IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1619	 33.08	-1	1827718..1828512	-	264	184154274	-	LAR_1619	-	hypothetical protein
1620	 39.94	0	1828585..1828932	-	115	184154275	-	LAR_1620	-	propanediol utilization protein PduU
1621	 36.62	0	1828948..1830132	-	394	184154276	-	LAR_1621	-	acetate kinase PduW
1622	 37.97	0	1830156..1831277	-	373	184154277	-	LAR_1622	-	propanol dehydrogenase PduQ
1623	 39.96	0	1831295..1832728	-	477	184154278	-	LAR_1623	-	propanediol utilization protein PduP
1624	 36.71	0	1832731..1833204	-	157	184154279	-	LAR_1624	-	propanediol utilization protein PduObis
1625	 34.18	-1	1833207..1833794	-	195	184154280	-	LAR_1625	-	propanediol utilization protein PduO
1626	 40.14	0	1833815..1834093	-	92	184154281	-	LAR_1626	-	propanediol utilization protein PduN
1627	 32.74	-1	1834075..1834578	-	167	184154282	-	LAR_1627	-	propanediol utilization protein PduM
1628	 40.93	0	1834610..1835254	-	214	184154283	-	LAR_1628	-	propanediol utilization protein PduL
1629	 42.27	0	1835283..1835573	-	96	184154284	-	LAR_1629	-	propanediol utilization protein PduJ
1630	 37.89	0	1835586..1836155	-	189	184154285	-	LAR_1630	-	propanediol utilization protein PduK
1631	 35.94	0	1836163..1836546	-	127	184154286	-	LAR_1631	-	propanediol dehydratase reactivation protein PduH
1632	 37.49	0	1836509..1838359	-	616	184154287	-	LAR_1632	-	propanediol dehydratase reactivation protein PduG
1633	 38.57	0	1838390..1838905	-	171	184154288	-	LAR_1633	-	glycerol dehydratase small subunit PduE
1634	 39.38	0	1838918..1839628	-	236	184154289	-	LAR_1634	-	glycerol dehydratase medium subunit PduD
1635	 40.31	0	1839646..1841322	-	558	184154290	-	LAR_1635	-	glycerol dehydratase large subunit PduC
1636	 41.42	0	1841347..1842063	-	238	184154291	-	LAR_1636	-	propanediol utilization protein PduB
1637	 40.43	0	1842161..1842442	-	93	184154292	-	LAR_1637	-	propanediol utilization protein PduA
1638	 28.52	-2	1842696..1843775	+	359	184154293	-	LAR_1638	-	transcriptional regulator PocR
1639	 34.89	-1	1843816..1844649	-	277	184154294	-	LAR_1639	-	ethanolamine utilization protein EutJ
1640	 38.70	0	1844734..1845441	-	235	184154295	-	LAR_1640	-	glycerol uptake facilitator protein PduF
1641	 36.51	0	1845611..1846555	-	314	184154296	-	LAR_1641	-	hypothetical protein
1642	 37.38	0	1846615..1847454	+	279	184154297	-	LAR_1642	-	hypothetical protein
1643	 37.62	0	1847457..1848575	+	372	184154298	-	LAR_1643	-	hypothetical protein
1644	 39.39	0	1848725..1849450	-	241	184154299	-	LAR_1644	-	hypothetical protein
1645	 35.98	0	1849474..1849926	-	150	184154300	-	LAR_1645	-	transcriptional regulator
1646	 34.66	-1	1849994..1850521	-	175	184154301	-	LAR_1646	-	hypothetical protein
1647	 39.85	0	1850538..1851074	-	178	184154302	-	LAR_1647	-	hypothetical protein
1648	 37.85	0	1851080..1851943	-	287	184154303	-	LAR_1648	-	ABC transporter ATP-binding component
1649	 38.53	0	1852116..1853444	+	442	184154304	-	LAR_1649	-	hypothetical protein
1650	 41.03	0	1853556..1854023	+	155	184154305	-	LAR_1650	-	ribonucleotide reductase protein
1651	 38.73	0	1854073..1854498	-	141	184154306	-	LAR_1651	-	hypothetical protein
1652	 37.40	0	1854665..1855843	+	392	184154307	-	LAR_1652	-	putative transport protein
1653	 40.15	0	1856126..1857607	+	493	184154308	-	LAR_1653	-	glucose-6-phosphate 1-dehydrogenase
1654	 42.94	+1	1857751..1859187	+	478	184154309	-	LAR_1654	-	6-phosphogluconate dehydrogenase
1655	 37.69	0	1859687..1861639	+	650	184154310	-	LAR_1655	-	sugar transport protein
1656	 39.57	0	1861869..1862333	-	154	184154311	-	LAR_1656	-	hypothetical protein
1657	 36.94	0	1862547..1863017	+	156	184154312	-	LAR_1657	-	transcription regulator
1658	 39.57	0	1863066..1864379	-	437	184154313	-	LAR_1658	-	proton/sodium-glutamate symport protein
1659	 39.87	0	1864629..1865255	+	208	184154314	-	LAR_1659	-	putative alkaline phosphatase
1660	 41.49	0	1866600..1867592	-	330	184154315	-	LAR_1660	-	galactose operon repressor
1661	 40.15	0	1867630..1869081	-	483	184154316	-	LAR_1661	-	galactose-1-phosphate uridylyltransferase
1662	 38.93	0	1869108..1870286	-	392	184154317	-	LAR_1662	-	galactokinase
1663	 41.59	0	1870481..1871449	+	322	184154318	-	LAR_1663	-	hypothetical protein
1664	 41.25	0	1871479..1872261	+	260	184154319	-	LAR_1664	-	putative protein-tyrosine phosphatase
1665	 40.24	0	1872298..1872804	+	168	184154320	-	LAR_1665	-	hypothetical protein
1666	 36.40	0	1872782..1873042	+	86	184154321	-	LAR_1666	-	hypothetical protein
1667	 41.28	0	1873238..1873564	-	108	184154322	-	LAR_1667	-	hypothetical protein
1668	 40.73	0	1873588..1874709	-	373	184154323	-	LAR_1668	-	hypothetical protein
1669	 37.37	0	1874843..1875313	+	156	184154324	-	LAR_1669	-	transcription elongation factor GreA
1670	 38.78	0	1875565..1876317	+	250	184154325	-	LAR_1670	-	hypothetical protein
1671	 38.08	0	1876511..1877353	-	280	184154326	-	LAR_1671	-	oxydoreductases
1672	 38.33	0	1877472..1878152	+	226	184154327	-	LAR_1672	-	two-component response regulator
1673	 36.12	0	1878121..1879125	+	334	184154328	-	LAR_1673	-	two-component sensor histidine kinase
1674	 41.80	0	1879238..1879993	+	251	184154329	-	LAR_1674	-	ABC transporter ATP-binding component
1675	 37.95	0	1879993..1881921	+	642	184154330	-	LAR_1675	-	ABC transporter permease and substrate binding components
1676	 40.22	0	1882162..1882989	+	275	184154331	-	LAR_1676	-	homoserine O-succinyltransferase
1677	 41.99	0	1882995..1883918	+	307	184154332	-	LAR_1677	-	cysteine synthase
1678	 37.95	0	1884135..1885628	-	497	184154333	-	LAR_1678	-	cardiolipinsynthase
1679	 39.62	0	1885704..1886864	-	386	184154334	-	LAR_1679	-	putative transport protein
1680	 39.57	0	1886966..1887478	-	170	184154335	-	LAR_1680	-	hypothetical protein
1681	 30.60	-2	1887475..1888095	-	206	184154336	-	LAR_1681	-	transcription regulator
1682	 41.21	0	1888239..1890143	-	634	184154337	-	LAR_1682	-	endopeptidase O
1683	 40.74	0	1890217..1890513	-	98	184154338	-	LAR_1683	-	hypothetical protein
1684	 41.45	0	1890514..1891806	-	430	184154339	-	LAR_1684	-	hypothetical protein
1685	 42.50	+1	1891803..1892948	-	381	184154340	-	LAR_1685	-	hypothetical protein
1686	 40.13	0	1892952..1893584	-	210	184154341	-	LAR_1686	-	3-methyladenine DNA glycosylase
1687	 38.13	0	1893644..1894018	+	124	184154342	-	LAR_1687	-	hypothetical protein
1688	 39.08	0	1894310..1894483	-	57	184154343	-	LAR_1688	-	hypothetical protein
1689	 38.89	0	1894486..1895169	-	227	184154344	-	LAR_1689	-	putative NAD(P)H oxidoreductase
1690	 37.38	0	1895175..1895495	-	106	184154345	-	LAR_1690	-	hypothetical protein
1691	 39.59	0	1895526..1896500	-	324	184154346	-	LAR_1691	-	hypothetical protein
1692	 37.87	0	1896590..1897582	-	330	184154347	-	LAR_1692	-	hypothetical protein
1693	 39.65	0	1897810..1898094	+	94	184154348	-	LAR_1693	-	hypothetical protein
1694	 40.64	0	1898281..1899375	-	364	184154349	-	LAR_1694	-	hypothetical protein
1695	 42.56	+1	1899496..1900731	+	411	184154350	-	LAR_1695	-	hypothetical protein
1696	 44.59	+1	1901086..1902471	+	461	184154351	-	LAR_1696	-	branched-chain amino acid transport protein
1697	 38.38	0	1902544..1903137	-	197	184154352	-	LAR_1697	-	putative N-acetylmuramoyl-L-alanine amidase
1698	 39.36	0	1903214..1903993	-	259	184154353	-	LAR_1698	-	hypothetical protein
1699	 42.28	0	1904034..1905575	-	513	184154354	-	LAR_1699	-	ABC transporter ATP-binding component
1700	 31.17	-2	1907170..1907907	+	245	184154355	-	LAR_1700	-	hypothetical protein
1701	 45.32	+1	1908809..1909801	+	330	184154356	-	LAR_1701	-	hypothetical protein
1702	 40.56	0	1910176..1911171	+	331	184154357	-	LAR_1702	-	ABC transporter substrate binding component
1703	 42.44	+1	1911168..1912067	+	299	184154358	-	LAR_1703	-	ABC transporter permease component
1704	 40.65	0	1912060..1912824	+	254	184154359	-	LAR_1704	-	ABC transporter ATP-binding component
1705	 37.77	0	1912892..1913455	+	187	184154360	-	LAR_1705	-	hypothetical protein
1706	 35.74	-1	1913503..1913835	+	110	184154361	-	LAR_1706	-	transcriptional regulator
1707	 40.36	0	1914064..1915386	+	440	184154362	-	LAR_1707	-	multidrug transport protein
1708	 39.31	0	1915457..1915774	-	105	184154363	-	LAR_1708	-	thioredoxin
1709	 35.85	-1	1915776..1916531	-	251	184154364	-	LAR_1709	-	hypothetical protein
1710	 40.00	0	1916550..1917479	-	309	184154365	-	LAR_1710	-	pseudouridylate synthase
1711	 37.25	0	1917617..1918534	+	305	184154366	-	LAR_1711	-	magnesium transport protein
1712	 38.91	0	1918713..1920146	-	477	184154367	-	LAR_1712	-	dipeptidase
1713	 41.89	0	1920500..1921843	+	447	184154368	-	LAR_1713	-	xanthine-uracil transport protein
1714	 41.99	0	1922155..1923540	+	461	184154369	-	LAR_1714	-	Na-H antiporter
1715	 37.48	0	1923821..1925122	-	433	184154370	-	LAR_1715	-	histidyl-tRNA synthase
1716	 33.90	-1	1925451..1925975	-	174	184154371	-	LAR_1716	-	hypothetical protein
1717	 40.06	0	1926216..1927151	-	311	184154372	-	LAR_1717	-	histidine decarboxylase
1718	 39.59	0	1927408..1928862	-	484	184154373	-	LAR_1718	-	arginine-ornithine antiporter
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.