IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1586	 32.94	-1	1799458..1800219	-	253	184154241	-	LAR_1586	-	cobalamin 5'-phosphate synthase CobS
1587	 36.72	0	1800228..1800818	-	196	184154242	-	LAR_1587	-	cobinamide kinase/cobinamide phosphate guanylyltransferase CobU
1588	 39.12	0	1800881..1802176	-	431	184154243	-	LAR_1588	-	glutamate-1-semialdehyde 2,1-aminotransferase HemL
1589	 38.17	0	1802196..1803167	-	323	184154244	-	LAR_1589	-	delta-aminolevulinic acid dehydratase HemB
1590	 37.04	0	1803173..1804090	-	305	184154245	-	LAR_1590	-	porphobilinogen deaminase HemC
1591	 35.31	-1	1804080..1805345	-	421	184154246	-	LAR_1591	-	glutamyl-tRNA reductase HemA
1592	 34.42	-1	1805347..1805805	-	152	184154247	-	LAR_1592	-	putative siroheme synthase CysG
1593	 38.78	0	1805820..1807325	-	501	184154248	-	LAR_1593	-	cobyric acid synthase CbiP
1594	 34.45	-1	1807400..1808203	-	267	184154249	-	LAR_1594	-	cobalt ABC transporter ATP-binding component CbiO
1595	 33.04	-1	1808215..1808892	-	225	184154250	-	LAR_1595	-	cobalt ABC transporter permease component CbiQ
1596	 34.94	-1	1808913..1809224	-	103	184154251	-	LAR_1596	-	cobalt ABC transporter permease component CbiN
1597	 38.55	0	1809221..1809967	-	248	184154252	-	LAR_1597	-	cobalamin biosynthesis protein CbiM
1598	 34.03	-1	1809951..1810664	-	237	184154253	-	LAR_1598	-	precorrin-2 C20-methyltransferase CbiL
1599	 36.67	0	1810666..1811445	-	259	184154254	-	LAR_1599	-	cobalt chelatase CbiK
1600	 37.92	0	1811438..1812832	-	464	184154255	-	LAR_1600	-	uroporphyrinogen-III C-methyltransferase CobA
1601	 37.68	0	1812822..1813580	-	252	184154256	-	LAR_1601	-	precorrin-6X reductase CbiJ
1602	 38.71	0	1813577..1814302	-	241	184154257	-	LAR_1602	-	precorrin-3B C17-methyltransferase CbiH
1603	 37.59	0	1814315..1815370	-	351	184154258	-	LAR_1603	-	cobalamin biosynthesis protein CbiG
1604	 40.03	0	1815373..1816134	-	253	184154259	-	LAR_1604	-	precorrin-4 C11-methyltransferase CbiF
1605	 34.05	-1	1816151..1816705	-	184	184154260	-	LAR_1605	-	precorrin-8W decarboxylase CbiT
1606	 37.31	0	1816698..1817300	-	200	184154261	-	LAR_1606	-	precorrin-6Y C5,15-methyltransferase CbiE
1607	 38.72	0	1817297..1818448	-	383	184154262	-	LAR_1607	-	cobalamin biosynthesis protein CbiD
1608	 36.11	0	1818429..1819112	-	227	184154263	-	LAR_1608	-	precorrin-8X methylmutase CbiC
1609	 36.88	0	1819118..1820077	-	319	184154264	-	LAR_1609	-	cobalamin biosynthesis protein CbiB
1610	 35.16	-1	1820074..1821438	-	454	184154265	-	LAR_1610	-	cobyrinic acid A,C-diamide synthase CbiA
1611	 34.62	-1	1821438..1822526	-	362	184154266	-	LAR_1611	-	L-threonine-O-3-phosphate decarboxylase CobD
1612	 42.00	0	1822871..1823839	-	322	184154267	-	LAR_1612	-	transposase
1613	 35.45	-1	1823968..1824534	+	188	184154268	-	LAR_1613	-	putative ATP:cob(I)alamin adenosyltransferase
1614	 34.05	-1	1824582..1825424	-	280	184154269	-	LAR_1614	-	hypothetical protein
1615	 36.67	0	1825446..1825895	-	149	184154270	-	LAR_1615	-	flavodoxin
1616	 34.50	-1	1826002..1826430	+	142	184154271	-	LAR_1616	-	propanediol utilization protein PduV
1617	 29.03	-2	1826423..1826980	-	185	184154272	-	LAR_1617	-	hypothetical protein
1618	 33.02	-1	1826977..1827621	-	214	184154273	-	LAR_1618	-	phosphoglycerate mutase
1619	 33.08	-1	1827718..1828512	-	264	184154274	-	LAR_1619	-	hypothetical protein
1620	 39.94	0	1828585..1828932	-	115	184154275	-	LAR_1620	-	propanediol utilization protein PduU
1621	 36.62	0	1828948..1830132	-	394	184154276	-	LAR_1621	-	acetate kinase PduW
1622	 37.97	0	1830156..1831277	-	373	184154277	-	LAR_1622	-	propanol dehydrogenase PduQ
1623	 39.96	0	1831295..1832728	-	477	184154278	-	LAR_1623	-	propanediol utilization protein PduP
1624	 36.71	0	1832731..1833204	-	157	184154279	-	LAR_1624	-	propanediol utilization protein PduObis
1625	 34.18	-1	1833207..1833794	-	195	184154280	-	LAR_1625	-	propanediol utilization protein PduO
1626	 40.14	0	1833815..1834093	-	92	184154281	-	LAR_1626	-	propanediol utilization protein PduN
1627	 32.74	-1	1834075..1834578	-	167	184154282	-	LAR_1627	-	propanediol utilization protein PduM
1628	 40.93	0	1834610..1835254	-	214	184154283	-	LAR_1628	-	propanediol utilization protein PduL
1629	 42.27	0	1835283..1835573	-	96	184154284	-	LAR_1629	-	propanediol utilization protein PduJ
1630	 37.89	0	1835586..1836155	-	189	184154285	-	LAR_1630	-	propanediol utilization protein PduK
1631	 35.94	0	1836163..1836546	-	127	184154286	-	LAR_1631	-	propanediol dehydratase reactivation protein PduH
1632	 37.49	0	1836509..1838359	-	616	184154287	-	LAR_1632	-	propanediol dehydratase reactivation protein PduG
1633	 38.57	0	1838390..1838905	-	171	184154288	-	LAR_1633	-	glycerol dehydratase small subunit PduE
1634	 39.38	0	1838918..1839628	-	236	184154289	-	LAR_1634	-	glycerol dehydratase medium subunit PduD
1635	 40.31	0	1839646..1841322	-	558	184154290	-	LAR_1635	-	glycerol dehydratase large subunit PduC
1636	 41.42	0	1841347..1842063	-	238	184154291	-	LAR_1636	-	propanediol utilization protein PduB
1637	 40.43	0	1842161..1842442	-	93	184154292	-	LAR_1637	-	propanediol utilization protein PduA
1638	 28.52	-2	1842696..1843775	+	359	184154293	-	LAR_1638	-	transcriptional regulator PocR
1639	 34.89	-1	1843816..1844649	-	277	184154294	-	LAR_1639	-	ethanolamine utilization protein EutJ
1640	 38.70	0	1844734..1845441	-	235	184154295	-	LAR_1640	-	glycerol uptake facilitator protein PduF
1641	 36.51	0	1845611..1846555	-	314	184154296	-	LAR_1641	-	hypothetical protein
1642	 37.38	0	1846615..1847454	+	279	184154297	-	LAR_1642	-	hypothetical protein
1643	 37.62	0	1847457..1848575	+	372	184154298	-	LAR_1643	-	hypothetical protein
1644	 39.39	0	1848725..1849450	-	241	184154299	-	LAR_1644	-	hypothetical protein
1645	 35.98	0	1849474..1849926	-	150	184154300	-	LAR_1645	-	transcriptional regulator
1646	 34.66	-1	1849994..1850521	-	175	184154301	-	LAR_1646	-	hypothetical protein
1647	 39.85	0	1850538..1851074	-	178	184154302	-	LAR_1647	-	hypothetical protein
1648	 37.85	0	1851080..1851943	-	287	184154303	-	LAR_1648	-	ABC transporter ATP-binding component
1649	 38.53	0	1852116..1853444	+	442	184154304	-	LAR_1649	-	hypothetical protein
1650	 41.03	0	1853556..1854023	+	155	184154305	-	LAR_1650	-	ribonucleotide reductase protein
1651	 38.73	0	1854073..1854498	-	141	184154306	-	LAR_1651	-	hypothetical protein
1652	 37.40	0	1854665..1855843	+	392	184154307	-	LAR_1652	-	putative transport protein
1653	 40.15	0	1856126..1857607	+	493	184154308	-	LAR_1653	-	glucose-6-phosphate 1-dehydrogenase
1654	 42.94	+1	1857751..1859187	+	478	184154309	-	LAR_1654	-	6-phosphogluconate dehydrogenase
1655	 37.69	0	1859687..1861639	+	650	184154310	-	LAR_1655	-	sugar transport protein
1656	 39.57	0	1861869..1862333	-	154	184154311	-	LAR_1656	-	hypothetical protein
1657	 36.94	0	1862547..1863017	+	156	184154312	-	LAR_1657	-	transcription regulator
1658	 39.57	0	1863066..1864379	-	437	184154313	-	LAR_1658	-	proton/sodium-glutamate symport protein
1659	 39.87	0	1864629..1865255	+	208	184154314	-	LAR_1659	-	putative alkaline phosphatase
1660	 41.49	0	1866600..1867592	-	330	184154315	-	LAR_1660	-	galactose operon repressor
1661	 40.15	0	1867630..1869081	-	483	184154316	-	LAR_1661	-	galactose-1-phosphate uridylyltransferase
1662	 38.93	0	1869108..1870286	-	392	184154317	-	LAR_1662	-	galactokinase
1663	 41.59	0	1870481..1871449	+	322	184154318	-	LAR_1663	-	hypothetical protein
1664	 41.25	0	1871479..1872261	+	260	184154319	-	LAR_1664	-	putative protein-tyrosine phosphatase
1665	 40.24	0	1872298..1872804	+	168	184154320	-	LAR_1665	-	hypothetical protein
1666	 36.40	0	1872782..1873042	+	86	184154321	-	LAR_1666	-	hypothetical protein
1667	 41.28	0	1873238..1873564	-	108	184154322	-	LAR_1667	-	hypothetical protein
1668	 40.73	0	1873588..1874709	-	373	184154323	-	LAR_1668	-	hypothetical protein
1669	 37.37	0	1874843..1875313	+	156	184154324	-	LAR_1669	-	transcription elongation factor GreA
1670	 38.78	0	1875565..1876317	+	250	184154325	-	LAR_1670	-	hypothetical protein
1671	 38.08	0	1876511..1877353	-	280	184154326	-	LAR_1671	-	oxydoreductases
1672	 38.33	0	1877472..1878152	+	226	184154327	-	LAR_1672	-	two-component response regulator
1673	 36.12	0	1878121..1879125	+	334	184154328	-	LAR_1673	-	two-component sensor histidine kinase
1674	 41.80	0	1879238..1879993	+	251	184154329	-	LAR_1674	-	ABC transporter ATP-binding component
1675	 37.95	0	1879993..1881921	+	642	184154330	-	LAR_1675	-	ABC transporter permease and substrate binding components
1676	 40.22	0	1882162..1882989	+	275	184154331	-	LAR_1676	-	homoserine O-succinyltransferase
1677	 41.99	0	1882995..1883918	+	307	184154332	-	LAR_1677	-	cysteine synthase
1678	 37.95	0	1884135..1885628	-	497	184154333	-	LAR_1678	-	cardiolipinsynthase
1679	 39.62	0	1885704..1886864	-	386	184154334	-	LAR_1679	-	putative transport protein
1680	 39.57	0	1886966..1887478	-	170	184154335	-	LAR_1680	-	hypothetical protein
1681	 30.60	-2	1887475..1888095	-	206	184154336	-	LAR_1681	-	transcription regulator
1682	 41.21	0	1888239..1890143	-	634	184154337	-	LAR_1682	-	endopeptidase O
1683	 40.74	0	1890217..1890513	-	98	184154338	-	LAR_1683	-	hypothetical protein
1684	 41.45	0	1890514..1891806	-	430	184154339	-	LAR_1684	-	hypothetical protein
1685	 42.50	+1	1891803..1892948	-	381	184154340	-	LAR_1685	-	hypothetical protein
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.