..581537	+	333	184153153	-	LAR_0498	-	cell shape determining protein MreB
499	 38.11	0	581671..582528	+	285	184153154	-	LAR_0499	-	cell shape determining protein MreC
500	 32.03	-2	582535..583071	+	178	184153155	-	LAR_0500	-	cell shape determining protein MreD
501	 37.19	0	583540..584187	+	215	184153156	-	LAR_0501	-	glutamine ABC transporter permease component
502	 38.25	0	584202..584852	+	216	184153157	-	LAR_0502	-	glutamine ABC transporter ATP-binding component
503	 36.97	0	584870..585721	+	283	184153158	-	LAR_0503	-	glutamine ABC transporter substrate binding component
504	 35.90	-1	585925..587172	+	415	184153159	-	LAR_0504	-	hypothetical protein
505	 39.11	0	587177..588475	+	432	184153160	-	LAR_0505	-	zinc-dependent proteinase
506	 39.69	0	588574..589611	+	345	184153161	-	LAR_0506	-	hypothetical protein
507	 34.86	-1	589639..590226	+	195	184153162	-	LAR_0507	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
508	 42.79	+1	590352..591599	+	415	184153163	-	LAR_0508	-	competence-damage protein
509	 40.50	0	591689..592777	+	362	184153164	-	LAR_0509	-	recombinase RecA
510	 39.83	0	593001..594554	+	517	184153165	-	LAR_0510	-	hypothetical protein
511	 39.53	0	594716..597361	+	881	184153166	-	LAR_0511	-	DNA mismatch repair protein MutS
512	 41.95	0	597373..599379	+	668	184153167	-	LAR_0512	-	DNA mismatch repair protein HexB
513	 37.00	0	599392..599991	+	199	184153168	-	LAR_0513	-	holliday junction DNA helicase RuvA
514	 41.79	0	600006..601022	+	338	184153169	-	LAR_0514	-	holliday junction DNA helicase RuvB
515	 41.23	0	601035..602123	+	362	184153170	-	LAR_0515	-	tRNA-guanine transglycosylase
516	 41.29	0	602195..602659	+	154	184153171	-	LAR_0516	-	preprotein translocase
517	 41.46	0	602786..603745	+	319	184153172	-	LAR_0517	-	exopolyphosphatase-related protein
518	 40.68	0	603759..605132	+	457	184153173	-	LAR_0518	-	ATP-dependent RNA helicase
519	 40.63	0	605388..608045	+	885	184153174	-	LAR_0519	-	alanyl-tRNA synthase
520	 34.46	-1	608315..608581	+	88	184153175	-	LAR_0520	-	hypothetical protein
521	 41.22	0	608578..609021	+	147	184153176	-	LAR_0521	-	hypothetical protein
522	 33.33	-1	609031..609327	+	98	184153177	-	LAR_0522	-	hypothetical protein
523	 36.69	0	609426..609962	+	178	184153178	-	LAR_0523	-	hypothetical protein
524	 40.11	0	609964..612339	+	791	184153179	-	LAR_0524	-	DNA mismatch repair protein
525	 35.87	-1	612430..612744	+	104	184153180	-	LAR_0525	-	thioredoxin
526	 40.00	0	612799..613353	-	184	184153181	-	LAR_0526	-	hypothetical protein
527	 37.94	0	613508..614311	+	267	184153182	-	LAR_0527	-	glutamate racemase
528	 39.80	0	614313..614900	+	195	184153183	-	LAR_0528	-	xanthosine triphosphate pyrophosphatase
529	 41.04	0	614906..615424	+	172	184153184	-	LAR_0529	-	putative phosphoesterase
530	 37.16	0	615445..615888	+	147	184153185	-	LAR_0530	-	hypothetical protein
531	 36.44	0	615994..616830	-	278	184153186	-	LAR_0531	-	hypothetical protein
532	 36.64	0	616820..617695	-	291	184153187	-	LAR_0532	-	hypothetical protein
533	 38.55	0	617838..618278	+	146	184153188	-	LAR_0533	-	hypothetical protein
534	 35.95	0	618271..618729	+	152	184153189	-	LAR_0534	-	hypothetical protein
535	 40.42	0	618770..619870	-	366	184153190	-	LAR_0535	-	Xaa-Pro dipeptidase
536	 37.78	0	620031..621041	+	336	184153191	-	LAR_0536	-	catabolite control protein A
537	 37.00	0	621055..621900	+	281	184153192	-	LAR_0537	-	hypothetical protein
538	 42.17	0	621975..622721	+	248	184153193	-	LAR_0538	-	hypothetical protein
539	 38.96	0	622842..623819	+	325	184153194	-	LAR_0539	-	competence protein
540	 34.27	-1	623737..624807	+	356	184153195	-	LAR_0540	-	hypothetical protein
541	 35.58	-1	624807..625118	+	103	184153196	-	LAR_0541	-	hypothetical protein
542	 35.49	-1	626669..627502	+	277	184153197	-	LAR_0542	-	putative modification methylase
543	 39.26	0	627516..628712	+	398	184153198	-	LAR_0543	-	acetate kinase
544	 35.14	-1	628827..629435	+	202	184153199	-	LAR_0544	-	putative phosphoesterase
545	 37.36	0	629456..630001	+	181	184153200	-	LAR_0545	-	hypothetical protein
546	 37.22	0	630010..630780	+	256	184153201	-	LAR_0546	-	sugar phosphatase
547	 32.72	-1	630761..631417	+	218	184153202	-	LAR_0547	-	hypothetical protein
548	 37.19	0	631385..632032	-	215	184153203	-	LAR_0548	-	hypothetical protein
549	 35.98	0	639428..640675	-	415	184153204	-	LAR_0549	-	transposase
550	 32.72	-1	640917..641408	-	163	184153205	-	LAR_0550	-	hypothetical protein
551	 34.83	-1	641656..642057	+	133	184153206	-	LAR_0551	-	hypothetical protein
552	 32.29	-2	642183..642854	+	223	184153207	-	LAR_0552	-	competence negative regulator
553	 35.65	-1	642938..643972	+	344	184153208	-	LAR_0553	-	competence protein
554	 36.02	0	643974..645350	+	458	184153209	-	LAR_0554	-	dipeptidase
555	 34.90	-1	645422..646060	-	212	184153210	-	LAR_0555	-	hypothetical protein
556	 37.77	0	646225..646878	+	217	184153211	-	LAR_0556	-	hypothetical protein
557	 35.79	-1	646882..647694	+	270	184153212	-	LAR_0557	-	hypothetical protein
558	 38.19	0	647694..648599	+	301	184153213	-	LAR_0558	-	pseudouridylate synthase
559	 35.60	-1	655159..655731	-	190	184153214	-	LAR_0559	-	hypothetical protein
560	 39.78	0	655802..656158	-	118	184153215	-	LAR_0560	-	transposase
561	 34.92	-1	656148..656336	-	62	184153216	-	LAR_0561	-	hypothetical protein
562	 37.71	0	656757..657785	-	342	184153217	-	LAR_0562	-	hypothetical protein
563	 34.62	-1	657900..658757	+	285	184153218	-	LAR_0563	-	rRNA large subunit methyltransferase A
564	 34.31	-1	658929..659438	+	169	184153219	-	LAR_0564	-	rRNA methylase
565	 39.85	0	659460..661790	+	776	184153220	-	LAR_0565	-	cell division protein FtsK
566	 38.23	0	662742..663170	+	142	184153221	-	LAR_0566	-	hypothetical protein
567	 39.18	0	663186..664142	+	318	184153222	-	LAR_0567	-	hypothetical protein
568	 38.75	0	664521..666680	+	719	184153223	-	LAR_0568	-	cell division protein FtsI/penicillin-binding protein 2
569	 37.76	0	666705..667676	+	323	184153224	-	LAR_0569	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
570	 37.78	0	667689..669059	+	456	184153225	-	LAR_0570	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
571	 40.34	0	669061..670173	+	370	184153226	-	LAR_0571	-	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
572	 36.04	0	670201..671049	+	282	184153227	-	LAR_0572	-	cell division protein FtsQ
573	 39.23	0	671170..672543	+	457	184153228	-	LAR_0573	-	cell division protein FtsA
574	 40.14	0	672561..673808	+	415	184153229	-	LAR_0574	-	cell division protein FtsZ
575	 36.45	0	673878..674294	+	138	184153230	-	LAR_0575	-	hypothetical protein
576	 39.44	0	674596..675381	+	261	184153231	-	LAR_0576	-	hypothetical protein
577	 36.57	0	675403..676143	+	246	184153232	-	LAR_0577	-	cell division initiation protein
578	 40.24	0	676441..679236	+	931	184153233	-	LAR_0578	-	isoleucyl-tRNA synthase
579	 39.71	0	679349..679552	+	67	184153234	-	LAR_0579	-	cold shock protein
580	 39.13	0	679565..680116	+	183	184153235	-	LAR_0580	-	hypothetical protein
581	 38.52	0	680109..680378	+	89	184153236	-	LAR_0581	-	hypothetical protein
582	 39.08	0	680394..681089	+	231	184153237	-	LAR_0582	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
583	 39.05	0	681109..682263	+	384	184153238	-	LAR_0583	-	cysteine desulfurase
584	 31.86	-2	682265..682603	+	112	184153239	-	LAR_0584	-	hypothetical protein
585	 41.89	0	682711..683844	+	377	184153240	-	LAR_0585	-	tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
586	 38.05	0	683981..684637	+	218	184153241	-	LAR_0586	-	phosphoglycerate mutase
587	 35.79	-1	684641..685333	+	230	184153242	-	LAR_0587	-	hypothetical protein
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.