IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1719	 40.42	0	1929451..1930395	-	314	184154374	-	LAR_1719	-	hypothetical protein
1720	 38.27	0	1930810..1932369	-	519	184154375	-	LAR_1720	-	hypothetical protein
1721	 39.30	0	1932532..1933185	-	217	184154376	-	LAR_1721	-	phosphoglycerate mutase
1722	 35.98	0	1933317..1933580	+	87	184154377	-	LAR_1722	-	hypothetical protein
1723	 37.51	0	1933706..1935835	+	709	184154378	-	LAR_1723	-	alkaline phosphatase superfamily protein
1724	 39.57	0	1935994..1937115	+	373	184154379	-	LAR_1724	-	glycerol dehydrogenase
1725	 36.96	0	1937279..1938133	-	284	184154380	-	LAR_1725	-	hypothetical protein
1726	 36.06	0	1938201..1939412	-	403	184154381	-	LAR_1726	-	D-alanyl-D-alanine carboxypeptidase
1727	 38.49	0	1939483..1940064	+	193	184154382	-	LAR_1727	-	hypothetical protein
1728	 38.05	0	1940263..1940919	-	218	184154383	-	LAR_1728	-	hypothetical protein
1729	 42.10	0	1943088..1943726	+	212	184154384	-	LAR_1729	-	putative sugar kinase
1730	 37.65	0	1943815..1944324	+	169	184154385	-	LAR_1730	-	hypothetical protein
1731	 39.75	0	1944450..1945727	-	425	184154386	-	LAR_1731	-	histidyl-tRNA synthase
1732	 36.68	0	1946049..1947245	-	398	184154387	-	LAR_1732	-	multidrug transport protein
1733	 37.46	0	1947247..1947876	-	209	184154388	-	LAR_1733	-	hypothetical protein
1734	 36.02	0	1948092..1948277	+	61	184154389	-	LAR_1734	-	hypothetical protein
1735	 36.72	0	1948410..1949354	-	314	184154390	-	LAR_1735	-	sucrose operon repressor
1736	 41.07	0	1949782..1951488	+	568	184154391	-	LAR_1736	-	putative muramidase
1737	 30.38	-2	1952075..1952311	-	78	184154392	-	LAR_1737	-	hypothetical protein
1738	 40.24	0	1952415..1954397	-	660	184154393	-	LAR_1738	-	peptide ABC transporter permease and ATP-binding components
1739	 35.94	0	1954495..1955184	-	229	184154394	-	LAR_1739	-	peptide ABC transporter ATP-binding component
1740	 36.36	0	1955202..1956260	-	352	184154395	-	LAR_1740	-	peptide ABC transporter permease component
1741	 36.26	0	1956271..1956783	-	170	184154396	-	LAR_1741	-	transcription regulator
1742	 41.15	0	1957046..1958056	-	336	184154397	-	LAR_1742	-	mannitol-2-dehydrogenase
1743	 40.80	0	1958627..1960219	+	530	184154398	-	LAR_1743	-	manganese transport protein
1744	 38.72	0	1960476..1961162	+	228	184154399	-	LAR_1744	-	hypothetical protein
1745	 40.66	0	1961413..1963296	+	627	184154400	-	LAR_1745	-	threonyl-tRNA synthase
1746	 36.18	0	1963875..1964507	-	210	184154401	-	LAR_1746	-	putative transport protein
1747	 39.72	0	1964467..1965108	-	213	184154402	-	LAR_1747	-	putative transport protein
1748	 40.76	0	1965118..1966410	-	430	184154403	-	LAR_1748	-	putative pyrophosphatase
1749	 39.78	0	1966640..1968034	+	464	184154404	-	LAR_1749	-	amino acid permease
1750	 36.99	0	1968099..1969055	-	318	184154405	-	LAR_1750	-	2-dehydropantoate 2-reductase
1751	 31.31	-2	1969675..1970217	+	180	184154406	-	LAR_1751	-	hypothetical protein
1752	 40.55	0	1970613..1971749	+	378	184154407	-	LAR_1752	-	putative methionine synthase
1753	 40.24	0	1971802..1972047	-	81	184154408	-	LAR_1753	-	hypothetical protein
1754	 32.88	-1	1972060..1972278	-	72	184154409	-	LAR_1754	-	hypothetical protein
1755	 37.61	0	1972413..1972646	-	77	184154410	-	LAR_1755	-	hypothetical protein
1756	 37.90	0	1972775..1973212	-	145	184154411	-	LAR_1756	-	putative acetyltransferase
1757	 39.57	0	1973391..1974047	-	218	184154412	-	LAR_1757	-	hypothetical protein
1758	 31.73	-2	1974175..1974486	-	103	184154413	-	LAR_1758	-	putative transcription regulator
1759	 39.22	0	1974575..1975186	+	203	184154414	-	LAR_1759	-	hypothetical protein
1760	 42.16	0	1975251..1975703	+	150	184154415	-	LAR_1760	-	hypothetical protein
1761	 36.15	0	1975696..1977009	-	437	184154416	-	LAR_1761	-	hypothetical protein
1762	 37.91	0	1977021..1978199	-	392	184154417	-	LAR_1762	-	multidrug transport protein
1763	 38.10	0	1978346..1979668	-	440	184154418	-	LAR_1763	-	aminopeptidase C
1764	 39.88	0	1979876..1980517	+	213	184154419	-	LAR_1764	-	hypothetical protein
1765	 40.01	0	1980663..1983194	+	843	184154420	-	LAR_1765	-	aminopeptidase N
1766	 37.22	0	1983360..1983977	+	205	184154421	-	LAR_1766	-	hypothetical protein
1767	 40.29	0	1984347..1985366	+	339	184154422	-	LAR_1767	-	aspartate-ammonia ligase
1768	 41.34	0	1985386..1986684	+	432	184154423	-	LAR_1768	-	asparaginyl-tRNA synthase
1769	 34.21	-1	1986878..1987558	-	226	184154424	-	LAR_1769	-	hypothetical protein
1770	 33.76	-1	1987574..1988737	-	387	184154425	-	LAR_1770	-	hypothetical protein
1771	 35.54	-1	1988934..1989431	+	165	184154426	-	LAR_1771	-	hypothetical protein
1772	 36.79	0	1989421..1990752	+	443	184154427	-	LAR_1772	-	glycosyltransferase
1773	 31.90	-2	1990730..1991566	+	278	184154428	-	LAR_1773	-	hypothetical protein
1774	 35.95	0	1991669..1992127	-	152	184154429	-	LAR_1774	-	transposase
1775	 40.77	0	1992381..1993052	-	223	184154430	-	LAR_1775	-	hypothetical protein
1776	 38.17	0	1993154..1993525	-	123	184154431	-	LAR_1776	-	hypothetical protein
1777	 39.07	0	1993631..1994275	-	214	184154432	-	LAR_1777	-	hypothetical protein
1778	 34.12	-1	1994275..1995417	-	380	184154433	-	LAR_1778	-	hypothetical protein
1779	 31.61	-2	1995509..1996087	+	192	184154434	-	LAR_1779	-	transcriptional regulator
1780	 40.39	0	1996188..1997066	-	292	184154435	-	LAR_1780	-	aldo-keto reductase
1781	 37.34	0	1997189..1998061	+	290	184154436	-	LAR_1781	-	transcription regulator
1782	 42.73	+1	1998139..1999128	+	329	184154437	-	LAR_1782	-	L-asparaginase
1783	 39.42	0	1999187..2000188	-	333	184154438	-	LAR_1783	-	extracellular protein
1784	 46.22	+2	2000346..2001548	-	400	184154439	-	LAR_1784	-	putative aminotransferase
1785	 46.48	+2	2001585..2002535	-	316	184154440	-	LAR_1785	-	L-2-hydroxyisocaproate dehydrogenase
1786	 44.16	+1	2002586..2003398	-	270	184154441	-	LAR_1786	-	2-oxo-hept-3-ene-1,7-dioate hydratase
1787	 38.45	0	2003934..2004656	-	240	184154442	-	LAR_1787	-	hypothetical protein
1788	 40.94	0	2004746..2005297	-	183	184154443	-	LAR_1788	-	acetyltransferase
1789	 38.05	0	2005393..2006262	+	289	184154444	-	LAR_1789	-	transcriptional regulator
1790	 38.07	0	2006321..2006806	-	161	184154445	-	LAR_1790	-	hypothetical protein
1791	 42.06	0	2007299..2007619	+	106	184154446	-	LAR_1791	-	hypothetical protein
1792	 36.77	0	2007706..2008548	+	280	184154447	-	LAR_1792	-	hypothetical protein
1793	 40.40	0	2008563..2009723	+	386	184154448	-	LAR_1793	-	putative aminotransferase
1794	 34.95	-1	2010381..2011310	+	309	184154449	-	LAR_1794	-	putative transport protein
1795	 39.68	0	2011412..2012089	+	225	184154450	-	LAR_1795	-	hypothetical protein
1796	 42.41	+1	2012917..2013885	-	322	184154451	-	LAR_1796	-	transposase
1797	 42.35	0	2014896..2015150	+	84	184154452	-	LAR_1797	-	hypothetical protein
1798	 30.89	-2	2015269..2015595	-	108	184154453	-	LAR_1798	-	hypothetical protein
1799	 37.58	0	2016089..2016583	+	164	184154454	-	LAR_1799	-	hypothetical protein
1800	 37.31	0	2016603..2016929	+	108	184154455	-	LAR_1800	-	hypothetical protein
1801	 37.54	0	2017003..2018025	-	340	184154456	-	LAR_1801	-	putative penicillin-binding protein class C
1802	 37.06	0	2018239..2018775	+	178	184154457	-	LAR_1802	-	hypoxanthine-guanine phosphoribosyltransferase
1803	 41.15	0	2018906..2019583	+	225	184154458	-	LAR_1803	-	hypothetical protein
1804	 38.07	0	2019603..2020235	+	210	184154459	-	LAR_1804	-	hypothetical protein
1805	 38.38	0	2020528..2021181	-	217	184154460	-	LAR_1805	-	hypothetical protein
1806	 35.50	-1	2021565..2022257	-	230	184154461	-	LAR_1806	-	hypothetical protein
1807	 40.19	0	2022363..2023763	+	466	184154462	-	LAR_1807	-	transcriptional regulator
1808	 40.98	0	2023847..2025415	-	522	184154463	-	LAR_1808	-	hypothetical protein
1809	 39.35	0	2025563..2026426	-	287	184154464	-	LAR_1809	-	aldo-keto reductase
1810	 39.16	0	2026568..2027065	-	165	184154465	-	LAR_1810	-	putative phosphinothricin N-acetyltransferase
1811	 38.61	0	2027103..2027708	-	201	184154466	-	LAR_1811	-	signal peptidase I
1812	 36.79	0	2028021..2029265	-	414	184154467	-	LAR_1812	-	hypothetical protein
1813	 38.81	0	2029283..2030833	-	516	184154468	-	LAR_1813	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
1814	 39.84	0	2030975..2032894	-	639	184154469	-	LAR_1814	-	asparagine synthase
1815	 43.77	+1	2033093..2035018	-	641	184154470	-	LAR_1815	-	cell division protein
1816	 41.90	0	2035048..2036436	-	462	184154471	-	LAR_1816	-	thiophene and furan oxidation protein ThdF
1817	 43.10	+1	2036593..2037360	-	255	184154472	-	LAR_1817	-	hypothetical protein
1818	 40.89	0	2037456..2038289	-	277	184154473	-	LAR_1818	-	cell division protein
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.