IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1654	 42.94	+1	1857751..1859187	+	478	184154309	-	LAR_1654	-	6-phosphogluconate dehydrogenase
1655	 37.69	0	1859687..1861639	+	650	184154310	-	LAR_1655	-	sugar transport protein
1656	 39.57	0	1861869..1862333	-	154	184154311	-	LAR_1656	-	hypothetical protein
1657	 36.94	0	1862547..1863017	+	156	184154312	-	LAR_1657	-	transcription regulator
1658	 39.57	0	1863066..1864379	-	437	184154313	-	LAR_1658	-	proton/sodium-glutamate symport protein
1659	 39.87	0	1864629..1865255	+	208	184154314	-	LAR_1659	-	putative alkaline phosphatase
1660	 41.49	0	1866600..1867592	-	330	184154315	-	LAR_1660	-	galactose operon repressor
1661	 40.15	0	1867630..1869081	-	483	184154316	-	LAR_1661	-	galactose-1-phosphate uridylyltransferase
1662	 38.93	0	1869108..1870286	-	392	184154317	-	LAR_1662	-	galactokinase
1663	 41.59	0	1870481..1871449	+	322	184154318	-	LAR_1663	-	hypothetical protein
1664	 41.25	0	1871479..1872261	+	260	184154319	-	LAR_1664	-	putative protein-tyrosine phosphatase
1665	 40.24	0	1872298..1872804	+	168	184154320	-	LAR_1665	-	hypothetical protein
1666	 36.40	0	1872782..1873042	+	86	184154321	-	LAR_1666	-	hypothetical protein
1667	 41.28	0	1873238..1873564	-	108	184154322	-	LAR_1667	-	hypothetical protein
1668	 40.73	0	1873588..1874709	-	373	184154323	-	LAR_1668	-	hypothetical protein
1669	 37.37	0	1874843..1875313	+	156	184154324	-	LAR_1669	-	transcription elongation factor GreA
1670	 38.78	0	1875565..1876317	+	250	184154325	-	LAR_1670	-	hypothetical protein
1671	 38.08	0	1876511..1877353	-	280	184154326	-	LAR_1671	-	oxydoreductases
1672	 38.33	0	1877472..1878152	+	226	184154327	-	LAR_1672	-	two-component response regulator
1673	 36.12	0	1878121..1879125	+	334	184154328	-	LAR_1673	-	two-component sensor histidine kinase
1674	 41.80	0	1879238..1879993	+	251	184154329	-	LAR_1674	-	ABC transporter ATP-binding component
1675	 37.95	0	1879993..1881921	+	642	184154330	-	LAR_1675	-	ABC transporter permease and substrate binding components
1676	 40.22	0	1882162..1882989	+	275	184154331	-	LAR_1676	-	homoserine O-succinyltransferase
1677	 41.99	0	1882995..1883918	+	307	184154332	-	LAR_1677	-	cysteine synthase
1678	 37.95	0	1884135..1885628	-	497	184154333	-	LAR_1678	-	cardiolipinsynthase
1679	 39.62	0	1885704..1886864	-	386	184154334	-	LAR_1679	-	putative transport protein
1680	 39.57	0	1886966..1887478	-	170	184154335	-	LAR_1680	-	hypothetical protein
1681	 30.60	-2	1887475..1888095	-	206	184154336	-	LAR_1681	-	transcription regulator
1682	 41.21	0	1888239..1890143	-	634	184154337	-	LAR_1682	-	endopeptidase O
1683	 40.74	0	1890217..1890513	-	98	184154338	-	LAR_1683	-	hypothetical protein
1684	 41.45	0	1890514..1891806	-	430	184154339	-	LAR_1684	-	hypothetical protein
1685	 42.50	+1	1891803..1892948	-	381	184154340	-	LAR_1685	-	hypothetical protein
1686	 40.13	0	1892952..1893584	-	210	184154341	-	LAR_1686	-	3-methyladenine DNA glycosylase
1687	 38.13	0	1893644..1894018	+	124	184154342	-	LAR_1687	-	hypothetical protein
1688	 39.08	0	1894310..1894483	-	57	184154343	-	LAR_1688	-	hypothetical protein
1689	 38.89	0	1894486..1895169	-	227	184154344	-	LAR_1689	-	putative NAD(P)H oxidoreductase
1690	 37.38	0	1895175..1895495	-	106	184154345	-	LAR_1690	-	hypothetical protein
1691	 39.59	0	1895526..1896500	-	324	184154346	-	LAR_1691	-	hypothetical protein
1692	 37.87	0	1896590..1897582	-	330	184154347	-	LAR_1692	-	hypothetical protein
1693	 39.65	0	1897810..1898094	+	94	184154348	-	LAR_1693	-	hypothetical protein
1694	 40.64	0	1898281..1899375	-	364	184154349	-	LAR_1694	-	hypothetical protein
1695	 42.56	+1	1899496..1900731	+	411	184154350	-	LAR_1695	-	hypothetical protein
1696	 44.59	+1	1901086..1902471	+	461	184154351	-	LAR_1696	-	branched-chain amino acid transport protein
1697	 38.38	0	1902544..1903137	-	197	184154352	-	LAR_1697	-	putative N-acetylmuramoyl-L-alanine amidase
1698	 39.36	0	1903214..1903993	-	259	184154353	-	LAR_1698	-	hypothetical protein
1699	 42.28	0	1904034..1905575	-	513	184154354	-	LAR_1699	-	ABC transporter ATP-binding component
1700	 31.17	-2	1907170..1907907	+	245	184154355	-	LAR_1700	-	hypothetical protein
1701	 45.32	+1	1908809..1909801	+	330	184154356	-	LAR_1701	-	hypothetical protein
1702	 40.56	0	1910176..1911171	+	331	184154357	-	LAR_1702	-	ABC transporter substrate binding component
1703	 42.44	+1	1911168..1912067	+	299	184154358	-	LAR_1703	-	ABC transporter permease component
1704	 40.65	0	1912060..1912824	+	254	184154359	-	LAR_1704	-	ABC transporter ATP-binding component
1705	 37.77	0	1912892..1913455	+	187	184154360	-	LAR_1705	-	hypothetical protein
1706	 35.74	-1	1913503..1913835	+	110	184154361	-	LAR_1706	-	transcriptional regulator
1707	 40.36	0	1914064..1915386	+	440	184154362	-	LAR_1707	-	multidrug transport protein
1708	 39.31	0	1915457..1915774	-	105	184154363	-	LAR_1708	-	thioredoxin
1709	 35.85	-1	1915776..1916531	-	251	184154364	-	LAR_1709	-	hypothetical protein
1710	 40.00	0	1916550..1917479	-	309	184154365	-	LAR_1710	-	pseudouridylate synthase
1711	 37.25	0	1917617..1918534	+	305	184154366	-	LAR_1711	-	magnesium transport protein
1712	 38.91	0	1918713..1920146	-	477	184154367	-	LAR_1712	-	dipeptidase
1713	 41.89	0	1920500..1921843	+	447	184154368	-	LAR_1713	-	xanthine-uracil transport protein
1714	 41.99	0	1922155..1923540	+	461	184154369	-	LAR_1714	-	Na-H antiporter
1715	 37.48	0	1923821..1925122	-	433	184154370	-	LAR_1715	-	histidyl-tRNA synthase
1716	 33.90	-1	1925451..1925975	-	174	184154371	-	LAR_1716	-	hypothetical protein
1717	 40.06	0	1926216..1927151	-	311	184154372	-	LAR_1717	-	histidine decarboxylase
1718	 39.59	0	1927408..1928862	-	484	184154373	-	LAR_1718	-	arginine-ornithine antiporter
1719	 40.42	0	1929451..1930395	-	314	184154374	-	LAR_1719	-	hypothetical protein
1720	 38.27	0	1930810..1932369	-	519	184154375	-	LAR_1720	-	hypothetical protein
1721	 39.30	0	1932532..1933185	-	217	184154376	-	LAR_1721	-	phosphoglycerate mutase
1722	 35.98	0	1933317..1933580	+	87	184154377	-	LAR_1722	-	hypothetical protein
1723	 37.51	0	1933706..1935835	+	709	184154378	-	LAR_1723	-	alkaline phosphatase superfamily protein
1724	 39.57	0	1935994..1937115	+	373	184154379	-	LAR_1724	-	glycerol dehydrogenase
1725	 36.96	0	1937279..1938133	-	284	184154380	-	LAR_1725	-	hypothetical protein
1726	 36.06	0	1938201..1939412	-	403	184154381	-	LAR_1726	-	D-alanyl-D-alanine carboxypeptidase
1727	 38.49	0	1939483..1940064	+	193	184154382	-	LAR_1727	-	hypothetical protein
1728	 38.05	0	1940263..1940919	-	218	184154383	-	LAR_1728	-	hypothetical protein
1729	 42.10	0	1943088..1943726	+	212	184154384	-	LAR_1729	-	putative sugar kinase
1730	 37.65	0	1943815..1944324	+	169	184154385	-	LAR_1730	-	hypothetical protein
1731	 39.75	0	1944450..1945727	-	425	184154386	-	LAR_1731	-	histidyl-tRNA synthase
1732	 36.68	0	1946049..1947245	-	398	184154387	-	LAR_1732	-	multidrug transport protein
1733	 37.46	0	1947247..1947876	-	209	184154388	-	LAR_1733	-	hypothetical protein
1734	 36.02	0	1948092..1948277	+	61	184154389	-	LAR_1734	-	hypothetical protein
1735	 36.72	0	1948410..1949354	-	314	184154390	-	LAR_1735	-	sucrose operon repressor
1736	 41.07	0	1949782..1951488	+	568	184154391	-	LAR_1736	-	putative muramidase
1737	 30.38	-2	1952075..1952311	-	78	184154392	-	LAR_1737	-	hypothetical protein
1738	 40.24	0	1952415..1954397	-	660	184154393	-	LAR_1738	-	peptide ABC transporter permease and ATP-binding components
1739	 35.94	0	1954495..1955184	-	229	184154394	-	LAR_1739	-	peptide ABC transporter ATP-binding component
1740	 36.36	0	1955202..1956260	-	352	184154395	-	LAR_1740	-	peptide ABC transporter permease component
1741	 36.26	0	1956271..1956783	-	170	184154396	-	LAR_1741	-	transcription regulator
1742	 41.15	0	1957046..1958056	-	336	184154397	-	LAR_1742	-	mannitol-2-dehydrogenase
1743	 40.80	0	1958627..1960219	+	530	184154398	-	LAR_1743	-	manganese transport protein
1744	 38.72	0	1960476..1961162	+	228	184154399	-	LAR_1744	-	hypothetical protein
1745	 40.66	0	1961413..1963296	+	627	184154400	-	LAR_1745	-	threonyl-tRNA synthase
1746	 36.18	0	1963875..1964507	-	210	184154401	-	LAR_1746	-	putative transport protein
1747	 39.72	0	1964467..1965108	-	213	184154402	-	LAR_1747	-	putative transport protein
1748	 40.76	0	1965118..1966410	-	430	184154403	-	LAR_1748	-	putative pyrophosphatase
1749	 39.78	0	1966640..1968034	+	464	184154404	-	LAR_1749	-	amino acid permease
1750	 36.99	0	1968099..1969055	-	318	184154405	-	LAR_1750	-	2-dehydropantoate 2-reductase
1751	 31.31	-2	1969675..1970217	+	180	184154406	-	LAR_1751	-	hypothetical protein
1752	 40.55	0	1970613..1971749	+	378	184154407	-	LAR_1752	-	putative methionine synthase
1753	 40.24	0	1971802..1972047	-	81	184154408	-	LAR_1753	-	hypothetical protein
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.