IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
153	 31.71	-2	194164..194409	+	81	184152808	-	LAR_0153	-	transcription regulator
154	 40.89	0	194828..196150	+	440	184152809	-	LAR_0154	-	putative transport protein
155	 40.89	0	196309..197049	-	246	184152810	-	LAR_0155	-	hypothetical protein
156	 37.72	0	197157..197384	+	75	184152811	-	LAR_0156	-	hypothetical protein
157	 38.10	0	197463..198113	+	216	184152812	-	LAR_0157	-	hypothetical protein
158	 39.74	0	198179..198412	-	77	184152813	-	LAR_0158	-	hypothetical protein
159	 42.21	0	198555..199973	-	472	184152814	-	LAR_0159	-	Na-H antiporter
160	 40.88	0	201951..202493	-	180	184152815	-	LAR_0160	-	hypothetical protein
161	 33.83	-1	202505..202906	-	133	184152816	-	LAR_0161	-	hypothetical protein
162	 40.86	0	203038..203808	+	256	184152817	-	LAR_0162	-	triosephosphate isomerase
163	 41.61	0	204086..205039	+	317	184152818	-	LAR_0163	-	oxidoreductase
164	 39.12	0	205039..205539	+	166	184152819	-	LAR_0164	-	hypothetical protein
165	 40.18	0	205560..208409	+	949	184152820	-	LAR_0165	-	putative helicase
166	 34.38	-1	208471..208758	+	95	184152821	-	LAR_0166	-	hypothetical protein
167	 41.08	0	208885..210240	-	451	184152822	-	LAR_0167	-	pyridine nucleotide-disulfide oxidoreductase
168	 37.07	0	210527..210847	+	106	184152823	-	LAR_0168	-	hypothetical protein
169	 40.71	0	210956..211660	+	234	184152824	-	LAR_0169	-	hypothetical protein
170	 39.05	0	211736..212470	+	244	184152825	-	LAR_0170	-	hypothetical protein
171	 42.68	+1	212654..214462	-	602	184152826	-	LAR_0171	-	cadmium-translocating P-type ATPase
172	 40.66	0	214566..215753	+	395	184152827	-	LAR_0172	-	phosphopentomutase
173	 41.05	0	215972..216826	-	284	184152828	-	LAR_0173	-	hypothetical protein
174	 42.59	+1	216829..217152	-	107	184152829	-	LAR_0174	-	hypothetical protein
175	 36.56	0	217432..218331	+	299	184152830	-	LAR_0175	-	glycine betaine/choline ABC transporter substrate bindingcomponent
176	 37.79	0	218413..219063	+	216	184152831	-	LAR_0176	-	glycine betaine/choline ABC transporter permease component
177	 39.69	0	219038..219808	+	256	184152832	-	LAR_0177	-	glycine betaine/choline ABC transporter ATP-binding component
178	 39.91	0	219801..220439	+	212	184152833	-	LAR_0178	-	glycine betaine/choline ABC transporter permease component
179	 38.69	0	220511..220939	+	142	184152834	-	LAR_0179	-	peptide methionine sulfoxide reductase
180	 37.92	0	221003..222355	-	450	184152835	-	LAR_0180	-	hypothetical protein
181	 39.53	0	222687..223832	-	381	184152836	-	LAR_0181	-	peptidase
182	 41.95	0	223851..224558	-	235	184152837	-	LAR_0182	-	ABC transporter permease component
183	 39.62	0	224533..225597	-	354	184152838	-	LAR_0183	-	ABC transporter ATP-binding component
184	 37.79	0	225610..226461	-	283	184152839	-	LAR_0184	-	hypothetical protein
185	 42.23	0	226982..227914	+	310	184152840	-	LAR_0185	-	L-2-hydroxyisocaproate dehydrogenase
186	 37.34	0	228061..229257	+	398	184152841	-	LAR_0186	-	multidrug transport protein
187	 41.74	0	229644..230285	-	213	184152842	-	LAR_0187	-	endonuclease III
188	 40.70	0	230577..232055	+	492	184152843	-	LAR_0188	-	amino acid transport protein
189	 41.79	0	232009..233379	+	456	184152844	-	LAR_0189	-	4-aminobutyrate aminotransferase
190	 40.94	0	233662..234831	+	389	184152845	-	LAR_0190	-	Na-H antiporter
191	 38.54	0	234841..237162	+	773	184152846	-	LAR_0191	-	DNA helicase
192	 37.61	0	237250..237693	+	147	184152847	-	LAR_0192	-	nucleoside-diphosphate kinase
193	 41.56	0	237745..238704	-	319	184152848	-	LAR_0193	-	hypothetical protein
194	 40.37	0	238982..240004	+	340	184152849	-	LAR_0194	-	tryptophanyl-tRNA synthase
195	 44.30	+1	240151..241089	+	312	184152850	-	LAR_0195	-	exopolyphosphatase
196	 44.26	+1	241082..242344	+	420	184152851	-	LAR_0196	-	hydroxymethylglutaryl-CoA reductase
197	 40.52	0	242337..243296	+	319	184152852	-	LAR_0197	-	hypothetical protein
198	 39.20	0	243302..244000	+	232	184152853	-	LAR_0198	-	transcription regulator
199	 34.13	-1	244055..244180	-	41	184152854	-	LAR_0199	-	hypothetical protein
200	 40.99	0	244449..245297	+	282	184152855	-	LAR_0200	-	hypothetical protein
201	 39.50	0	245375..247402	+	675	184152856	-	LAR_0201	-	methionyl-tRNA synthase
202	 41.60	0	247428..248213	+	261	184152857	-	LAR_0202	-	DNase
203	 40.04	0	248210..248776	+	188	184152858	-	LAR_0203	-	hypothetical protein
204	 40.04	0	248769..249662	+	297	184152859	-	LAR_0204	-	dimethyladenosine transferase
205	 36.63	0	249753..249995	+	80	184152860	-	LAR_0205	-	hypothetical protein
206	 40.49	0	250181..251032	+	283	184152861	-	LAR_0206	-	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
207	 36.95	0	251172..252083	+	303	184152862	-	LAR_0207	-	zinc/iron ABC transporter substrate binding component
208	 40.92	0	252091..252762	+	223	184152863	-	LAR_0208	-	zinc/iron ABC transporter ATP-binding component
209	 38.22	0	252762..253559	+	265	184152864	-	LAR_0209	-	zinc/iron ABC transporter permease component
210	 41.84	0	253791..254636	+	281	184152865	-	LAR_0210	-	purine biosynthesis operon repressor
211	 40.86	0	254640..256007	+	455	184152866	-	LAR_0211	-	UDP-N-acetylglucosamine pyrophosphorylase
212	 41.31	0	256082..257071	+	329	184152867	-	LAR_0212	-	ribose-phosphate pyrophosphokinase
213	 39.57	0	257247..257984	+	245	184152868	-	LAR_0213	-	hypothetical protein
214	 39.78	0	258063..258884	-	273	184152869	-	LAR_0214	-	hypothetical protein
215	 41.15	0	258884..260251	-	455	184152870	-	LAR_0215	-	hypothetical protein
216	 40.85	0	260253..261077	-	274	184152871	-	LAR_0216	-	hypothetical protein
217	 34.31	-1	261278..261685	+	135	184152872	-	LAR_0217	-	transposase
218	 36.82	0	261685..262860	+	391	184152873	-	LAR_0218	-	transposase
219	 38.85	0	263087..263485	+	132	184152874	-	LAR_0219	-	hypothetical protein
220	 42.65	+1	263531..264088	+	185	184152875	-	LAR_0220	-	DNA-directed RNA polymerase delta subunit
221	 40.31	0	264265..265869	+	534	184152876	-	LAR_0221	-	CTP synthase
222	 42.88	+1	266382..267764	+	460	184152877	-	LAR_0222	-	reverse transcriptase/maturase family protein
223	 41.24	0	268048..269325	+	425	184152878	-	LAR_0223	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
224	 40.65	0	269418..269663	+	81	184152879	-	LAR_0224	-	50S ribosomal protein L31
225	 38.57	0	269825..271141	+	438	184152880	-	LAR_0225	-	PTS cellobiose-specific enzyme IIC component
226	 37.93	0	271125..272015	+	296	184152881	-	LAR_0226	-	hypothetical protein
227	 39.86	0	272065..272769	+	234	184152882	-	LAR_0227	-	sortase
228	 41.03	0	273170..273949	+	259	184152883	-	LAR_0228	-	triosephosphate isomerase
229	 42.68	+1	273961..274827	+	288	184152884	-	LAR_0229	-	fructose-bisphosphate aldolase
230	 43.84	+1	274847..275503	+	218	184152885	-	LAR_0230	-	phosphoglycerate mutase
231	 41.94	0	275542..276006	-	154	184152886	-	LAR_0231	-	phosphotyrosine protein phosphatase
232	 37.89	0	276136..276705	+	189	184152887	-	LAR_0232	-	hypothetical protein
233	 44.59	+1	276708..277604	+	298	184152888	-	LAR_0233	-	heat shock protein
234	 42.83	+1	277758..279137	+	459	184152889	-	LAR_0234	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino pimelate--D-alanyl-D-alanine ligase
235	 43.35	+1	279209..280705	+	498	184152890	-	LAR_0235	-	ATP-dependent RNA helicase
236	 43.25	+1	280786..281622	-	278	184152891	-	LAR_0236	-	hypothetical protein
237	 38.80	0	282115..283029	+	304	184152892	-	LAR_0237	-	glutaminase
238	 36.17	0	283175..283633	-	152	184152893	-	LAR_0238	-	transposase
239	 42.73	+1	284289..285671	+	460	184152894	-	LAR_0239	-	reverse transcriptase/maturase family protein
240	 38.84	0	285755..287044	-	429	184152895	-	LAR_0240	-	D-alanyl transfer protein DltD
241	 37.92	0	287037..287276	-	79	184152896	-	LAR_0241	-	D-alanyl carrier protein
242	 37.93	0	287296..288513	-	405	184152897	-	LAR_0242	-	D-alanyl transfer protein
243	 40.14	0	288513..290039	-	508	184152898	-	LAR_0243	-	D-alanine-D-alanyl carrier protein ligase
244	 39.39	0	290532..290894	+	120	184152899	-	LAR_0244	-	holo-[acyl-carrier protein] synthase
245	 42.11	0	290894..292021	+	375	184152900	-	LAR_0245	-	alanine racemase
246	 40.27	0	292040..292414	+	124	184152901	-	LAR_0246	-	hypothetical protein
247	 41.25	0	292605..293981	+	458	184152902	-	LAR_0247	-	cytosine transport protein
248	 40.52	0	293972..295210	+	412	184152903	-	LAR_0248	-	cytosine deaminase
249	 39.02	0	295595..296386	+	263	184152904	-	LAR_0249	-	2-oxo-hepta-3-ene-1,7-dioate hydratase
250	 39.12	0	296495..297133	-	212	184152905	-	LAR_0250	-	hypothetical protein
251	 40.11	0	297339..297899	+	186	184152906	-	LAR_0251	-	aminoacyl-tRNA hydrolase
252	 41.79	0	297921..301457	+	1178	184152907	-	LAR_0252	-	transcription-repair coupling factor
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.