IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1034	 41.67	0	1190771..1191790	-	339	184153689	-	LAR_1034	-	lactose operon repressor
1035	 35.00	-1	1191959..1192438	+	159	184153690	-	LAR_1035	-	hypothetical protein
1036	 42.81	+1	1192522..1193904	-	460	184153691	-	LAR_1036	-	reverse transcriptase/maturase family protein
1037	 43.36	+1	1194400..1195227	-	275	184153692	-	LAR_1037	-	exodeoxyribonuclease
1038	 41.96	0	1195230..1195565	-	111	184153693	-	LAR_1038	-	hypothetical protein
1039	 38.03	0	1195703..1195936	+	77	184153694	-	LAR_1039	-	hypothetical protein
1040	 36.17	0	1196399..1196857	-	152	184153695	-	LAR_1040	-	transposase
1041	 42.33	0	1198095..1199294	-	399	184153696	-	LAR_1041	-	hypothetical protein
1042	 36.83	0	1199284..1199655	-	123	184153697	-	LAR_1042	-	hypothetical protein
1043	 43.24	+1	1199993..1201153	-	386	184153698	-	LAR_1043	-	hypothetical protein
1044	 36.23	0	1201120..1201671	-	183	184153699	-	LAR_1044	-	hypothetical protein
1045	 34.88	-1	1201710..1201838	-	42	184153700	-	LAR_1045	-	hypothetical protein
1046	 37.92	0	1201822..1202235	-	137	184153701	-	LAR_1046	-	hypothetical protein
1047	 41.04	0	1202238..1203353	-	371	184153702	-	LAR_1047	-	hypothetical protein
1048	 42.15	0	1203350..1204495	-	381	184153703	-	LAR_1048	-	hypothetical protein
1049	 35.19	-1	1204508..1204777	-	89	184153704	-	LAR_1049	-	hypothetical protein
1050	 36.21	0	1204820..1205062	-	80	184153705	-	LAR_1050	-	hypothetical protein
1051	 40.10	0	1205055..1209134	-	1359	184153706	-	LAR_1051	-	hypothetical protein
1052	 38.28	0	1209082..1210839	-	585	184153707	-	LAR_1052	-	hypothetical protein
1053	 34.40	-1	1210841..1211686	-	281	184153708	-	LAR_1053	-	hypothetical protein
1054	 37.03	0	1211701..1215540	-	1279	184153709	-	LAR_1054	-	phage minor tail protein
1055	 34.34	-1	1215757..1216155	-	132	184153710	-	LAR_1055	-	hypothetical protein
1056	 40.23	0	1216205..1216915	-	236	184153711	-	LAR_1056	-	phage major tail protein
1057	 41.78	0	1217300..1217725	-	141	184153712	-	LAR_1057	-	hypothetical protein
1058	 38.48	0	1218037..1218405	-	122	184153713	-	LAR_1058	-	phage DNA packaging protein
1059	 39.66	0	1218425..1219609	-	394	184153714	-	LAR_1059	-	phage major head protein
1060	 39.18	0	1219590..1220324	-	244	184153715	-	LAR_1060	-	phage Clp-protease
1061	 40.13	0	1220308..1221498	-	396	184153716	-	LAR_1061	-	phage portal protein
1062	 37.14	0	1221685..1223574	-	629	184153717	-	LAR_1062	-	phage terminase large subunit
1063	 36.07	0	1223810..1224247	+	145	184153718	-	LAR_1063	-	hypothetical protein
1064	 35.23	-1	1224270..1224743	-	157	184153719	-	LAR_1064	-	hypothetical protein
1065	 36.50	0	1224888..1225424	-	178	184153720	-	LAR_1065	-	hypothetical protein
1066	 37.22	0	1225492..1225671	-	59	184153721	-	LAR_1066	-	hypothetical protein
1067	 36.17	0	1226331..1226789	-	152	184153722	-	LAR_1067	-	transposase
1068	 32.16	-2	1227062..1227913	-	283	184153723	-	LAR_1068	-	hypothetical protein
1069	 41.74	0	1229520..1229840	-	106	184153724	-	LAR_1069	-	hypothetical protein
1070	 39.15	0	1230099..1230287	-	62	184153725	-	LAR_1070	-	hypothetical protein
1071	 35.66	-1	1230287..1230673	-	128	184153726	-	LAR_1071	-	hypothetical protein
1072	 41.94	0	1231463..1231741	-	92	184153727	-	LAR_1072	-	hypothetical protein
1073	 37.85	0	1232507..1233391	-	294	184153728	-	LAR_1073	-	phage replication protein
1074	 41.58	0	1233369..1234265	-	298	184153729	-	LAR_1074	-	hypothetical protein
1075	 38.89	0	1234177..1235166	-	329	184153730	-	LAR_1075	-	hypothetical protein
1076	 35.11	-1	1235663..1236169	+	168	184153731	-	LAR_1076	-	hypothetical protein
1077	 41.47	0	1236739..1237512	-	257	184153732	-	LAR_1077	-	putative phage antirepressor
1078	 32.84	-1	1237561..1237764	-	67	184153733	-	LAR_1078	-	hypothetical protein
1079	 39.04	0	1237943..1238380	+	145	184153734	-	LAR_1079	-	hypothetical protein
1080	 37.25	0	1238962..1239471	+	169	184153735	-	LAR_1080	-	hypothetical protein
1081	 35.63	-1	1239954..1241084	+	376	184153736	-	LAR_1081	-	phage integrase
1082	 45.83	+2	1241198..1241557	-	119	184153737	-	LAR_1082	-	50S ribosomal protein L19
1083	 43.26	+1	1241680..1243110	-	476	184153738	-	LAR_1083	-	amino acid transport protein
1084	 41.90	0	1243121..1243879	-	252	184153739	-	LAR_1084	-	tRNA (guanine-N1)-methyltransferase
1085	 38.26	0	1243879..1244385	-	168	184153740	-	LAR_1085	-	16S rRNA processing protein RimM
1086	 43.68	+1	1244440..1244700	-	86	184153741	-	LAR_1086	-	hypothetical protein
1087	 43.48	+1	1244713..1244988	-	91	184153742	-	LAR_1087	-	30S ribosomal protein S16
1088	 42.25	0	1245087..1246532	-	481	184153743	-	LAR_1088	-	signal recognition particle protein
1089	 35.96	0	1246534..1246875	-	113	184153744	-	LAR_1089	-	hypothetical protein
1090	 44.53	+1	1246890..1248416	-	508	184153745	-	LAR_1090	-	signal recognition particle receptor
1091	 42.37	0	1248439..1252002	-	1187	184153746	-	LAR_1091	-	cell division protein
1092	 38.60	0	1252019..1252720	-	233	184153747	-	LAR_1092	-	ribonuclease III
1093	 33.33	-1	1252897..1253151	-	84	184153748	-	LAR_1093	-	acyl carrier protein
1094	 41.86	0	1253188..1254219	-	343	184153749	-	LAR_1094	-	fatty acid/phospholipid synthesis protein PlsX
1095	 43.85	+1	1254237..1256309	-	690	184153750	-	LAR_1095	-	ATP-dependent DNA helicase RecG
1096	 41.81	0	1256376..1258085	-	569	184153751	-	LAR_1096	-	hypothetical protein
1097	 40.77	0	1258111..1258473	-	120	184153752	-	LAR_1097	-	hypothetical protein
1098	 42.47	+1	1258668..1258853	-	61	184153753	-	LAR_1098	-	50S ribosomal protein L28
1099	 39.17	0	1259003..1259653	-	216	184153754	-	LAR_1099	-	hypothetical protein
1100	 40.06	0	1259739..1260392	-	217	184153755	-	LAR_1100	-	ribulose-phosphate 3-epimerase
1101	 40.97	0	1260403..1261293	-	296	184153756	-	LAR_1101	-	hypothetical protein
1102	 40.26	0	1261306..1263210	-	634	184153757	-	LAR_1102	-	protein kinase
1103	 41.30	0	1263214..1263954	-	246	184153758	-	LAR_1103	-	protein kinase
1104	 41.78	0	1263962..1265311	-	449	184153759	-	LAR_1104	-	rRNA methylase
1105	 40.99	0	1265301..1266254	-	317	184153760	-	LAR_1105	-	methionyl-tRNA formyltransferase
1106	 42.63	+1	1266272..1268701	-	809	184153761	-	LAR_1106	-	primosomal protein N'
1107	 43.86	+1	1268702..1269907	-	401	184153762	-	LAR_1107	-	pantothenate metabolism flavoprotein
1108	 36.99	0	1270018..1270236	-	72	184153763	-	LAR_1108	-	DNA-directed RNA polymerase omega subunit
1109	 37.52	0	1270233..1270853	-	206	184153764	-	LAR_1109	-	guanylate kinase
1110	 39.70	0	1271620..1273299	-	559	184153765	-	LAR_1110	-	DNA repair protein RecN
1111	 40.40	0	1273315..1273767	-	150	184153766	-	LAR_1111	-	arginine catabolic regulator
1112	 41.73	0	1273786..1274607	-	273	184153767	-	LAR_1112	-	hemolysin
1113	 43.76	+1	1274619..1275491	-	290	184153768	-	LAR_1113	-	geranyltranstransferase
1114	 40.07	0	1275510..1275791	-	93	184153769	-	LAR_1114	-	exodeoxyribonuclease VII small subunit
1115	 39.09	0	1275793..1277130	-	445	184153770	-	LAR_1115	-	exodeoxyribonuclease VII large subunit
1116	 39.72	0	1277123..1277983	-	286	184153771	-	LAR_1116	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
1117	 37.89	0	1278112..1278528	-	138	184153772	-	LAR_1117	-	transcription termination factor
1118	 38.13	0	1278530..1278967	-	145	184153773	-	LAR_1118	-	hypothetical protein
1119	 38.96	0	1279057..1279731	-	224	184153774	-	LAR_1119	-	hypothetical protein
1120	 40.85	0	1279733..1280809	-	358	184153775	-	LAR_1120	-	Xaa-Pro dipeptidase
1121	 39.96	0	1280822..1281304	-	160	184153776	-	LAR_1121	-	hypothetical protein
1122	 48.58	+2	1281655..1281936	-	93	184153777	-	LAR_1122	-	50S ribosomal protein L27
1123	 37.35	0	1281962..1282285	-	107	184153778	-	LAR_1123	-	hypothetical protein
1124	 41.75	0	1282301..1282609	-	102	184153779	-	LAR_1124	-	50S ribosomal protein L21
1125	 35.70	-1	1282824..1283456	-	210	184153780	-	LAR_1125	-	transcription regulator
1126	 33.33	-1	1283906..1284061	+	51	184153781	-	LAR_1126	-	hypothetical protein
1127	 34.52	-1	1284125..1284631	-	168	184153782	-	LAR_1127	-	hypothetical protein
1128	 38.43	0	1284661..1285719	-	352	184153783	-	LAR_1128	-	hypothetical protein
1129	 36.13	0	1285679..1286572	-	297	184153784	-	LAR_1129	-	hypothetical protein
1130	 35.44	-1	1286895..1287227	-	110	184153785	-	LAR_1130	-	hypothetical protein
1131	 40.50	0	1287212..1287769	-	185	184153786	-	LAR_1131	-	peptide methionine sulfoxide reductase
1132	 35.45	-1	1287756..1288607	-	283	184153787	-	LAR_1132	-	lipoprotein
1133	 39.76	0	1289291..1290472	-	393	184153788	-	LAR_1133	-	aromatic amino acid aminotransferas
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.