IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.15   STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1454	 38.35	0	1641691..1643025	-	444	184154109	-	LAR_1454	-	putative Xaa-His dipeptidase
1455	 38.54	0	1643038..1644555	-	505	184154110	-	LAR_1455	-	hypothetical protein
1456	 38.41	0	1644690..1645634	+	314	184154111	-	LAR_1456	-	hypothetical protein
1457	 39.47	0	1647593..1648309	-	238	184154112	-	LAR_1457	-	putative lipase/esterase
1458	 40.00	0	1649600..1650139	-	179	184154113	-	LAR_1458	-	hypothetical protein
1459	 43.72	+1	1650334..1651248	-	304	184154114	-	LAR_1459	-	cysteine synthase
1460	 41.26	0	1651698..1652630	+	310	184154115	-	LAR_1460	-	ferrochelatase
1461	 44.29	+1	1652633..1653937	+	434	184154116	-	LAR_1461	-	cation transport protein
1462	 40.29	0	1654204..1654749	-	181	184154117	-	LAR_1462	-	hypothetical protein
1463	 38.71	0	1654767..1655435	-	222	184154118	-	LAR_1463	-	potassium uptake protein
1464	 37.87	0	1655428..1656771	-	447	184154119	-	LAR_1464	-	potassium uptake protein
1465	 41.91	0	1656926..1658698	+	590	184154120	-	LAR_1465	-	hypothetical protein
1466	 42.26	0	1658776..1659537	+	253	184154121	-	LAR_1466	-	nitroreductase
1467	 40.53	0	1659534..1660673	-	379	184154122	-	LAR_1467	-	endoglucanase
1468	 38.76	0	1660688..1661995	-	435	184154123	-	LAR_1468	-	glycosyltransferase
1469	 36.57	0	1662138..1663001	-	287	184154124	-	LAR_1469	-	hypothetical protein
1470	 38.72	0	1664174..1664878	-	234	184154125	-	LAR_1470	-	phosphate uptake regulator
1471	 40.48	0	1664889..1665644	-	251	184154126	-	LAR_1471	-	phosphate ABC transporter ATP-binding component
1472	 41.50	0	1665655..1666536	-	293	184154127	-	LAR_1472	-	phosphate ABC transporter permease component
1473	 44.33	+1	1666536..1667435	-	299	184154128	-	LAR_1473	-	phosphate ABC transporter permease component
1474	 39.98	0	1667440..1668312	-	290	184154129	-	LAR_1474	-	phosphate ABC transporter substrate binding component
1475	 39.80	0	1668438..1669148	+	236	184154130	-	LAR_1475	-	two-component response regulator
1476	 42.75	+1	1669426..1669935	+	169	184154131	-	LAR_1476	-	putative transposase
1477	 39.84	0	1670773..1671786	-	337	184154132	-	LAR_1477	-	hypothetical protein
1478	 40.68	0	1671902..1672432	+	176	184154133	-	LAR_1478	-	hypothetical protein
1479	 38.70	0	1673536..1674429	-	297	184154134	-	LAR_1479	-	putative transcription regulator
1480	 41.37	0	1674558..1675664	+	368	184154135	-	LAR_1480	-	alcohol dehydrogenase
1481	 42.58	+1	1675714..1676070	+	118	184154136	-	LAR_1481	-	phosphatase
1482	 40.90	0	1676194..1677237	-	347	184154137	-	LAR_1482	-	hypothetical protein
1483	 39.43	0	1677429..1677986	-	185	184154138	-	LAR_1483	-	translation elongation factor P
1484	 44.08	+1	1678246..1679427	-	393	184154139	-	LAR_1484	-	hypothetical protein
1485	 39.24	0	1681229..1682092	-	287	184154140	-	LAR_1485	-	ABC transporter substrate binding component
1486	 40.88	0	1682208..1682684	-	158	184154141	-	LAR_1486	-	autoinducer-2 production protein LuxS
1487	 40.76	0	1683072..1683758	-	228	184154142	-	LAR_1487	-	hypothetical protein
1488	 39.58	0	1683782..1684405	-	207	184154143	-	LAR_1488	-	hypothetical protein
1489	 45.55	+1	1684702..1685757	-	351	184154144	-	LAR_1489	-	alcohol dehydrogenase
1490	 39.11	0	1687464..1688918	+	484	184154145	-	LAR_1490	-	transposase
1491	 35.42	-1	1689133..1690380	+	415	184154146	-	LAR_1491	-	transposase
1492	 50.21	+2	1690448..1690690	-	80	184154147	-	LAR_1492	-	hypothetical protein
1493	 39.97	0	1691900..1692502	-	200	184154148	-	LAR_1493	-	hypothetical protein
1494	 42.39	+1	1692983..1694152	+	389	184154149	-	LAR_1494	-	purine-cytosine transport protein
1495	 36.40	0	1694226..1694747	-	173	184154150	-	LAR_1495	-	putative acetyltransferase
1496	 40.00	0	1694963..1695427	-	154	184154151	-	LAR_1496	-	hypothetical protein
1497	 41.10	0	1695440..1696507	-	355	184154152	-	LAR_1497	-	hypothetical protein
1498	 37.73	0	1696600..1697760	-	386	184154153	-	LAR_1498	-	putative transport protein
1499	 44.72	+1	1697824..1698315	+	163	184154154	-	LAR_1499	-	hypothetical protein
1500	 43.99	+1	1698507..1699379	-	290	184154155	-	LAR_1500	-	putative rRNA methylase
1501	 41.40	0	1699450..1700688	-	412	184154156	-	LAR_1501	-	oxalate-formate antiporter
1502	 32.92	-1	1701081..1702298	-	405	184154157	-	LAR_1502	-	phage integrase
1503	 36.11	0	1702276..1702491	-	71	184154158	-	LAR_1503	-	hypothetical protein
1504	 32.21	-2	1702493..1702759	-	88	184154159	-	LAR_1504	-	hypothetical protein
1505	 35.03	-1	1702759..1704825	-	688	184154160	-	LAR_1505	-	hypothetical protein
1506	 34.00	-1	1704792..1705697	-	301	184154161	-	LAR_1506	-	hypothetical protein
1507	 47.68	+2	1706856..1708625	-	589	184154162	-	LAR_1507	-	neopullulanase
1508	 46.92	+2	1708622..1709968	-	448	184154163	-	LAR_1508	-	putative sugar transport protein
1509	 27.99	-2	1710477..1711094	+	205	184154164	-	LAR_1509	-	hypothetical protein
1510	 41.83	0	1712229..1713782	-	517	184154165	-	LAR_1510	-	GMP synthase
1511	 38.82	0	1714285..1715487	+	400	184154166	-	LAR_1511	-	hypothetical protein
1512	 40.58	0	1715484..1716407	-	307	184154167	-	LAR_1512	-	pantothenate kinase
1513	 37.48	0	1716598..1718694	-	698	184154168	-	LAR_1513	-	phosphoglycerol transferase
1514	 41.26	0	1718905..1719774	+	289	184154169	-	LAR_1514	-	hypothetical protein
1515	 37.33	0	1720222..1721397	-	391	184154170	-	LAR_1515	-	transposase
1516	 34.31	-1	1721397..1721807	-	136	184154171	-	LAR_1516	-	transposase
1517	 38.53	0	1721949..1724255	-	768	184154172	-	LAR_1517	-	DNA helicase
1518	 39.63	0	1724475..1725125	+	216	184154173	-	LAR_1518	-	hypothetical protein
1519	 44.80	+1	1725199..1725852	+	217	184154174	-	LAR_1519	-	phosphoglycerate mutase
1520	 39.20	0	1725882..1727159	+	425	184154175	-	LAR_1520	-	GTPases
1521	 44.84	+1	1727206..1727457	-	83	184154176	-	LAR_1521	-	hypothetical protein
1522	 35.86	-1	1727460..1727657	-	65	184154177	-	LAR_1522	-	hypothetical protein
1523	 38.87	0	1727876..1728868	-	330	184154178	-	LAR_1523	-	D-lactate dehydrogenase
1524	 42.75	+1	1729000..1731867	-	955	184154179	-	LAR_1524	-	hypothetical protein
1525	 35.20	-1	1731904..1732440	-	178	184154180	-	LAR_1525	-	putative transcriptional regulator
1526	 38.81	0	1733055..1733894	-	279	184154181	-	LAR_1526	-	hypothetical protein
1527	 42.29	0	1733913..1734392	-	159	184154182	-	LAR_1527	-	hypothetical protein
1528	 35.39	-1	1734452..1734889	-	145	184154183	-	LAR_1528	-	transcriptional regulator
1529	 43.28	+1	1734929..1735501	-	190	184154184	-	LAR_1529	-	guanylate kinase
1530	 36.50	0	1735508..1735918	-	136	184154185	-	LAR_1530	-	hypothetical protein
1531	 42.03	0	1736047..1737438	+	463	184154186	-	LAR_1531	-	amino acid transport protein
1532	 37.78	0	1737614..1738918	+	434	184154187	-	LAR_1532	-	putative transport protein
1533	 35.93	0	1738999..1740387	-	462	184154188	-	LAR_1533	-	hypothetical protein
1534	 39.48	0	1740409..1741482	-	357	184154189	-	LAR_1534	-	spermidine/putrescine ABC transporter substrate-binding component
1535	 41.39	0	1741479..1742297	-	272	184154190	-	LAR_1535	-	spermidine/putrescine ABC transporter permease component
1536	 39.53	0	1742297..1743103	-	268	184154191	-	LAR_1536	-	spermidine/putrescine ABC transporter permease component
1537	 40.29	0	1743103..1744194	-	363	184154192	-	LAR_1537	-	spermidine/putrescine ABC transporter ATP-binding component
1538	 43.03	+1	1744334..1746736	+	800	184154193	-	LAR_1538	-	Xaa-Pro dipeptidyl-peptidase
1539	 38.60	0	1746837..1747748	+	303	184154194	-	LAR_1539	-	prolyl aminopeptidase
1540	 43.08	+1	1747930..1750647	+	905	184154195	-	LAR_1540	-	cation transport ATPase
1541	 36.75	0	1750790..1751257	+	155	184154196	-	LAR_1541	-	hypothetical protein
1542	 40.26	0	1751338..1752738	-	466	184154197	-	LAR_1542	-	amino acid transport protein
1543	 41.82	0	1752879..1753526	+	215	184154198	-	LAR_1543	-	putative phosphatase
1544	 38.22	0	1753758..1753982	-	74	184154199	-	LAR_1544	-	hypothetical protein
1545	 41.52	0	1755028..1755699	+	223	184154200	-	LAR_1545	-	zinc/iron ABC transporter ATP-binding component
1546	 47.55	+2	1755969..1756967	-	332	184154201	-	LAR_1546	-	thioredoxin reductase
1547	 41.33	0	1757132..1758094	+	320	184154202	-	LAR_1547	-	purine nucleosidase
1548	 44.18	+1	1758386..1759141	+	251	184154203	-	LAR_1548	-	alcohol dehydrogenase
1549	 41.09	0	1759194..1759979	-	261	184154204	-	LAR_1549	-	transport protein
1550	 42.25	0	1760246..1760806	+	186	184154205	-	LAR_1550	-	hypothetical protein
1551	 39.55	0	1760811..1762193	+	460	184154206	-	LAR_1551	-	cobalt ABC transporter ATP-binding component
1552	 41.28	0	1762183..1762836	+	217	184154207	-	LAR_1552	-	cobalt ABC transporter permease component
1553	 40.16	0	1763309..1765270	+	653	184154208	-	LAR_1553	-	Na-H antiporter
39.15	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.