IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.15   STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
106	 41.21	0	137601..138794	+	397	184152761	-	LAR_0106	-	phosphopentomutase
107	 40.49	0	138823..140121	+	432	184152762	-	LAR_0107	-	pyrimidine nucleoside phosphorylase
108	 39.52	0	140142..140852	+	236	184152763	-	LAR_0108	-	purine nucleoside phosphorylase
109	 37.62	0	140962..141894	+	310	184152764	-	LAR_0109	-	transcriptional regulator
110	 44.27	+1	141978..143120	+	380	184152765	-	LAR_0110	-	inosine-5-monophosphate dehydrogenase
111	 37.54	0	143301..143990	+	229	184152766	-	LAR_0111	-	two-component response regulator
112	 39.53	0	144022..145167	+	381	184152767	-	LAR_0112	-	two-component system histidine kinase
113	 38.39	0	145303..146211	+	302	184152768	-	LAR_0113	-	branched-chain amino acid transport protein
114	 35.65	-1	146214..146558	+	114	184152769	-	LAR_0114	-	hypothetical protein
115	 38.80	0	146654..147385	+	243	184152770	-	LAR_0115	-	transcription regulator
116	 35.71	-1	147360..147527	+	55	184152771	-	LAR_0116	-	hypothetical protein
117	 41.18	0	147872..148801	+	309	184152772	-	LAR_0117	-	aspartate carbamoyltransferase
118	 41.84	0	148815..150107	+	430	184152773	-	LAR_0118	-	dihydroorotase
119	 43.15	+1	150107..151033	+	308	184152774	-	LAR_0119	-	dihydroorotate dehydrogenase
120	 41.80	0	151030..151761	+	243	184152775	-	LAR_0120	-	orotidine-5'-phosphate decarboxylase
121	 42.21	0	151758..152399	+	213	184152776	-	LAR_0121	-	orotate phosphoribosyltransferase
122	 36.52	0	152471..153130	-	219	184152777	-	LAR_0122	-	hypothetical protein
123	 39.12	0	153255..154430	-	391	184152778	-	LAR_0123	-	cyclopropane-fatty-acyl-phospholipid synthase
124	 36.26	0	154602..155627	+	341	184152779	-	LAR_0124	-	hypothetical protein
125	 40.79	0	155804..157465	+	553	184152780	-	LAR_0125	-	formyltetrahydrofolate synthase
126	 43.69	+1	157659..159338	+	559	184152781	-	LAR_0126	-	acetolactate synthase
127	 39.75	0	159355..160071	+	238	184152782	-	LAR_0127	-	alpha-acetolactate decarboxylase
128	 43.00	+1	160256..160741	+	161	184152783	-	LAR_0128	-	phosphoribosylaminoimidazole carboxylase I
129	 41.42	0	160734..161858	+	374	184152784	-	LAR_0129	-	phosphoribosylaminoimidazole carboxylase II
130	 40.82	0	161930..163225	+	431	184152785	-	LAR_0130	-	adenylosuccinate lyase
131	 41.39	0	163449..164168	+	239	184152786	-	LAR_0131	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
132	 39.36	0	164169..164417	+	82	184152787	-	LAR_0132	-	phosphoribosylformylglycinamidine synthase PurS protein
133	 41.56	0	164418..165098	+	226	184152788	-	LAR_0133	-	phosphoribosylformylglycinamidine synthase I
134	 43.52	+1	165102..167330	+	742	184152789	-	LAR_0134	-	phosphoribosylformylglycinamidine synthase II
135	 41.79	0	167306..168760	+	484	184152790	-	LAR_0135	-	phosphoribosylpyrophosphate amidotransferase
136	 43.83	+1	168765..169802	+	345	184152791	-	LAR_0136	-	phosphoribosylaminoimidazole synthase
137	 42.06	0	169812..170384	+	190	184152792	-	LAR_0137	-	phosphoribosylglycinamide formyltransferase
138	 42.04	0	170388..171926	+	512	184152793	-	LAR_0138	-	phosphoribosylaminoimidazolecarboxamide/ formyltransferase; IMP cyclohydrolase
139	 42.94	+1	171942..173201	+	419	184152794	-	LAR_0139	-	phosphoribosylamine-glycine ligase
140	 40.90	0	173297..173983	+	228	184152795	-	LAR_0140	-	phosphoglycerate mutase
141	 39.24	0	174151..175200	+	349	184152796	-	LAR_0141	-	hypothetical protein
142	 39.67	0	175541..176803	+	420	184152797	-	LAR_0142	-	tyrosyl-tRNA synthase
143	 35.45	-1	182783..182971	+	62	184152798	-	LAR_0143	-	hypothetical protein
144	 39.22	0	182961..183317	+	118	184152799	-	LAR_0144	-	transposase
145	 40.00	0	183384..184913	+	509	184152800	-	LAR_0145	-	putative transposase
146	 42.00	0	186346..187314	-	322	184152801	-	LAR_0146	-	transposase
147	 44.77	+1	187514..188230	+	238	184152802	-	LAR_0147	-	hypothetical protein
148	 45.54	+1	188332..189765	+	477	184152803	-	LAR_0148	-	nicotinate phosphoribosyltransferase
149	 41.76	0	189781..190326	+	181	184152804	-	LAR_0149	-	pyrazinamidase/nicotinamidase
150	 39.54	0	190773..191771	+	332	184152805	-	LAR_0150	-	hypothetical protein
151	 37.92	0	191791..193143	+	450	184152806	-	LAR_0151	-	putative purine-cytosine permease
152	 37.16	0	193149..194036	+	295	184152807	-	LAR_0152	-	putative sugar kinase
153	 31.71	-2	194164..194409	+	81	184152808	-	LAR_0153	-	transcription regulator
154	 40.89	0	194828..196150	+	440	184152809	-	LAR_0154	-	putative transport protein
155	 40.89	0	196309..197049	-	246	184152810	-	LAR_0155	-	hypothetical protein
156	 37.72	0	197157..197384	+	75	184152811	-	LAR_0156	-	hypothetical protein
157	 38.10	0	197463..198113	+	216	184152812	-	LAR_0157	-	hypothetical protein
158	 39.74	0	198179..198412	-	77	184152813	-	LAR_0158	-	hypothetical protein
159	 42.21	0	198555..199973	-	472	184152814	-	LAR_0159	-	Na-H antiporter
160	 40.88	0	201951..202493	-	180	184152815	-	LAR_0160	-	hypothetical protein
161	 33.83	-1	202505..202906	-	133	184152816	-	LAR_0161	-	hypothetical protein
162	 40.86	0	203038..203808	+	256	184152817	-	LAR_0162	-	triosephosphate isomerase
163	 41.61	0	204086..205039	+	317	184152818	-	LAR_0163	-	oxidoreductase
164	 39.12	0	205039..205539	+	166	184152819	-	LAR_0164	-	hypothetical protein
165	 40.18	0	205560..208409	+	949	184152820	-	LAR_0165	-	putative helicase
166	 34.38	-1	208471..208758	+	95	184152821	-	LAR_0166	-	hypothetical protein
167	 41.08	0	208885..210240	-	451	184152822	-	LAR_0167	-	pyridine nucleotide-disulfide oxidoreductase
168	 37.07	0	210527..210847	+	106	184152823	-	LAR_0168	-	hypothetical protein
169	 40.71	0	210956..211660	+	234	184152824	-	LAR_0169	-	hypothetical protein
170	 39.05	0	211736..212470	+	244	184152825	-	LAR_0170	-	hypothetical protein
171	 42.68	+1	212654..214462	-	602	184152826	-	LAR_0171	-	cadmium-translocating P-type ATPase
172	 40.66	0	214566..215753	+	395	184152827	-	LAR_0172	-	phosphopentomutase
173	 41.05	0	215972..216826	-	284	184152828	-	LAR_0173	-	hypothetical protein
174	 42.59	+1	216829..217152	-	107	184152829	-	LAR_0174	-	hypothetical protein
175	 36.56	0	217432..218331	+	299	184152830	-	LAR_0175	-	glycine betaine/choline ABC transporter substrate bindingcomponent
176	 37.79	0	218413..219063	+	216	184152831	-	LAR_0176	-	glycine betaine/choline ABC transporter permease component
177	 39.69	0	219038..219808	+	256	184152832	-	LAR_0177	-	glycine betaine/choline ABC transporter ATP-binding component
178	 39.91	0	219801..220439	+	212	184152833	-	LAR_0178	-	glycine betaine/choline ABC transporter permease component
179	 38.69	0	220511..220939	+	142	184152834	-	LAR_0179	-	peptide methionine sulfoxide reductase
180	 37.92	0	221003..222355	-	450	184152835	-	LAR_0180	-	hypothetical protein
181	 39.53	0	222687..223832	-	381	184152836	-	LAR_0181	-	peptidase
182	 41.95	0	223851..224558	-	235	184152837	-	LAR_0182	-	ABC transporter permease component
183	 39.62	0	224533..225597	-	354	184152838	-	LAR_0183	-	ABC transporter ATP-binding component
184	 37.79	0	225610..226461	-	283	184152839	-	LAR_0184	-	hypothetical protein
185	 42.23	0	226982..227914	+	310	184152840	-	LAR_0185	-	L-2-hydroxyisocaproate dehydrogenase
186	 37.34	0	228061..229257	+	398	184152841	-	LAR_0186	-	multidrug transport protein
187	 41.74	0	229644..230285	-	213	184152842	-	LAR_0187	-	endonuclease III
188	 40.70	0	230577..232055	+	492	184152843	-	LAR_0188	-	amino acid transport protein
189	 41.79	0	232009..233379	+	456	184152844	-	LAR_0189	-	4-aminobutyrate aminotransferase
190	 40.94	0	233662..234831	+	389	184152845	-	LAR_0190	-	Na-H antiporter
191	 38.54	0	234841..237162	+	773	184152846	-	LAR_0191	-	DNA helicase
192	 37.61	0	237250..237693	+	147	184152847	-	LAR_0192	-	nucleoside-diphosphate kinase
193	 41.56	0	237745..238704	-	319	184152848	-	LAR_0193	-	hypothetical protein
194	 40.37	0	238982..240004	+	340	184152849	-	LAR_0194	-	tryptophanyl-tRNA synthase
195	 44.30	+1	240151..241089	+	312	184152850	-	LAR_0195	-	exopolyphosphatase
196	 44.26	+1	241082..242344	+	420	184152851	-	LAR_0196	-	hydroxymethylglutaryl-CoA reductase
197	 40.52	0	242337..243296	+	319	184152852	-	LAR_0197	-	hypothetical protein
198	 39.20	0	243302..244000	+	232	184152853	-	LAR_0198	-	transcription regulator
199	 34.13	-1	244055..244180	-	41	184152854	-	LAR_0199	-	hypothetical protein
200	 40.99	0	244449..245297	+	282	184152855	-	LAR_0200	-	hypothetical protein
201	 39.50	0	245375..247402	+	675	184152856	-	LAR_0201	-	methionyl-tRNA synthase
202	 41.60	0	247428..248213	+	261	184152857	-	LAR_0202	-	DNase
203	 40.04	0	248210..248776	+	188	184152858	-	LAR_0203	-	hypothetical protein
204	 40.04	0	248769..249662	+	297	184152859	-	LAR_0204	-	dimethyladenosine transferase
205	 36.63	0	249753..249995	+	80	184152860	-	LAR_0205	-	hypothetical protein
39.15	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.