IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
340	 39.78	0	398197..400134	-	645	184152995	-	LAR_0340	-	ABC transporter ATP-binding component
341	 36.90	0	400375..401019	+	214	184152996	-	LAR_0341	-	hypothetical protein
342	 40.35	0	401254..401538	+	94	184152997	-	LAR_0342	-	chaperonin GroES
343	 41.50	0	401630..403258	+	542	184152998	-	LAR_0343	-	chaperonin GroEL
344	 33.33	-1	403352..403840	+	162	184152999	-	LAR_0344	-	putative DNA-binding protein
345	 40.66	0	403922..405532	+	536	184153000	-	LAR_0345	-	transport protein
346	 40.24	0	405617..407455	+	612	184153001	-	LAR_0346	-	transport protein
347	 32.95	-1	407482..407742	+	86	184153002	-	LAR_0347	-	hypothetical protein
348	 35.52	-1	407861..408271	+	136	184153003	-	LAR_0348	-	transcription regulator
349	 36.51	0	408271..409656	+	461	184153004	-	LAR_0349	-	transport protein
350	 39.81	0	409699..410331	-	210	184153005	-	LAR_0350	-	hypothetical protein
351	 39.86	0	410393..411724	+	443	184153006	-	LAR_0351	-	competence protein
352	 38.33	0	411705..412385	+	226	184153007	-	LAR_0352	-	competence protein
353	 38.62	0	412517..413065	+	182	184153008	-	LAR_0353	-	ribosomal subunit interface protein
354	 39.93	0	413277..415640	+	787	184153009	-	LAR_0354	-	preprotein translocase SecA subunit
355	 42.74	+1	415840..416838	+	332	184153010	-	LAR_0355	-	peptide chain release factor 2
356	 36.01	0	416868..417203	+	111	184153011	-	LAR_0356	-	putative stress-responsive transcription regulator
357	 36.13	0	417203..417559	+	118	184153012	-	LAR_0357	-	hypothetical protein
358	 42.26	0	417574..418536	+	320	184153013	-	LAR_0358	-	HPr-P(Ser) kinase/phosphatase
359	 39.49	0	418537..419364	+	275	184153014	-	LAR_0359	-	prolipoprotein diacylglyceryl transferase
360	 40.12	0	419390..420406	+	338	184153015	-	LAR_0360	-	glycerol-3-phosphate dehydrogenase (NAD(P)+)
361	 38.69	0	420471..421385	+	304	184153016	-	LAR_0361	-	UTP-glucose-1-phosphate uridylyltransferase
362	 40.14	0	421457..422191	-	244	184153017	-	LAR_0362	-	hypothetical protein
363	 41.53	0	422184..423671	-	495	184153018	-	LAR_0363	-	iron-sulfur cluster binding protein
364	 40.80	0	423672..424475	-	267	184153019	-	LAR_0364	-	oxidoreductase
365	 42.66	+1	424738..425670	+	310	184153020	-	LAR_0365	-	thioredoxin reductase
366	 39.74	0	425764..426933	+	389	184153021	-	LAR_0366	-	peptidase
367	 36.50	0	427192..428076	+	294	184153022	-	LAR_0367	-	amino acid ABC transporter substrate binding component
368	 40.43	0	428122..428628	+	168	184153023	-	LAR_0368	-	acyl-CoA hydrolase
369	 40.99	0	428718..430442	+	574	184153024	-	LAR_0369	-	phosphoglucomutase
370	 36.46	0	430609..431247	+	212	184153025	-	LAR_0370	-	putative hydrolase
371	 35.16	-1	431352..431624	+	90	184153026	-	LAR_0371	-	hypothetical protein
372	 42.26	0	431846..433861	+	671	184153027	-	LAR_0372	-	excinuclease ABC subunit B
373	 41.50	0	433877..436741	+	954	184153028	-	LAR_0373	-	excinuclease ABC subunit A
374	 39.41	0	437010..438341	+	443	184153029	-	LAR_0374	-	hypothetical protein
375	 37.57	0	438449..439321	+	290	184153030	-	LAR_0375	-	hypothetical protein
376	 39.61	0	439337..440323	+	328	184153031	-	LAR_0376	-	hypothetical protein
377	 39.49	0	440342..441283	+	313	184153032	-	LAR_0377	-	hypothetical protein
378	 45.45	+1	441798..441929	+	43	184153033	-	LAR_0378	-	hypothetical protein
379	 38.89	0	442180..442773	+	197	184153034	-	LAR_0379	-	endopeptidase Clp proteolytic subunit
380	 39.75	0	442840..444414	-	524	184153035	-	LAR_0380	-	transposase
381	 40.48	0	445084..446091	+	335	184153036	-	LAR_0381	-	glyceraldehyde 3-phosphate dehydrogenase
382	 39.64	0	446182..447387	+	401	184153037	-	LAR_0382	-	phosphoglycerate kinase
383	 39.87	0	447503..448252	+	249	184153038	-	LAR_0383	-	triosephosphate isomerase
384	 42.21	0	448292..449665	+	457	184153039	-	LAR_0384	-	enolase
385	 40.66	0	449836..451446	+	536	184153040	-	LAR_0385	-	transposase
386	 38.03	0	451666..453048	+	460	184153041	-	LAR_0386	-	hypothetical protein
387	 38.94	0	453166..454716	+	516	184153042	-	LAR_0387	-	chloride channel protein
388	 40.93	0	455102..455878	+	258	184153043	-	LAR_0388	-	carboxylesterase
389	 39.73	0	455865..458270	+	801	184153044	-	LAR_0389	-	ribonuclease R
390	 36.08	0	458288..458761	+	157	184153045	-	LAR_0390	-	SsrA-binding protein
391	 37.44	0	458818..459402	-	194	184153046	-	LAR_0391	-	hypothetical protein
392	 41.16	0	459553..460242	+	229	184153047	-	LAR_0392	-	uracil-DNA glycosylase
393	 41.64	0	460303..461277	+	324	184153048	-	LAR_0393	-	phosphate acetyltransferase
394	 41.18	0	461397..461855	+	152	184153049	-	LAR_0394	-	hypothetical protein
395	 37.45	0	461855..462364	+	169	184153050	-	LAR_0395	-	putative acetyltransferase
396	 37.59	0	462397..462819	-	140	184153051	-	LAR_0396	-	hypothetical protein
397	 39.63	0	462831..463370	-	179	184153052	-	LAR_0397	-	DNA polymerase III epsilon subunit
398	 40.80	0	463495..464391	+	298	184153053	-	LAR_0398	-	UDP-N-acetylmuramate dehydrogenase
399	 38.96	0	464724..465647	+	307	184153054	-	LAR_0399	-	ribokinase
400	 38.13	0	465659..466054	+	131	184153055	-	LAR_0400	-	ribose transport protein
401	 37.02	0	466073..467428	+	451	184153056	-	LAR_0401	-	fucose transport protein
402	 37.62	0	467576..468439	+	287	184153057	-	LAR_0402	-	hypothetical protein
403	 37.00	0	468423..469322	+	299	184153058	-	LAR_0403	-	hypothetical protein
404	 39.31	0	469350..470705	+	451	184153059	-	LAR_0404	-	phosphoglucosamine mutase
405	 39.26	0	470914..472734	+	606	184153060	-	LAR_0405	-	glutamine-fructose-6-phosphate transaminase
406	 34.29	-1	472995..473306	+	103	184153061	-	LAR_0406	-	hypothetical protein
407	 38.80	0	473368..475233	+	621	184153062	-	LAR_0407	-	putative acyltransferase
408	 35.96	0	475244..475699	+	151	184153063	-	LAR_0408	-	putative transcription regulator
409	 34.57	-1	475704..476510	+	268	184153064	-	LAR_0409	-	hydrolase
410	 41.83	0	476833..477444	+	203	184153065	-	LAR_0410	-	aggregation promoting factor
411	 36.94	0	478054..478773	+	239	184153066	-	LAR_0411	-	two-component system response regulator
412	 37.90	0	478773..480260	+	495	184153067	-	LAR_0412	-	two-component system histidine kinase
413	 39.95	0	480429..481289	+	286	184153068	-	LAR_0413	-	sugar transport protein
414	 40.33	0	481364..481978	-	204	184153069	-	LAR_0414	-	galactoside O-acetyltransferase
415	 40.40	0	482159..483517	+	452	184153070	-	LAR_0415	-	glucose-6-phosphate isomerase
416	 30.00	-2	484004..484303	-	99	184153071	-	LAR_0416	-	hypothetical protein
417	 35.29	-1	484793..485251	-	152	184153072	-	LAR_0417	-	transposase
418	 33.45	-1	485472..486311	-	279	184153073	-	LAR_0418	-	two-component response regulator
419	 40.08	0	486564..487571	+	335	184153074	-	LAR_0419	-	ornithine carbamoyltransferase
420	 40.73	0	487588..488520	+	310	184153075	-	LAR_0420	-	carbamate kinase
421	 37.16	0	488564..489478	-	304	184153076	-	LAR_0421	-	transport protein
422	 41.58	0	489562..490143	-	193	184153077	-	LAR_0422	-	hypothetical protein
423	 36.77	0	490410..490787	+	125	184153078	-	LAR_0423	-	hypothetical protein
424	 35.42	-1	490787..491074	+	95	184153079	-	LAR_0424	-	hypothetical protein
425	 39.63	0	491074..493011	+	645	184153080	-	LAR_0425	-	cation-transporting ATPase
426	 40.88	0	493130..493606	+	158	184153081	-	LAR_0426	-	hypothetical protein
427	 31.52	-2	493835..494164	+	109	184153082	-	LAR_0427	-	hypothetical protein
428	 36.91	0	494359..495783	+	474	184153083	-	LAR_0428	-	Na-H antiporter
429	 37.62	0	496429..496638	-	69	184153084	-	LAR_0429	-	hypothetical protein
430	 32.00	-2	501268..502242	-	324	184153085	-	LAR_0430	-	hypothetical protein
431	 39.70	0	502468..502938	-	156	184153086	-	LAR_0431	-	hypothetical protein
432	 37.38	0	503856..504572	-	238	184153087	-	LAR_0432	-	putative transposase
433	 38.89	0	504681..505274	-	197	184153088	-	LAR_0433	-	hypothetical protein
434	 36.76	0	505465..506484	+	339	184153089	-	LAR_0434	-	hypothetical protein
435	 39.90	0	506692..507924	+	410	184153090	-	LAR_0435	-	arginine deiminase
436	 35.06	-1	508035..508496	+	153	184153091	-	LAR_0436	-	putative arginine transcriptional repressor
437	 39.45	0	508517..509938	+	473	184153092	-	LAR_0437	-	arginine-ornithine antiporter
438	 38.52	0	509987..511393	+	468	184153093	-	LAR_0438	-	arginine-ornithine antiporter
439	 38.84	0	511776..512483	-	235	184153094	-	LAR_0439	-	putative cobyric acid synthase
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.