IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1159	 38.82	0	1315137..1316630	-	497	184153814	-	LAR_1159	-	amino acid transport protein
1160	 39.84	0	1316819..1318294	-	491	184153815	-	LAR_1160	-	two-component system histidine kinase
1161	 39.30	0	1318307..1318993	-	228	184153816	-	LAR_1161	-	two-component response regulator
1162	 47.22	+2	1319218..1319397	-	59	184153817	-	LAR_1162	-	50S ribosomal protein L32
1163	 40.32	0	1319452..1320009	-	185	184153818	-	LAR_1163	-	hypothetical protein
1164	 41.17	0	1320139..1321095	-	318	184153819	-	LAR_1164	-	hypothetical protein
1165	 46.15	+2	1321079..1321273	-	64	184153820	-	LAR_1165	-	hypothetical protein
1166	 39.41	0	1321285..1322025	-	246	184153821	-	LAR_1166	-	hypothetical protein
1167	 40.62	0	1322025..1322381	-	118	184153822	-	LAR_1167	-	hypothetical protein
1168	 40.98	0	1322381..1322995	-	204	184153823	-	LAR_1168	-	hypothetical protein
1169	 42.33	0	1322988..1323632	-	214	184153824	-	LAR_1169	-	nicotinate-nucleotide adenylyltransferase
1170	 36.54	0	1323654..1323965	-	103	184153825	-	LAR_1170	-	hypothetical protein
1171	 40.87	0	1323989..1325116	-	375	184153826	-	LAR_1171	-	GTPase
1172	 38.04	0	1325109..1325639	-	176	184153827	-	LAR_1172	-	hydrolase
1173	 43.22	+1	1325793..1326146	-	117	184153828	-	LAR_1173	-	50S ribosomal protein L20
1174	 42.93	+1	1326191..1326388	-	65	184153829	-	LAR_1174	-	50S ribosomal protein L35
1175	 43.08	+1	1326411..1326923	-	170	184153830	-	LAR_1175	-	translation initiation factor IF-3
1176	 38.00	0	1327149..1328090	-	313	184153831	-	LAR_1176	-	primosomal protein DnaI
1177	 40.86	0	1328111..1329466	-	451	184153832	-	LAR_1177	-	DNA replication protein DnaB
1178	 43.66	+1	1329484..1329948	-	154	184153833	-	LAR_1178	-	hypothetical protein
1179	 42.67	+1	1329994..1330593	-	199	184153834	-	LAR_1179	-	dephospho-CoA kinase
1180	 42.24	0	1330597..1331427	-	276	184153835	-	LAR_1180	-	formamidopyrimidine-DNA glycosylase
1181	 41.24	0	1331442..1334108	-	888	184153836	-	LAR_1181	-	DNA-directed DNA polymerase I
1182	 42.67	+1	1334231..1334905	+	224	184153837	-	LAR_1182	-	hypothetical protein
1183	 43.10	+1	1334964..1335680	-	238	184153838	-	LAR_1183	-	hypothetical protein
1184	 42.01	0	1335769..1337094	-	441	184153839	-	LAR_1184	-	ligase
1185	 41.32	0	1337200..1337850	-	216	184153840	-	LAR_1185	-	hypothetical protein
1186	 34.55	-1	1337976..1338305	-	109	184153841	-	LAR_1186	-	thioredoxin
1187	 40.71	0	1338461..1338799	+	112	184153842	-	LAR_1187	-	hypothetical protein
1188	 44.19	+1	1338851..1339771	+	306	184153843	-	LAR_1188	-	glutaminase
1189	 40.06	0	1339940..1340920	+	326	184153844	-	LAR_1189	-	putative oxidoreductase
1190	 44.51	+1	1340959..1342461	+	500	184153845	-	LAR_1190	-	poly(glycerol-phosphate) alpha-glucosyltransferase
1191	 42.81	+1	1342526..1343908	-	460	184153846	-	LAR_1191	-	reverse transcriptase/maturase family protein
1192	 41.51	0	1344416..1346653	-	745	184153847	-	LAR_1192	-	hypothetical protein
1193	 35.97	0	1347096..1348082	-	328	184153848	-	LAR_1193	-	hypothetical protein
1194	 43.61	+1	1348314..1348955	-	213	184153849	-	LAR_1194	-	putative methyl transferase
1195	 47.22	+2	1348968..1350170	-	400	184153850	-	LAR_1195	-	ABC transporter permease component
1196	 45.39	+1	1350163..1350900	-	245	184153851	-	LAR_1196	-	ABC transporter ATP-binding component
1197	 41.84	0	1351037..1351471	+	144	184153852	-	LAR_1197	-	histidine triad protein
1198	 41.56	0	1351474..1351704	+	76	184153853	-	LAR_1198	-	hypothetical protein
1199	 40.47	0	1351881..1352819	-	312	184153854	-	LAR_1199	-	peptidylprolyl isomerase
1200	 44.65	+1	1352934..1355426	-	830	184153855	-	LAR_1200	-	hypothetical protein
1201	 42.11	0	1355430..1356614	-	394	184153856	-	LAR_1201	-	DNA repair exonuclease
1202	 37.90	0	1356694..1357065	-	123	184153857	-	LAR_1202	-	hypothetical protein
1203	 44.04	+1	1357114..1359279	-	721	184153858	-	LAR_1203	-	penicillin-binding protein 2A
1204	 42.39	+1	1359447..1361135	-	562	184153859	-	LAR_1204	-	arginyl-tRNA synthase
1205	 41.79	0	1361496..1362311	+	271	184153860	-	LAR_1205	-	phosphomethylpyrimidine kinase
1206	 42.49	+1	1362324..1363262	+	312	184153861	-	LAR_1206	-	L-lactate dehydrogenase
1207	 36.26	0	1363448..1363720	-	90	184153862	-	LAR_1207	-	hypothetical protein
1208	 42.19	0	1364163..1364975	-	270	184153863	-	LAR_1208	-	dihydropteroate synthase
1209	 40.82	0	1365328..1365915	-	195	184153864	-	LAR_1209	-	xanthosine triphosphate pyrophosphatase
1210	 40.32	0	1365905..1367164	-	419	184153865	-	LAR_1210	-	folylpolyglutamate synthase
1211	 40.59	0	1367151..1367729	-	192	184153866	-	LAR_1211	-	GTP cyclohydrolase I
1212	 39.38	0	1367711..1368223	-	170	184153867	-	LAR_1212	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
1213	 38.10	0	1368226..1368561	-	111	184153868	-	LAR_1213	-	dihydroneopterin aldolase
1214	 40.15	0	1368649..1369044	-	131	184153869	-	LAR_1214	-	hypothetical protein
1215	 39.43	0	1369287..1369565	-	92	184153870	-	LAR_1215	-	hypothetical protein
1216	 38.50	0	1369909..1370586	-	225	184153871	-	LAR_1216	-	hypothetical protein
1217	 36.99	0	1370570..1370815	-	81	184153872	-	LAR_1217	-	hypothetical protein
1218	 40.91	0	1370932..1371855	-	307	184153873	-	LAR_1218	-	ribokinase
1219	 37.95	0	1371912..1372928	-	338	184153874	-	LAR_1219	-	ribose operon repressor
1220	 37.27	0	1373010..1373618	-	202	184153875	-	LAR_1220	-	hypothetical protein
1221	 37.12	0	1373834..1374466	+	210	184153876	-	LAR_1221	-	deoxyguanosine kinase
1222	 41.07	0	1374501..1375547	-	348	184153877	-	LAR_1222	-	N-acetylmuramoyl-L-alanine amidase
1223	 36.26	0	1375637..1376149	-	170	184153878	-	LAR_1223	-	hypothetical protein
1224	 42.88	+1	1376175..1377578	-	467	184153879	-	LAR_1224	-	dipeptidase
1225	 45.06	+1	1377667..1378527	+	286	184153880	-	LAR_1225	-	hypothetical protein
1226	 40.39	0	1378591..1380177	-	528	184153881	-	LAR_1226	-	polysaccharide biosynthesis family protein
1227	 38.64	0	1380355..1380618	-	87	184153882	-	LAR_1227	-	hypothetical protein
1228	 42.87	+1	1380683..1383103	-	806	184153883	-	LAR_1228	-	leucyl-tRNA synthase
1229	 42.59	+1	1383425..1384612	-	395	184153884	-	LAR_1229	-	S-adenosylmethionine synthase
1230	 38.33	0	1384773..1385312	-	179	184153885	-	LAR_1230	-	3-methyladenine-DNA glycosylase I
1231	 39.86	0	1385735..1387174	-	479	184153886	-	LAR_1231	-	multidrug transport protein
1232	 37.94	0	1387298..1387753	+	151	184153887	-	LAR_1232	-	ferric uptake regulator
1233	 39.79	0	1387785..1389131	-	448	184153888	-	LAR_1233	-	amino acid transport protein
1234	 35.63	-1	1389267..1389833	+	188	184153889	-	LAR_1234	-	hypothetical protein
1235	 34.52	-1	1389845..1390012	+	55	184153890	-	LAR_1235	-	hypothetical protein
1236	 36.38	0	1390180..1390704	+	174	184153891	-	LAR_1236	-	hypothetical protein
1237	 38.96	0	1390728..1391171	-	147	184153892	-	LAR_1237	-	hypothetical protein
1238	 40.98	0	1391171..1392673	-	500	184153893	-	LAR_1238	-	DNA-damage repair protein
1239	 36.81	0	1392800..1393231	-	143	184153894	-	LAR_1239	-	small heat shock protein
1240	 41.46	0	1393364..1394212	+	282	184153895	-	LAR_1240	-	putative oxidoreductase
1241	 40.49	0	1394310..1395608	-	432	184153896	-	LAR_1241	-	putative oxidoreductase
1242	 41.95	0	1395601..1396842	-	413	184153897	-	LAR_1242	-	putative oxidoreductase
1243	 38.32	0	1397138..1397899	+	253	184153898	-	LAR_1243	-	exodeoxyribonuclease III
1244	 42.09	0	1398021..1398728	-	235	184153899	-	LAR_1244	-	cell-wall hydrolase
1245	 37.27	0	1399057..1400757	-	566	184153900	-	LAR_1245	-	hypothetical protein
1246	 43.04	+1	1400912..1401673	-	253	184153901	-	LAR_1246	-	cell-wall hydrolase
1247	 43.06	+1	1402058..1402951	-	297	184153902	-	LAR_1247	-	hypothetical protein
1248	 41.62	0	1402960..1403538	-	192	184153903	-	LAR_1248	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1249	 40.45	0	1403604..1405838	-	744	184153904	-	LAR_1249	-	anaerobic ribonucleoside-triphosphate reductase
1250	 39.70	0	1406244..1407641	+	465	184153905	-	LAR_1250	-	multidrug transport protein
1251	 38.38	0	1407679..1408233	-	184	184153906	-	LAR_1251	-	hypothetical protein
1252	 36.00	0	1415134..1416147	-	337	184153907	-	LAR_1252	-	hypothetical protein
1253	 39.83	0	1416147..1417178	-	343	184153908	-	LAR_1253	-	glycosyltransferase
1254	 40.31	0	1417178..1418395	-	405	184153909	-	LAR_1254	-	glycosyltransferase
1255	 44.08	+1	1418629..1420359	-	576	184153910	-	LAR_1255	-	phosphotransferase system enzyme I
1256	 38.58	0	1420359..1420625	-	88	184153911	-	LAR_1256	-	phosphocarrier protein HPr
1257	 42.00	0	1421208..1423412	+	734	184153912	-	LAR_1257	-	ATP-dependent Clp protease ATP-binding subunit ClpE
1258	 41.87	0	1423463..1424071	-	202	184153913	-	LAR_1258	-	hypothetical protein
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.