IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.15   STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
63	 41.77	0	80980..81477	-	165	184152718	-	LAR_0063	-	hypothetical protein
64	 40.30	0	81746..83095	+	449	184152719	-	LAR_0064	-	NADH oxidase
65	 42.67	+1	83155..84129	-	324	184152720	-	LAR_0065	-	GMP reductase
66	 42.11	0	84325..85623	+	432	184152721	-	LAR_0066	-	adenylosuccinate synthase
67	 39.57	0	85734..86519	+	261	184152722	-	LAR_0067	-	hypothetical protein
68	 41.53	0	86685..87221	+	178	184152723	-	LAR_0068	-	pyrimidine operon regulator
69	 38.82	0	87975..89231	-	418	184152724	-	LAR_0069	-	transposase
70	 37.85	0	89297..89761	+	154	184152725	-	LAR_0070	-	transposase
71	 40.82	0	89886..90620	+	244	184152726	-	LAR_0071	-	hypothetical protein
72	 38.71	0	90626..92020	+	464	184152727	-	LAR_0072	-	amino acid transport protein
73	 25.76	-2	92492..92689	+	65	184152728	-	LAR_0073	-	hypothetical protein
74	 32.89	-1	92677..93132	+	151	184152729	-	LAR_0074	-	hypothetical protein
75	 40.79	0	93740..95281	+	513	184152730	-	LAR_0075	-	poly(glycerol-phosphate) alpha-glucosyltransferase
76	 39.59	0	95283..96785	+	500	184152731	-	LAR_0076	-	poly(glycerol-phosphate) alpha-glucosyltransferase
77	 41.86	0	96897..98714	+	605	184152732	-	LAR_0077	-	hypothetical protein
78	 39.10	0	98898..100580	+	560	184152733	-	LAR_0078	-	alpha-glucosidase
79	 42.42	+1	100598..101983	+	461	184152734	-	LAR_0079	-	sugar transport protein
80	 43.65	+1	102061..105231	-	1056	184152735	-	LAR_0080	-	carbamoylphosphate synthase large subunit
81	 43.34	+1	105224..106312	-	362	184152736	-	LAR_0081	-	carbamoylphosphate synthase small subunit
82	 42.93	+1	106694..107923	-	409	184152737	-	LAR_0082	-	sugar transport protein
83	 42.73	+1	108227..109237	-	336	184152738	-	LAR_0083	-	transcription regulator
84	 45.49	+1	109376..110782	-	468	184152739	-	LAR_0084	-	RNA methyltransferase
85	 38.05	0	111038..111610	+	190	184152740	-	LAR_0085	-	hypothetical protein
86	 41.81	0	111610..112860	+	416	184152741	-	LAR_0086	-	hypothetical protein
87	 44.12	+1	112863..113789	+	308	184152742	-	LAR_0087	-	putative thiamin biosynthesis lipoprotein
88	 42.88	+1	114287..115669	+	460	184152743	-	LAR_0088	-	reverse transcriptase/maturase family protein
89	 39.09	0	115934..117757	+	607	184152744	-	LAR_0089	-	hypothetical protein
90	 40.13	0	118614..120584	+	656	184152745	-	LAR_0090	-	hypothetical protein
91	 41.44	0	121348..122655	+	435	184152746	-	LAR_0091	-	seryl-tRNA synthase
92	 38.25	0	122924..124387	+	487	184152747	-	LAR_0092	-	glutamine ABC transporter substrate binding and permease components
93	 41.67	0	124389..125132	+	247	184152748	-	LAR_0093	-	glutamine ABC transporter ATP-binding component
94	 39.11	0	125436..126785	+	449	184152749	-	LAR_0094	-	amino acid transport protein
95	 39.27	0	127736..128947	+	403	184152750	-	LAR_0095	-	nucleoside transport protein
96	 40.81	0	129028..129936	+	302	184152751	-	LAR_0096	-	inosine-uridine preferring nucleoside hydrolase
97	 39.89	0	130039..130923	+	294	184152752	-	LAR_0097	-	3-hydroxyacyl-CoA dehydrogenase
98	 40.63	0	131101..131826	+	241	184152753	-	LAR_0098	-	glucose-inhibited division protein B
99	 39.42	0	131844..132812	+	322	184152754	-	LAR_0099	-	chromosome partitioning protein ParB
100	 39.43	0	132825..133595	+	256	184152755	-	LAR_0100	-	chromosome partitioning protein ParA
101	 42.03	0	133582..134466	+	294	184152756	-	LAR_0101	-	chromosome partitioning protein ParB
102	 38.89	0	134480..134677	+	65	184152757	-	LAR_0102	-	hypothetical protein
103	 41.71	0	134761..135858	+	365	184152758	-	LAR_0103	-	GTP-binding protein
104	 39.82	0	135891..136661	+	256	184152759	-	LAR_0104	-	hypothetical protein
105	 38.67	0	136874..137548	+	224	184152760	-	LAR_0105	-	deoxyribose-phosphate aldolase
106	 41.21	0	137601..138794	+	397	184152761	-	LAR_0106	-	phosphopentomutase
107	 40.49	0	138823..140121	+	432	184152762	-	LAR_0107	-	pyrimidine nucleoside phosphorylase
108	 39.52	0	140142..140852	+	236	184152763	-	LAR_0108	-	purine nucleoside phosphorylase
109	 37.62	0	140962..141894	+	310	184152764	-	LAR_0109	-	transcriptional regulator
110	 44.27	+1	141978..143120	+	380	184152765	-	LAR_0110	-	inosine-5-monophosphate dehydrogenase
111	 37.54	0	143301..143990	+	229	184152766	-	LAR_0111	-	two-component response regulator
112	 39.53	0	144022..145167	+	381	184152767	-	LAR_0112	-	two-component system histidine kinase
113	 38.39	0	145303..146211	+	302	184152768	-	LAR_0113	-	branched-chain amino acid transport protein
114	 35.65	-1	146214..146558	+	114	184152769	-	LAR_0114	-	hypothetical protein
115	 38.80	0	146654..147385	+	243	184152770	-	LAR_0115	-	transcription regulator
116	 35.71	-1	147360..147527	+	55	184152771	-	LAR_0116	-	hypothetical protein
117	 41.18	0	147872..148801	+	309	184152772	-	LAR_0117	-	aspartate carbamoyltransferase
118	 41.84	0	148815..150107	+	430	184152773	-	LAR_0118	-	dihydroorotase
119	 43.15	+1	150107..151033	+	308	184152774	-	LAR_0119	-	dihydroorotate dehydrogenase
120	 41.80	0	151030..151761	+	243	184152775	-	LAR_0120	-	orotidine-5'-phosphate decarboxylase
121	 42.21	0	151758..152399	+	213	184152776	-	LAR_0121	-	orotate phosphoribosyltransferase
122	 36.52	0	152471..153130	-	219	184152777	-	LAR_0122	-	hypothetical protein
123	 39.12	0	153255..154430	-	391	184152778	-	LAR_0123	-	cyclopropane-fatty-acyl-phospholipid synthase
124	 36.26	0	154602..155627	+	341	184152779	-	LAR_0124	-	hypothetical protein
125	 40.79	0	155804..157465	+	553	184152780	-	LAR_0125	-	formyltetrahydrofolate synthase
126	 43.69	+1	157659..159338	+	559	184152781	-	LAR_0126	-	acetolactate synthase
127	 39.75	0	159355..160071	+	238	184152782	-	LAR_0127	-	alpha-acetolactate decarboxylase
128	 43.00	+1	160256..160741	+	161	184152783	-	LAR_0128	-	phosphoribosylaminoimidazole carboxylase I
129	 41.42	0	160734..161858	+	374	184152784	-	LAR_0129	-	phosphoribosylaminoimidazole carboxylase II
130	 40.82	0	161930..163225	+	431	184152785	-	LAR_0130	-	adenylosuccinate lyase
131	 41.39	0	163449..164168	+	239	184152786	-	LAR_0131	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
132	 39.36	0	164169..164417	+	82	184152787	-	LAR_0132	-	phosphoribosylformylglycinamidine synthase PurS protein
133	 41.56	0	164418..165098	+	226	184152788	-	LAR_0133	-	phosphoribosylformylglycinamidine synthase I
134	 43.52	+1	165102..167330	+	742	184152789	-	LAR_0134	-	phosphoribosylformylglycinamidine synthase II
135	 41.79	0	167306..168760	+	484	184152790	-	LAR_0135	-	phosphoribosylpyrophosphate amidotransferase
136	 43.83	+1	168765..169802	+	345	184152791	-	LAR_0136	-	phosphoribosylaminoimidazole synthase
137	 42.06	0	169812..170384	+	190	184152792	-	LAR_0137	-	phosphoribosylglycinamide formyltransferase
138	 42.04	0	170388..171926	+	512	184152793	-	LAR_0138	-	phosphoribosylaminoimidazolecarboxamide/ formyltransferase; IMP cyclohydrolase
139	 42.94	+1	171942..173201	+	419	184152794	-	LAR_0139	-	phosphoribosylamine-glycine ligase
140	 40.90	0	173297..173983	+	228	184152795	-	LAR_0140	-	phosphoglycerate mutase
141	 39.24	0	174151..175200	+	349	184152796	-	LAR_0141	-	hypothetical protein
142	 39.67	0	175541..176803	+	420	184152797	-	LAR_0142	-	tyrosyl-tRNA synthase
143	 35.45	-1	182783..182971	+	62	184152798	-	LAR_0143	-	hypothetical protein
144	 39.22	0	182961..183317	+	118	184152799	-	LAR_0144	-	transposase
145	 40.00	0	183384..184913	+	509	184152800	-	LAR_0145	-	putative transposase
146	 42.00	0	186346..187314	-	322	184152801	-	LAR_0146	-	transposase
147	 44.77	+1	187514..188230	+	238	184152802	-	LAR_0147	-	hypothetical protein
148	 45.54	+1	188332..189765	+	477	184152803	-	LAR_0148	-	nicotinate phosphoribosyltransferase
149	 41.76	0	189781..190326	+	181	184152804	-	LAR_0149	-	pyrazinamidase/nicotinamidase
150	 39.54	0	190773..191771	+	332	184152805	-	LAR_0150	-	hypothetical protein
151	 37.92	0	191791..193143	+	450	184152806	-	LAR_0151	-	putative purine-cytosine permease
152	 37.16	0	193149..194036	+	295	184152807	-	LAR_0152	-	putative sugar kinase
153	 31.71	-2	194164..194409	+	81	184152808	-	LAR_0153	-	transcription regulator
154	 40.89	0	194828..196150	+	440	184152809	-	LAR_0154	-	putative transport protein
155	 40.89	0	196309..197049	-	246	184152810	-	LAR_0155	-	hypothetical protein
156	 37.72	0	197157..197384	+	75	184152811	-	LAR_0156	-	hypothetical protein
157	 38.10	0	197463..198113	+	216	184152812	-	LAR_0157	-	hypothetical protein
158	 39.74	0	198179..198412	-	77	184152813	-	LAR_0158	-	hypothetical protein
159	 42.21	0	198555..199973	-	472	184152814	-	LAR_0159	-	Na-H antiporter
160	 40.88	0	201951..202493	-	180	184152815	-	LAR_0160	-	hypothetical protein
161	 33.83	-1	202505..202906	-	133	184152816	-	LAR_0161	-	hypothetical protein
162	 40.86	0	203038..203808	+	256	184152817	-	LAR_0162	-	triosephosphate isomerase
39.15	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.