IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
426	 40.88	0	493130..493606	+	158	184153081	-	LAR_0426	-	hypothetical protein
427	 31.52	-2	493835..494164	+	109	184153082	-	LAR_0427	-	hypothetical protein
428	 36.91	0	494359..495783	+	474	184153083	-	LAR_0428	-	Na-H antiporter
429	 37.62	0	496429..496638	-	69	184153084	-	LAR_0429	-	hypothetical protein
430	 32.00	-2	501268..502242	-	324	184153085	-	LAR_0430	-	hypothetical protein
431	 39.70	0	502468..502938	-	156	184153086	-	LAR_0431	-	hypothetical protein
432	 37.38	0	503856..504572	-	238	184153087	-	LAR_0432	-	putative transposase
433	 38.89	0	504681..505274	-	197	184153088	-	LAR_0433	-	hypothetical protein
434	 36.76	0	505465..506484	+	339	184153089	-	LAR_0434	-	hypothetical protein
435	 39.90	0	506692..507924	+	410	184153090	-	LAR_0435	-	arginine deiminase
436	 35.06	-1	508035..508496	+	153	184153091	-	LAR_0436	-	putative arginine transcriptional repressor
437	 39.45	0	508517..509938	+	473	184153092	-	LAR_0437	-	arginine-ornithine antiporter
438	 38.52	0	509987..511393	+	468	184153093	-	LAR_0438	-	arginine-ornithine antiporter
439	 38.84	0	511776..512483	-	235	184153094	-	LAR_0439	-	putative cobyric acid synthase
440	 40.81	0	512483..513820	-	445	184153095	-	LAR_0440	-	UDP-N-acetylmuramyl tripeptide synthase
441	 36.81	0	514050..514625	+	191	184153096	-	LAR_0441	-	thymidine kinase
442	 41.37	0	514647..515729	+	360	184153097	-	LAR_0442	-	peptide chain release factor 1
443	 41.64	0	515722..516588	+	288	184153098	-	LAR_0443	-	putative protoporphyrinogen oxidase
444	 42.08	0	516594..517622	+	342	184153099	-	LAR_0444	-	putative translation factor
445	 41.91	0	517736..518971	+	411	184153100	-	LAR_0445	-	serine hydroxymethyltransferase
446	 41.51	0	519064..519699	+	211	184153101	-	LAR_0446	-	uracil phosphoribosyltransferase
447	 40.86	0	519830..521557	+	575	184153102	-	LAR_0447	-	phosphoenolpyruvate-protein phosphotransferase
448	 37.63	0	521659..522774	+	371	184153103	-	LAR_0448	-	hypothetical protein
449	 39.28	0	522771..523544	+	257	184153104	-	LAR_0449	-	hypothetical protein
450	 39.79	0	523659..524975	+	438	184153105	-	LAR_0450	-	uracil transport protein
451	 38.56	0	525290..525997	+	235	184153106	-	LAR_0451	-	ATP synthase A subunit
452	 44.75	+1	526022..526240	+	72	184153107	-	LAR_0452	-	ATP synthase C subunit
453	 39.69	0	526286..526804	+	172	184153108	-	LAR_0453	-	ATP synthase B subunit
454	 39.78	0	526794..527336	+	180	184153109	-	LAR_0454	-	ATP synthase delta subunit
455	 42.48	+1	527368..528897	+	509	184153110	-	LAR_0455	-	ATP synthase alpha subunit
456	 39.47	0	528933..529877	+	314	184153111	-	LAR_0456	-	ATP synthase gamma subunit
457	 41.67	0	529904..531331	+	475	184153112	-	LAR_0457	-	ATP synthase beta subunit
458	 42.13	0	531343..531774	+	143	184153113	-	LAR_0458	-	ATP synthase epsilon subunit
459	 41.69	0	532259..533575	+	438	184153114	-	LAR_0459	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
460	 39.48	0	533682..534674	+	330	184153115	-	LAR_0460	-	cell shape determining protein MreB
461	 35.11	-1	534940..535164	+	74	184153116	-	LAR_0461	-	hypothetical protein
462	 39.17	0	535207..536406	+	399	184153117	-	LAR_0462	-	cell division membrane protein
463	 38.10	0	536419..536712	+	97	184153118	-	LAR_0463	-	putative glycine cleavage system
464	 40.92	0	536868..538277	+	469	184153119	-	LAR_0464	-	hypothetical protein
465	 37.42	0	538404..539552	+	382	184153120	-	LAR_0465	-	D-alanine--D-alanine ligase
466	 34.04	-1	539987..540832	+	281	184153121	-	LAR_0466	-	hypothetical protein
467	 42.51	+1	541229..542644	+	471	184153122	-	LAR_0467	-	transport protein
468	 40.30	0	542657..544279	+	540	184153123	-	LAR_0468	-	sugar kinase
469	 42.66	+1	544283..545011	+	242	184153124	-	LAR_0469	-	L-ribulose 5-phosphate 4-epimerase
470	 40.72	0	545065..546486	+	473	184153125	-	LAR_0470	-	L-arabinose isomerase
471	 41.05	0	546572..547141	+	189	184153126	-	LAR_0471	-	maltose O-acetyltransferase
472	 40.33	0	547230..548072	-	280	184153127	-	LAR_0472	-	aldo/keto reductase
473	 37.16	0	548065..549162	-	365	184153128	-	LAR_0473	-	arabinose operon repressor
474	 40.29	0	549274..549762	-	162	184153129	-	LAR_0474	-	hypothetical protein
475	 44.98	+1	550448..551752	-	434	184153130	-	LAR_0475	-	hypothetical protein
476	 40.08	0	551756..552244	-	162	184153131	-	LAR_0476	-	hypothetical protein
477	 38.10	0	552379..552651	+	90	184153132	-	LAR_0477	-	hypothetical protein
478	 40.44	0	552709..553116	-	135	184153133	-	LAR_0478	-	hypothetical protein
479	 40.99	0	553141..553884	-	247	184153134	-	LAR_0479	-	hypothetical protein
480	 37.60	0	554137..554886	+	249	184153135	-	LAR_0480	-	hypothetical protein
481	 42.11	0	555002..556732	+	576	184153136	-	LAR_0481	-	hypothetical protein
482	 40.94	0	556725..557579	+	284	184153137	-	LAR_0482	-	hypothetical protein
483	 36.17	0	557722..558180	+	152	184153138	-	LAR_0483	-	transposase
484	 42.88	+1	559332..560714	+	460	184153139	-	LAR_0484	-	reverse transcriptase/maturase family protein
485	 39.06	0	560900..562297	+	465	184153140	-	LAR_0485	-	putative transport protein
486	 44.06	+1	562429..563034	-	201	184153141	-	LAR_0486	-	30S ribosomal protein S4
487	 36.31	0	563416..565128	+	570	184153142	-	LAR_0487	-	cell division regulatory protein
488	 40.12	0	565352..566500	+	382	184153143	-	LAR_0488	-	cysteine desulfurase
489	 39.48	0	566522..567742	+	406	184153144	-	LAR_0489	-	thiamine biosynthesis protein ThiI
490	 41.73	0	568069..570723	+	884	184153145	-	LAR_0490	-	valyl-tRNA synthase
491	 38.20	0	571106..572524	+	472	184153146	-	LAR_0491	-	cytochrome D ubiquinol oxidase subunit I
492	 38.25	0	572525..573541	+	338	184153147	-	LAR_0492	-	cytochrome D ubiquinol oxidase subunit II
493	 39.17	0	573548..575278	+	576	184153148	-	LAR_0493	-	cytochrome D ABC transporter ATP-binding and permease components
494	 41.35	0	575271..577016	+	581	184153149	-	LAR_0494	-	cytochrome D ABC transporter ATP-binding and permease components
495	 39.42	0	577071..578285	+	404	184153150	-	LAR_0495	-	putative NADH dehydrogenase
496	 39.80	0	578388..579701	+	437	184153151	-	LAR_0496	-	folylpolyglutamate synthase
497	 38.55	0	579768..580400	+	210	184153152	-	LAR_0497	-	putative DNA repair protein
498	 40.72	0	580536..581537	+	333	184153153	-	LAR_0498	-	cell shape determining protein MreB
499	 38.11	0	581671..582528	+	285	184153154	-	LAR_0499	-	cell shape determining protein MreC
500	 32.03	-2	582535..583071	+	178	184153155	-	LAR_0500	-	cell shape determining protein MreD
501	 37.19	0	583540..584187	+	215	184153156	-	LAR_0501	-	glutamine ABC transporter permease component
502	 38.25	0	584202..584852	+	216	184153157	-	LAR_0502	-	glutamine ABC transporter ATP-binding component
503	 36.97	0	584870..585721	+	283	184153158	-	LAR_0503	-	glutamine ABC transporter substrate binding component
504	 35.90	-1	585925..587172	+	415	184153159	-	LAR_0504	-	hypothetical protein
505	 39.11	0	587177..588475	+	432	184153160	-	LAR_0505	-	zinc-dependent proteinase
506	 39.69	0	588574..589611	+	345	184153161	-	LAR_0506	-	hypothetical protein
507	 34.86	-1	589639..590226	+	195	184153162	-	LAR_0507	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
508	 42.79	+1	590352..591599	+	415	184153163	-	LAR_0508	-	competence-damage protein
509	 40.50	0	591689..592777	+	362	184153164	-	LAR_0509	-	recombinase RecA
510	 39.83	0	593001..594554	+	517	184153165	-	LAR_0510	-	hypothetical protein
511	 39.53	0	594716..597361	+	881	184153166	-	LAR_0511	-	DNA mismatch repair protein MutS
512	 41.95	0	597373..599379	+	668	184153167	-	LAR_0512	-	DNA mismatch repair protein HexB
513	 37.00	0	599392..599991	+	199	184153168	-	LAR_0513	-	holliday junction DNA helicase RuvA
514	 41.79	0	600006..601022	+	338	184153169	-	LAR_0514	-	holliday junction DNA helicase RuvB
515	 41.23	0	601035..602123	+	362	184153170	-	LAR_0515	-	tRNA-guanine transglycosylase
516	 41.29	0	602195..602659	+	154	184153171	-	LAR_0516	-	preprotein translocase
517	 41.46	0	602786..603745	+	319	184153172	-	LAR_0517	-	exopolyphosphatase-related protein
518	 40.68	0	603759..605132	+	457	184153173	-	LAR_0518	-	ATP-dependent RNA helicase
519	 40.63	0	605388..608045	+	885	184153174	-	LAR_0519	-	alanyl-tRNA synthase
520	 34.46	-1	608315..608581	+	88	184153175	-	LAR_0520	-	hypothetical protein
521	 41.22	0	608578..609021	+	147	184153176	-	LAR_0521	-	hypothetical protein
522	 33.33	-1	609031..609327	+	98	184153177	-	LAR_0522	-	hypothetical protein
523	 36.69	0	609426..609962	+	178	184153178	-	LAR_0523	-	hypothetical protein
524	 40.11	0	609964..612339	+	791	184153179	-	LAR_0524	-	DNA mismatch repair protein
525	 35.87	-1	612430..612744	+	104	184153180	-	LAR_0525	-	thioredoxin
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.