IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
383	 39.87	0	447503..448252	+	249	184153038	-	LAR_0383	-	triosephosphate isomerase
384	 42.21	0	448292..449665	+	457	184153039	-	LAR_0384	-	enolase
385	 40.66	0	449836..451446	+	536	184153040	-	LAR_0385	-	transposase
386	 38.03	0	451666..453048	+	460	184153041	-	LAR_0386	-	hypothetical protein
387	 38.94	0	453166..454716	+	516	184153042	-	LAR_0387	-	chloride channel protein
388	 40.93	0	455102..455878	+	258	184153043	-	LAR_0388	-	carboxylesterase
389	 39.73	0	455865..458270	+	801	184153044	-	LAR_0389	-	ribonuclease R
390	 36.08	0	458288..458761	+	157	184153045	-	LAR_0390	-	SsrA-binding protein
391	 37.44	0	458818..459402	-	194	184153046	-	LAR_0391	-	hypothetical protein
392	 41.16	0	459553..460242	+	229	184153047	-	LAR_0392	-	uracil-DNA glycosylase
393	 41.64	0	460303..461277	+	324	184153048	-	LAR_0393	-	phosphate acetyltransferase
394	 41.18	0	461397..461855	+	152	184153049	-	LAR_0394	-	hypothetical protein
395	 37.45	0	461855..462364	+	169	184153050	-	LAR_0395	-	putative acetyltransferase
396	 37.59	0	462397..462819	-	140	184153051	-	LAR_0396	-	hypothetical protein
397	 39.63	0	462831..463370	-	179	184153052	-	LAR_0397	-	DNA polymerase III epsilon subunit
398	 40.80	0	463495..464391	+	298	184153053	-	LAR_0398	-	UDP-N-acetylmuramate dehydrogenase
399	 38.96	0	464724..465647	+	307	184153054	-	LAR_0399	-	ribokinase
400	 38.13	0	465659..466054	+	131	184153055	-	LAR_0400	-	ribose transport protein
401	 37.02	0	466073..467428	+	451	184153056	-	LAR_0401	-	fucose transport protein
402	 37.62	0	467576..468439	+	287	184153057	-	LAR_0402	-	hypothetical protein
403	 37.00	0	468423..469322	+	299	184153058	-	LAR_0403	-	hypothetical protein
404	 39.31	0	469350..470705	+	451	184153059	-	LAR_0404	-	phosphoglucosamine mutase
405	 39.26	0	470914..472734	+	606	184153060	-	LAR_0405	-	glutamine-fructose-6-phosphate transaminase
406	 34.29	-1	472995..473306	+	103	184153061	-	LAR_0406	-	hypothetical protein
407	 38.80	0	473368..475233	+	621	184153062	-	LAR_0407	-	putative acyltransferase
408	 35.96	0	475244..475699	+	151	184153063	-	LAR_0408	-	putative transcription regulator
409	 34.57	-1	475704..476510	+	268	184153064	-	LAR_0409	-	hydrolase
410	 41.83	0	476833..477444	+	203	184153065	-	LAR_0410	-	aggregation promoting factor
411	 36.94	0	478054..478773	+	239	184153066	-	LAR_0411	-	two-component system response regulator
412	 37.90	0	478773..480260	+	495	184153067	-	LAR_0412	-	two-component system histidine kinase
413	 39.95	0	480429..481289	+	286	184153068	-	LAR_0413	-	sugar transport protein
414	 40.33	0	481364..481978	-	204	184153069	-	LAR_0414	-	galactoside O-acetyltransferase
415	 40.40	0	482159..483517	+	452	184153070	-	LAR_0415	-	glucose-6-phosphate isomerase
416	 30.00	-2	484004..484303	-	99	184153071	-	LAR_0416	-	hypothetical protein
417	 35.29	-1	484793..485251	-	152	184153072	-	LAR_0417	-	transposase
418	 33.45	-1	485472..486311	-	279	184153073	-	LAR_0418	-	two-component response regulator
419	 40.08	0	486564..487571	+	335	184153074	-	LAR_0419	-	ornithine carbamoyltransferase
420	 40.73	0	487588..488520	+	310	184153075	-	LAR_0420	-	carbamate kinase
421	 37.16	0	488564..489478	-	304	184153076	-	LAR_0421	-	transport protein
422	 41.58	0	489562..490143	-	193	184153077	-	LAR_0422	-	hypothetical protein
423	 36.77	0	490410..490787	+	125	184153078	-	LAR_0423	-	hypothetical protein
424	 35.42	-1	490787..491074	+	95	184153079	-	LAR_0424	-	hypothetical protein
425	 39.63	0	491074..493011	+	645	184153080	-	LAR_0425	-	cation-transporting ATPase
426	 40.88	0	493130..493606	+	158	184153081	-	LAR_0426	-	hypothetical protein
427	 31.52	-2	493835..494164	+	109	184153082	-	LAR_0427	-	hypothetical protein
428	 36.91	0	494359..495783	+	474	184153083	-	LAR_0428	-	Na-H antiporter
429	 37.62	0	496429..496638	-	69	184153084	-	LAR_0429	-	hypothetical protein
430	 32.00	-2	501268..502242	-	324	184153085	-	LAR_0430	-	hypothetical protein
431	 39.70	0	502468..502938	-	156	184153086	-	LAR_0431	-	hypothetical protein
432	 37.38	0	503856..504572	-	238	184153087	-	LAR_0432	-	putative transposase
433	 38.89	0	504681..505274	-	197	184153088	-	LAR_0433	-	hypothetical protein
434	 36.76	0	505465..506484	+	339	184153089	-	LAR_0434	-	hypothetical protein
435	 39.90	0	506692..507924	+	410	184153090	-	LAR_0435	-	arginine deiminase
436	 35.06	-1	508035..508496	+	153	184153091	-	LAR_0436	-	putative arginine transcriptional repressor
437	 39.45	0	508517..509938	+	473	184153092	-	LAR_0437	-	arginine-ornithine antiporter
438	 38.52	0	509987..511393	+	468	184153093	-	LAR_0438	-	arginine-ornithine antiporter
439	 38.84	0	511776..512483	-	235	184153094	-	LAR_0439	-	putative cobyric acid synthase
440	 40.81	0	512483..513820	-	445	184153095	-	LAR_0440	-	UDP-N-acetylmuramyl tripeptide synthase
441	 36.81	0	514050..514625	+	191	184153096	-	LAR_0441	-	thymidine kinase
442	 41.37	0	514647..515729	+	360	184153097	-	LAR_0442	-	peptide chain release factor 1
443	 41.64	0	515722..516588	+	288	184153098	-	LAR_0443	-	putative protoporphyrinogen oxidase
444	 42.08	0	516594..517622	+	342	184153099	-	LAR_0444	-	putative translation factor
445	 41.91	0	517736..518971	+	411	184153100	-	LAR_0445	-	serine hydroxymethyltransferase
446	 41.51	0	519064..519699	+	211	184153101	-	LAR_0446	-	uracil phosphoribosyltransferase
447	 40.86	0	519830..521557	+	575	184153102	-	LAR_0447	-	phosphoenolpyruvate-protein phosphotransferase
448	 37.63	0	521659..522774	+	371	184153103	-	LAR_0448	-	hypothetical protein
449	 39.28	0	522771..523544	+	257	184153104	-	LAR_0449	-	hypothetical protein
450	 39.79	0	523659..524975	+	438	184153105	-	LAR_0450	-	uracil transport protein
451	 38.56	0	525290..525997	+	235	184153106	-	LAR_0451	-	ATP synthase A subunit
452	 44.75	+1	526022..526240	+	72	184153107	-	LAR_0452	-	ATP synthase C subunit
453	 39.69	0	526286..526804	+	172	184153108	-	LAR_0453	-	ATP synthase B subunit
454	 39.78	0	526794..527336	+	180	184153109	-	LAR_0454	-	ATP synthase delta subunit
455	 42.48	+1	527368..528897	+	509	184153110	-	LAR_0455	-	ATP synthase alpha subunit
456	 39.47	0	528933..529877	+	314	184153111	-	LAR_0456	-	ATP synthase gamma subunit
457	 41.67	0	529904..531331	+	475	184153112	-	LAR_0457	-	ATP synthase beta subunit
458	 42.13	0	531343..531774	+	143	184153113	-	LAR_0458	-	ATP synthase epsilon subunit
459	 41.69	0	532259..533575	+	438	184153114	-	LAR_0459	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
460	 39.48	0	533682..534674	+	330	184153115	-	LAR_0460	-	cell shape determining protein MreB
461	 35.11	-1	534940..535164	+	74	184153116	-	LAR_0461	-	hypothetical protein
462	 39.17	0	535207..536406	+	399	184153117	-	LAR_0462	-	cell division membrane protein
463	 38.10	0	536419..536712	+	97	184153118	-	LAR_0463	-	putative glycine cleavage system
464	 40.92	0	536868..538277	+	469	184153119	-	LAR_0464	-	hypothetical protein
465	 37.42	0	538404..539552	+	382	184153120	-	LAR_0465	-	D-alanine--D-alanine ligase
466	 34.04	-1	539987..540832	+	281	184153121	-	LAR_0466	-	hypothetical protein
467	 42.51	+1	541229..542644	+	471	184153122	-	LAR_0467	-	transport protein
468	 40.30	0	542657..544279	+	540	184153123	-	LAR_0468	-	sugar kinase
469	 42.66	+1	544283..545011	+	242	184153124	-	LAR_0469	-	L-ribulose 5-phosphate 4-epimerase
470	 40.72	0	545065..546486	+	473	184153125	-	LAR_0470	-	L-arabinose isomerase
471	 41.05	0	546572..547141	+	189	184153126	-	LAR_0471	-	maltose O-acetyltransferase
472	 40.33	0	547230..548072	-	280	184153127	-	LAR_0472	-	aldo/keto reductase
473	 37.16	0	548065..549162	-	365	184153128	-	LAR_0473	-	arabinose operon repressor
474	 40.29	0	549274..549762	-	162	184153129	-	LAR_0474	-	hypothetical protein
475	 44.98	+1	550448..551752	-	434	184153130	-	LAR_0475	-	hypothetical protein
476	 40.08	0	551756..552244	-	162	184153131	-	LAR_0476	-	hypothetical protein
477	 38.10	0	552379..552651	+	90	184153132	-	LAR_0477	-	hypothetical protein
478	 40.44	0	552709..553116	-	135	184153133	-	LAR_0478	-	hypothetical protein
479	 40.99	0	553141..553884	-	247	184153134	-	LAR_0479	-	hypothetical protein
480	 37.60	0	554137..554886	+	249	184153135	-	LAR_0480	-	hypothetical protein
481	 42.11	0	555002..556732	+	576	184153136	-	LAR_0481	-	hypothetical protein
482	 40.94	0	556725..557579	+	284	184153137	-	LAR_0482	-	hypothetical protein
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.