IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.15   STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1236	 36.38	0	1390180..1390704	+	174	184153891	-	LAR_1236	-	hypothetical protein
1237	 38.96	0	1390728..1391171	-	147	184153892	-	LAR_1237	-	hypothetical protein
1238	 40.98	0	1391171..1392673	-	500	184153893	-	LAR_1238	-	DNA-damage repair protein
1239	 36.81	0	1392800..1393231	-	143	184153894	-	LAR_1239	-	small heat shock protein
1240	 41.46	0	1393364..1394212	+	282	184153895	-	LAR_1240	-	putative oxidoreductase
1241	 40.49	0	1394310..1395608	-	432	184153896	-	LAR_1241	-	putative oxidoreductase
1242	 41.95	0	1395601..1396842	-	413	184153897	-	LAR_1242	-	putative oxidoreductase
1243	 38.32	0	1397138..1397899	+	253	184153898	-	LAR_1243	-	exodeoxyribonuclease III
1244	 42.09	0	1398021..1398728	-	235	184153899	-	LAR_1244	-	cell-wall hydrolase
1245	 37.27	0	1399057..1400757	-	566	184153900	-	LAR_1245	-	hypothetical protein
1246	 43.04	+1	1400912..1401673	-	253	184153901	-	LAR_1246	-	cell-wall hydrolase
1247	 43.06	+1	1402058..1402951	-	297	184153902	-	LAR_1247	-	hypothetical protein
1248	 41.62	0	1402960..1403538	-	192	184153903	-	LAR_1248	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1249	 40.45	0	1403604..1405838	-	744	184153904	-	LAR_1249	-	anaerobic ribonucleoside-triphosphate reductase
1250	 39.70	0	1406244..1407641	+	465	184153905	-	LAR_1250	-	multidrug transport protein
1251	 38.38	0	1407679..1408233	-	184	184153906	-	LAR_1251	-	hypothetical protein
1252	 36.00	0	1415134..1416147	-	337	184153907	-	LAR_1252	-	hypothetical protein
1253	 39.83	0	1416147..1417178	-	343	184153908	-	LAR_1253	-	glycosyltransferase
1254	 40.31	0	1417178..1418395	-	405	184153909	-	LAR_1254	-	glycosyltransferase
1255	 44.08	+1	1418629..1420359	-	576	184153910	-	LAR_1255	-	phosphotransferase system enzyme I
1256	 38.58	0	1420359..1420625	-	88	184153911	-	LAR_1256	-	phosphocarrier protein HPr
1257	 42.00	0	1421208..1423412	+	734	184153912	-	LAR_1257	-	ATP-dependent Clp protease ATP-binding subunit ClpE
1258	 41.87	0	1423463..1424071	-	202	184153913	-	LAR_1258	-	hypothetical protein
1259	 38.50	0	1424212..1424946	+	244	184153914	-	LAR_1259	-	hypothetical protein
1260	 37.55	0	1425077..1425763	-	228	184153915	-	LAR_1260	-	hypothetical protein
1261	 38.19	0	1425763..1426626	-	287	184153916	-	LAR_1261	-	ABC transporter ATP-binding component
1262	 38.54	0	1426607..1426990	-	127	184153917	-	LAR_1262	-	transcription regulator
1263	 38.56	0	1427154..1428128	-	324	184153918	-	LAR_1263	-	hypothetical protein
1264	 39.80	0	1428062..1429360	-	432	184153919	-	LAR_1264	-	hypothetical protein
1265	 36.22	0	1430070..1430624	-	184	184153920	-	LAR_1265	-	hypothetical protein
1266	 39.84	0	1435391..1436035	-	214	184153921	-	LAR_1267	-	putative transposase
1267	 42.86	+1	1436021..1436650	+	209	184153922	-	LAR_1266	-	transposase
1268	 36.42	0	1437122..1441588	-	1488	184153923	-	LAR_1268	-	dextransucrase
1269	 32.88	-1	1441744..1442625	-	293	184153924	-	LAR_1269	-	hypothetical protein
1270	 43.01	+1	1442776..1444149	-	457	184153925	-	LAR_1270	-	reverse transcriptase/maturase family protein
1271	 36.17	0	1444801..1445259	+	152	184153926	-	LAR_1271	-	transposase
1272	 41.95	0	1445432..1447009	-	525	184153927	-	LAR_1272	-	peptide chain release factor 3
1273	 41.31	0	1447196..1448662	+	488	184153928	-	LAR_1273	-	putative transcription regulator
1274	 30.40	-2	1448706..1450274	-	522	184153929	-	LAR_1274	-	hypothetical protein
1275	 35.20	-1	1450258..1451385	-	375	184153930	-	LAR_1275	-	transport protein
1276	 37.90	0	1451494..1453092	-	532	184153931	-	LAR_1276	-	hypothetical protein
1277	 40.66	0	1453276..1454586	-	436	184153932	-	LAR_1277	-	hypothetical protein
1278	 37.24	0	1455617..1456333	+	238	184153933	-	LAR_1278	-	transposase
1279	 36.80	0	1457197..1457946	-	249	184153934	-	LAR_1279	-	putative helper protein
1280	 35.95	0	1457936..1459159	-	407	184153935	-	LAR_1280	-	transposase
1281	 28.10	-2	1459664..1460638	-	324	184153936	-	LAR_1281	-	hypothetical protein
1282	 36.67	0	1460751..1461320	-	189	184153937	-	LAR_1282	-	hypothetical protein
1283	 40.09	0	1461388..1462704	-	438	184153938	-	LAR_1283	-	hypothetical protein
1284	 37.27	0	1462930..1464528	-	532	184153939	-	LAR_1284	-	putative autolysin
1285	 36.17	0	1464854..1465312	-	152	184153940	-	LAR_1285	-	transposase
1286	 36.38	0	1465521..1466999	-	492	184153941	-	LAR_1286	-	muramidase
1287	 26.12	-2	1467111..1468178	-	355	184153942	-	LAR_1287	-	hypothetical protein
1288	 33.24	-1	1468190..1469206	-	338	184153943	-	LAR_1288	-	hypothetical protein
1289	 31.05	-2	1469221..1470270	-	349	184153944	-	LAR_1289	-	lipopolysaccharide 1,6-galactosyltransferase
1290	 34.04	-1	1470287..1471705	-	472	184153945	-	LAR_1290	-	hypothetical protein
1291	 34.44	-1	1471908..1472537	-	209	184153946	-	LAR_1291	-	hypothetical protein
1292	 30.41	-2	1472534..1473730	-	398	184153947	-	LAR_1292	-	hypothetical protein
1293	 38.96	0	1473948..1475066	-	372	184153948	-	LAR_1293	-	UDP-galactopyranose mutase
1294	 38.66	0	1475092..1475748	-	218	184153949	-	LAR_1294	-	galactosyltransferase
1295	 40.97	0	1475751..1476680	-	309	184153950	-	LAR_1295	-	glycosyltransferase
1296	 38.80	0	1476698..1477465	-	255	184153951	-	LAR_1296	-	hypothetical protein
1297	 42.89	+1	1477540..1478334	-	264	184153952	-	LAR_1297	-	hypothetical protein
1298	 37.96	0	1478436..1478651	+	71	184153953	-	LAR_1298	-	hypothetical protein
1299	 39.04	0	1478673..1478900	+	75	184153954	-	LAR_1299	-	hypothetical protein
1300	 41.75	0	1478951..1479841	-	296	184153955	-	LAR_1300	-	hypothetical protein
1301	 40.11	0	1480173..1481678	-	501	184153956	-	LAR_1301	-	amino acid transport protein
1302	 43.04	+1	1482009..1483430	+	473	184153957	-	LAR_1302	-	arginine-ornithine antiporter
1303	 43.14	+1	1483446..1484567	+	373	184153958	-	LAR_1303	-	aminotransferase
1304	 42.77	+1	1484630..1485487	-	285	184153959	-	LAR_1304	-	methionine aminopeptidase
1305	 42.27	0	1485601..1486059	+	152	184153960	-	LAR_1305	-	flavodoxin
1306	 33.56	-1	1486052..1486489	+	145	184153961	-	LAR_1306	-	teichoic acid glycosylation protein
1307	 36.83	0	1486584..1486898	+	104	184153962	-	LAR_1307	-	hypothetical protein
1308	 40.46	0	1487096..1488217	-	373	184153963	-	LAR_1308	-	UDP-N-acetylglucosamine 2-epimerase
1309	 43.01	+1	1488429..1489730	-	433	184153964	-	LAR_1309	-	ATP-dependent RNA helicase
1310	 38.14	0	1489742..1490761	-	339	184153965	-	LAR_1310	-	putative oxidoreductase
1311	 39.12	0	1490922..1491284	+	120	184153966	-	LAR_1311	-	hypothetical protein
1312	 40.65	0	1491316..1491903	-	195	184153967	-	LAR_1312	-	hypothetical protein
1313	 41.56	0	1491908..1492831	-	307	184153968	-	LAR_1313	-	L-2-hydroxyisocaproate dehydrogenase
1314	 37.97	0	1492938..1494467	-	509	184153969	-	LAR_1314	-	glutamate-cysteine ligase
1315	 35.76	-1	1494604..1495635	-	343	184153970	-	LAR_1315	-	hypothetical protein
1316	 36.84	0	1495625..1496080	-	151	184153971	-	LAR_1316	-	putative acetyltransferase
1317	 38.42	0	1496217..1496924	+	235	184153972	-	LAR_1317	-	hypothetical protein
1318	 31.89	-2	1496976..1497530	-	184	184153973	-	LAR_1318	-	hypothetical protein
1319	 33.92	-1	1497591..1498103	-	170	184153974	-	LAR_1319	-	putative acetyltransferase
1320	 34.71	-1	1498250..1498684	+	144	184153975	-	LAR_1320	-	hypothetical protein
1321	 34.45	-1	1498681..1499127	+	148	184153976	-	LAR_1321	-	hypothetical protein
1322	 36.47	0	1499136..1500059	-	307	184153977	-	LAR_1322	-	putative autolysin
1323	 37.47	0	1501972..1502430	-	152	184153978	-	LAR_1323	-	hypothetical protein
1324	 38.07	0	1502445..1503098	-	217	184153979	-	LAR_1324	-	nitroreductase
1325	 37.96	0	1503182..1503721	-	179	184153980	-	LAR_1325	-	hypothetical protein
1326	 36.02	0	1503792..1504274	-	160	184153981	-	LAR_1326	-	acetyltransferase
1327	 41.03	0	1504419..1505744	-	441	184153982	-	LAR_1327	-	hypothetical protein
1328	 40.36	0	1505976..1507157	+	393	184153983	-	LAR_1328	-	ammonium transport protein
1329	 30.61	-2	1509573..1511738	-	721	184153984	-	LAR_1329	-	hypothetical protein
1330	 32.07	-2	1511719..1512351	-	210	184153985	-	LAR_1330	-	hypothetical protein
1331	 35.21	-1	1513012..1513863	+	283	184153986	-	LAR_1331	-	ABC transporter ATP-binding component
1332	 34.51	-1	1513865..1514716	+	283	184153987	-	LAR_1332	-	hypothetical protein
1333	 31.79	-2	1514719..1515171	+	150	184153988	-	LAR_1333	-	hypothetical protein
1334	 33.07	-1	1515173..1515559	+	128	184153989	-	LAR_1334	-	hypothetical protein
1335	 39.20	0	1515981..1516952	-	323	184153990	-	LAR_1335	-	hypothetical protein
39.15	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.