IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
236	 43.25	+1	280786..281622	-	278	184152891	-	LAR_0236	-	hypothetical protein
237	 38.80	0	282115..283029	+	304	184152892	-	LAR_0237	-	glutaminase
238	 36.17	0	283175..283633	-	152	184152893	-	LAR_0238	-	transposase
239	 42.73	+1	284289..285671	+	460	184152894	-	LAR_0239	-	reverse transcriptase/maturase family protein
240	 38.84	0	285755..287044	-	429	184152895	-	LAR_0240	-	D-alanyl transfer protein DltD
241	 37.92	0	287037..287276	-	79	184152896	-	LAR_0241	-	D-alanyl carrier protein
242	 37.93	0	287296..288513	-	405	184152897	-	LAR_0242	-	D-alanyl transfer protein
243	 40.14	0	288513..290039	-	508	184152898	-	LAR_0243	-	D-alanine-D-alanyl carrier protein ligase
244	 39.39	0	290532..290894	+	120	184152899	-	LAR_0244	-	holo-[acyl-carrier protein] synthase
245	 42.11	0	290894..292021	+	375	184152900	-	LAR_0245	-	alanine racemase
246	 40.27	0	292040..292414	+	124	184152901	-	LAR_0246	-	hypothetical protein
247	 41.25	0	292605..293981	+	458	184152902	-	LAR_0247	-	cytosine transport protein
248	 40.52	0	293972..295210	+	412	184152903	-	LAR_0248	-	cytosine deaminase
249	 39.02	0	295595..296386	+	263	184152904	-	LAR_0249	-	2-oxo-hepta-3-ene-1,7-dioate hydratase
250	 39.12	0	296495..297133	-	212	184152905	-	LAR_0250	-	hypothetical protein
251	 40.11	0	297339..297899	+	186	184152906	-	LAR_0251	-	aminoacyl-tRNA hydrolase
252	 41.79	0	297921..301457	+	1178	184152907	-	LAR_0252	-	transcription-repair coupling factor
253	 35.53	-1	301454..301726	+	90	184152908	-	LAR_0253	-	hypothetical protein
254	 42.22	0	302367..302861	+	164	184152909	-	LAR_0254	-	hypothetical protein
255	 42.54	+1	302824..304257	+	477	184152910	-	LAR_0255	-	cell cycle protein
256	 36.83	0	304250..304792	+	180	184152911	-	LAR_0256	-	hypoxanthine-guanine phosphoribosyltransferase
257	 43.95	+1	305091..307133	+	680	184152912	-	LAR_0257	-	cell division protein FtsH
258	 40.83	0	307224..308144	+	306	184152913	-	LAR_0258	-	heat shock protein
259	 43.41	+1	308252..309253	+	333	184152914	-	LAR_0259	-	transcription regulator
260	 42.57	+1	309274..310800	+	508	184152915	-	LAR_0260	-	lysyl-tRNA synthase
261	 34.92	-1	317554..317742	+	62	184152916	-	LAR_0261	-	hypothetical protein
262	 39.78	0	317732..318088	+	118	184152917	-	LAR_0262	-	transposase
263	 36.25	0	318159..319703	+	514	184152918	-	LAR_0263	-	putative transposase
264	 40.48	0	320744..321457	+	237	184152919	-	LAR_0264	-	hypothetical protein
265	 42.00	0	321670..323169	+	499	184152920	-	LAR_0265	-	di-/tripeptide transport protein
266	 39.59	0	323226..324056	+	276	184152921	-	LAR_0266	-	hypothetical protein
267	 37.36	0	324415..325059	+	214	184152922	-	LAR_0267	-	hypothetical protein
268	 37.47	0	325177..326577	+	466	184152923	-	LAR_0268	-	putative transport protein
269	 43.33	+1	326668..328317	+	549	184152924	-	LAR_0269	-	putative transport protein
270	 39.38	0	328350..329060	+	236	184152925	-	LAR_0270	-	aspartate racemase
271	 40.46	0	329226..329927	+	233	184152926	-	LAR_0271	-	transcription regulator
272	 39.33	0	329989..331455	+	488	184152927	-	LAR_0272	-	nicotinate phosphoribosyltransferase
273	 43.48	+1	331468..332295	+	275	184152928	-	LAR_0273	-	NAD synthase
274	 42.90	+1	332355..334538	+	727	184152929	-	LAR_0274	-	transcription accessory protein
275	 38.63	0	334531..334983	+	150	184152930	-	LAR_0275	-	hypothetical protein
276	 40.91	0	335286..337172	+	628	184152931	-	LAR_0276	-	beta-galactosidase large subunit
277	 43.96	+1	337156..338115	+	319	184152932	-	LAR_0277	-	beta-galactosidase small subunit
278	 40.11	0	338213..339982	-	589	184152933	-	LAR_0278	-	hypothetical protein
279	 38.28	0	340095..340862	+	255	184152934	-	LAR_0279	-	phosphoglycerate mutase
280	 41.98	0	340825..341703	+	292	184152935	-	LAR_0280	-	putative lipase/esterase
281	 40.07	0	341969..343111	+	380	184152936	-	LAR_0281	-	cystathionine beta-lyase
282	 39.74	0	343138..343839	+	233	184152937	-	LAR_0282	-	ABC transporter permease component
283	 36.53	0	343845..344594	+	249	184152938	-	LAR_0283	-	ABC transporter ATP-binding component
284	 39.14	0	344610..345401	+	263	184152939	-	LAR_0284	-	ABC transporter substrate binding component
285	 40.64	0	345509..346849	-	446	184152940	-	LAR_0285	-	aminopeptidase C
286	 40.94	0	346878..347561	-	227	184152941	-	LAR_0286	-	ribose 5-phosphate epimerase
287	 41.08	0	347573..347869	-	98	184152942	-	LAR_0287	-	hypothetical protein
288	 39.85	0	348008..348544	+	178	184152943	-	LAR_0288	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
289	 41.92	0	348569..349942	+	457	184152944	-	LAR_0289	-	DNA repair protein RadA
290	 38.19	0	349961..351112	+	383	184152945	-	LAR_0290	-	hypothetical protein
291	 39.28	0	351487..352899	+	470	184152946	-	LAR_0291	-	cysteinyl-tRNA synthase
292	 42.27	0	352911..353324	+	137	184152947	-	LAR_0292	-	hypothetical protein
293	 42.13	0	353314..354063	+	249	184152948	-	LAR_0293	-	tRNA/rRNA methyltransferase
294	 39.33	0	354129..354278	+	49	184152949	-	LAR_0294	-	50S ribosomal protein L33
295	 33.33	-1	354290..354466	+	58	184152950	-	LAR_0295	-	preprotein translocase subunit SecE
296	 42.73	+1	354585..355127	+	180	184152951	-	LAR_0296	-	transcription antitermination protein NusG
297	 46.24	+2	355267..355692	+	141	184152952	-	LAR_0297	-	50S ribosomal protein L11
298	 41.99	0	355784..356476	+	230	184152953	-	LAR_0298	-	50S ribosomal protein L1
299	 40.07	0	356645..357847	+	400	184152954	-	LAR_0299	-	aminotransferase
300	 37.01	0	358323..359627	+	434	184152955	-	LAR_0300	-	glycosyltransferase
301	 38.95	0	359640..360761	+	373	184152956	-	LAR_0301	-	UDP-N-acetylglucosamine 2-epimerase
302	 43.51	+1	360959..361459	+	166	184152957	-	LAR_0302	-	50S ribosomal protein L10
303	 45.08	+1	361522..361887	+	121	184152958	-	LAR_0303	-	50S ribosomal protein L7/L12
304	 35.79	-1	362075..362359	-	94	184152959	-	LAR_0304	-	hypothetical protein
305	 34.36	-1	362492..362782	-	96	184152960	-	LAR_0305	-	hypothetical protein
306	 34.14	-1	362856..363227	-	123	184152961	-	LAR_0306	-	large-conductance mechanosensitive channel
307	 36.04	0	363417..363749	+	110	184152962	-	LAR_0307	-	putative transcription regulator
308	 38.24	0	363742..364353	+	203	184152963	-	LAR_0308	-	hypothetical protein
309	 36.38	0	364354..365109	+	251	184152964	-	LAR_0309	-	hypothetical protein
310	 41.68	0	365197..367833	-	878	184152965	-	LAR_0310	-	aldehyde-alcohol dehydrogenase
311	 36.96	0	368191..369210	-	339	184152966	-	LAR_0311	-	ribonucleotide diphosphate reductase beta subunit
312	 38.21	0	369325..371496	-	723	184152967	-	LAR_0312	-	ribonucleoside-diphosphate reductase alpha subunit
313	 36.84	0	371596..371823	-	75	184152968	-	LAR_0313	-	putative glutaredoxin
314	 38.79	0	372075..372587	+	170	184152969	-	LAR_0314	-	cytosine/adenosine deaminase
315	 39.98	0	372860..374695	+	611	184152970	-	LAR_0315	-	DNA polymerase III gamma and tau subunits
316	 37.07	0	374704..375024	+	106	184152971	-	LAR_0316	-	hypothetical protein
317	 41.63	0	375028..375630	+	200	184152972	-	LAR_0317	-	recombination protein RecR
318	 39.36	0	375635..375883	+	82	184152973	-	LAR_0318	-	hypothetical protein
319	 40.03	0	375893..376534	+	213	184152974	-	LAR_0319	-	thymidylate kinase
320	 35.80	-1	376554..376877	+	107	184152975	-	LAR_0320	-	hypothetical protein
321	 38.07	0	376892..377905	+	337	184152976	-	LAR_0321	-	DNA polymerase III delta subunit
322	 35.33	-1	377916..378266	+	116	184152977	-	LAR_0322	-	hypothetical protein
323	 41.75	0	378275..379141	+	288	184152978	-	LAR_0323	-	hypothetical protein
324	 37.27	0	379151..379912	+	253	184152979	-	LAR_0324	-	hypothetical protein
325	 36.90	0	380077..381591	+	504	184152980	-	LAR_0325	-	exopolyphosphatase
326	 40.82	0	381581..383836	+	751	184152981	-	LAR_0326	-	polyphosphate kinase
327	 41.05	0	383840..384811	+	323	184152982	-	LAR_0327	-	exopolyphosphatase
328	 41.06	0	384923..385918	+	331	184152983	-	LAR_0328	-	UDP-glucose 4-epimerase
329	 38.77	0	385956..387113	+	385	184152984	-	LAR_0329	-	putative transposase
330	 39.94	0	387551..388276	+	241	184152985	-	LAR_0330	-	glycoprotein endopeptidase
331	 39.28	0	388260..388814	+	184	184152986	-	LAR_0331	-	ribosomal-protein-alanine N-acetyltransferase
332	 42.73	+1	388833..389864	+	343	184152987	-	LAR_0332	-	O-sialoglycoprotein endopeptidase
333	 42.76	+1	389981..390754	-	257	184152988	-	LAR_0333	-	pyrroline-5-carboxylate reductase
334	 42.33	0	390772..392016	-	414	184152989	-	LAR_0334	-	gamma-glutamyl phosphate reductase
335	 40.81	0	392028..392816	-	262	184152990	-	LAR_0335	-	glutamate 5-kinase
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.