IslandPathversion 1.0

IslandPath Analysis: Lactobacillus reuteri JCM 1112



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.15 STD DEV: 3.24
Lactobacillus reuteri F275, complete genome - 1..2039414
1820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
967	 38.89	0	1103951..1104256	-	101	184153622	-	LAR_0967	-	hypothetical protein
968	 42.35	0	1104536..1105345	+	269	184153623	-	LAR_0968	-	hydroxyethylthiazole kinase
969	 41.76	0	1105338..1106156	+	272	184153624	-	LAR_0969	-	phosphomethylpyrimidine kinase
970	 39.04	0	1106153..1106800	+	215	184153625	-	LAR_0970	-	thiamine-phosphate pyrophosphorylase
971	 40.79	0	1106876..1108135	-	419	184153626	-	LAR_0971	-	hypothetical protein
972	 38.32	0	1108293..1110599	-	768	184153627	-	LAR_0972	-	alpha-glucosidase
973	 37.04	0	1110711..1111385	+	224	184153628	-	LAR_0973	-	hypothetical protein
974	 35.45	-1	1111558..1111746	+	62	184153629	-	LAR_0974	-	hypothetical protein
975	 39.22	0	1111736..1112092	+	118	184153630	-	LAR_0975	-	transposase
976	 40.00	0	1112159..1113688	+	509	184153631	-	LAR_0976	-	hypothetical protein
977	 32.93	-1	1119382..1119876	-	164	184153632	-	LAR_0977	-	hypothetical protein
978	 30.75	-2	1119901..1120908	-	335	184153633	-	LAR_0978	-	hypothetical protein
979	 39.31	0	1121491..1122327	-	278	184153634	-	LAR_0979	-	putative phosphoglycerate mutase
980	 39.65	0	1122626..1123195	+	189	184153635	-	LAR_0980	-	glucosamine-6-phosphate isomerase
981	 36.07	0	1123192..1123776	-	194	184153636	-	LAR_0981	-	hypothetical protein
982	 38.89	0	1123754..1124167	-	137	184153637	-	LAR_0982	-	hypothetical protein
983	 39.44	0	1124277..1126535	-	752	184153638	-	LAR_0983	-	translation initiation factor IF-2
984	 39.51	0	1126723..1127418	+	231	184153639	-	LAR_0984	-	hypothetical protein
985	 41.23	0	1128058..1131159	-	1033	184153640	-	LAR_0985	-	exonuclease SbcC
986	 42.18	0	1131161..1132279	-	372	184153641	-	LAR_0986	-	exonuclease SbcD
987	 42.94	+1	1132432..1132608	-	58	184153642	-	LAR_0987	-	hypothetical protein
988	 39.51	0	1132627..1133403	-	258	184153643	-	LAR_0988	-	exopolysaccharide biosynthesis protein
989	 37.61	0	1137050..1138942	-	630	184153644	-	LAR_0989	-	hypothetical protein
990	 28.16	-2	1139252..1140043	-	263	184153645	-	LAR_0990	-	hypothetical protein
991	 27.72	-2	1140064..1140864	-	266	184153646	-	LAR_0991	-	hypothetical protein
992	 43.09	+1	1141394..1142797	-	467	184153647	-	LAR_0992	-	amino acid transport protein
993	 43.73	+1	1142790..1143722	-	310	184153648	-	LAR_0993	-	homocysteine S-methyltransferase
994	 42.00	0	1144884..1145852	+	322	184153649	-	LAR_0994	-	transposase
995	 27.23	-2	1145854..1146771	-	305	184153650	-	LAR_0995	-	hypothetical protein
996	 32.15	-2	1146860..1147618	-	252	184153651	-	LAR_0996	-	putative transposase
997	 33.91	-1	1147623..1148834	-	403	184153652	-	LAR_0997	-	transposase
998	 29.95	-2	1149011..1150102	-	363	184153653	-	LAR_0998	-	hypothetical protein
999	 29.00	-2	1150087..1151700	-	537	184153654	-	LAR_0999	-	hypothetical protein
1000	 24.17	-2	1152942..1154960	-	672	184153655	-	LAR_1000	-	hypothetical protein
1001	 26.33	-2	1156371..1158041	-	556	184153656	-	LAR_1001	-	hypothetical protein
1002	 42.91	+1	1158054..1158899	-	281	184153657	-	LAR_1002	-	dTDP-4-dehydrorhamnose reductase
1003	 43.92	+1	1159046..1159933	-	295	184153658	-	LAR_1003	-	dTDP-glucose 4,6-dehydratase
1004	 45.41	+1	1160231..1161232	-	333	184153659	-	LAR_1004	-	transcription regulator
1005	 41.10	0	1161629..1162027	-	132	184153660	-	LAR_1005	-	hypothetical protein
1006	 42.29	0	1162133..1162657	-	174	184153661	-	LAR_1006	-	hypothetical protein
1007	 37.24	0	1162792..1163967	-	391	184153662	-	LAR_1007	-	transposase
1008	 33.33	-1	1163967..1164374	-	135	184153663	-	LAR_1008	-	transposase
1009	 47.79	+2	1164904..1165491	+	195	184153664	-	LAR_1009	-	hypothetical protein
1010	 37.97	0	1165501..1165737	+	78	184153665	-	LAR_1010	-	hypothetical protein
1011	 40.74	0	1165779..1166291	-	170	184153666	-	LAR_1011	-	hypothetical protein
1012	 49.37	+2	1166338..1167840	-	500	184153667	-	LAR_1012	-	glycerol kinase
1013	 45.70	+2	1167975..1168160	-	61	184153668	-	LAR_1013	-	4-oxalocrotonate tautomerase
1014	 43.44	+1	1168243..1170072	-	609	184153669	-	LAR_1014	-	hypothetical protein
1015	 46.65	+2	1170211..1171614	+	467	184153670	-	LAR_1015	-	dipeptidase
1016	 35.85	-1	1171766..1172479	+	237	184153671	-	LAR_1016	-	putative transposase
1017	 41.67	0	1172476..1173327	+	283	184153672	-	LAR_1017	-	putative transposase
1018	 43.41	+1	1173865..1175532	-	555	184153673	-	LAR_1018	-	thioredoxin reductase
1019	 42.73	+1	1175546..1176109	-	187	184153674	-	LAR_1019	-	alkyl hydroperoxide reductase
1020	 47.73	+2	1176210..1177091	-	293	184153675	-	LAR_1020	-	L-serine dehydratase alpha subunit
1021	 44.34	+1	1177103..1177765	-	220	184153676	-	LAR_1021	-	L-serine dehydratase beta subunit
1022	 44.74	+1	1177837..1178064	-	75	184153677	-	LAR_1022	-	hypothetical protein
1023	 39.78	0	1178064..1178528	-	154	184153678	-	LAR_1023	-	hypothetical protein
1024	 43.33	+1	1178897..1179166	-	89	184153679	-	LAR_1024	-	30S ribosomal protein S14
1025	 43.90	+1	1179312..1180163	-	283	184153680	-	LAR_1025	-	hypothetical protein
1026	 44.58	+1	1180309..1181544	+	411	184153681	-	LAR_1026	-	multidrug transport protein
1027	 43.30	+1	1181565..1182266	+	233	184153682	-	LAR_1027	-	menaquinone biosynthesis methyltransferase
1028	 40.09	0	1182691..1183830	+	379	184153683	-	LAR_1028	-	methionine synthase
1029	 39.92	0	1183848..1184591	+	247	184153684	-	LAR_1029	-	hypothetical protein
1030	 37.44	0	1184653..1185552	-	299	184153685	-	LAR_1030	-	hypothetical protein
1031	 39.35	0	1185633..1186613	+	326	184153686	-	LAR_1031	-	polyprenyl synthase
1032	 41.01	0	1186660..1188678	-	672	184153687	-	LAR_1032	-	beta-galactosidase
1033	 40.35	0	1188688..1190610	-	640	184153688	-	LAR_1033	-	lactose transport protein
1034	 41.67	0	1190771..1191790	-	339	184153689	-	LAR_1034	-	lactose operon repressor
1035	 35.00	-1	1191959..1192438	+	159	184153690	-	LAR_1035	-	hypothetical protein
1036	 42.81	+1	1192522..1193904	-	460	184153691	-	LAR_1036	-	reverse transcriptase/maturase family protein
1037	 43.36	+1	1194400..1195227	-	275	184153692	-	LAR_1037	-	exodeoxyribonuclease
1038	 41.96	0	1195230..1195565	-	111	184153693	-	LAR_1038	-	hypothetical protein
1039	 38.03	0	1195703..1195936	+	77	184153694	-	LAR_1039	-	hypothetical protein
1040	 36.17	0	1196399..1196857	-	152	184153695	-	LAR_1040	-	transposase
1041	 42.33	0	1198095..1199294	-	399	184153696	-	LAR_1041	-	hypothetical protein
1042	 36.83	0	1199284..1199655	-	123	184153697	-	LAR_1042	-	hypothetical protein
1043	 43.24	+1	1199993..1201153	-	386	184153698	-	LAR_1043	-	hypothetical protein
1044	 36.23	0	1201120..1201671	-	183	184153699	-	LAR_1044	-	hypothetical protein
1045	 34.88	-1	1201710..1201838	-	42	184153700	-	LAR_1045	-	hypothetical protein
1046	 37.92	0	1201822..1202235	-	137	184153701	-	LAR_1046	-	hypothetical protein
1047	 41.04	0	1202238..1203353	-	371	184153702	-	LAR_1047	-	hypothetical protein
1048	 42.15	0	1203350..1204495	-	381	184153703	-	LAR_1048	-	hypothetical protein
1049	 35.19	-1	1204508..1204777	-	89	184153704	-	LAR_1049	-	hypothetical protein
1050	 36.21	0	1204820..1205062	-	80	184153705	-	LAR_1050	-	hypothetical protein
1051	 40.10	0	1205055..1209134	-	1359	184153706	-	LAR_1051	-	hypothetical protein
1052	 38.28	0	1209082..1210839	-	585	184153707	-	LAR_1052	-	hypothetical protein
1053	 34.40	-1	1210841..1211686	-	281	184153708	-	LAR_1053	-	hypothetical protein
1054	 37.03	0	1211701..1215540	-	1279	184153709	-	LAR_1054	-	phage minor tail protein
1055	 34.34	-1	1215757..1216155	-	132	184153710	-	LAR_1055	-	hypothetical protein
1056	 40.23	0	1216205..1216915	-	236	184153711	-	LAR_1056	-	phage major tail protein
1057	 41.78	0	1217300..1217725	-	141	184153712	-	LAR_1057	-	hypothetical protein
1058	 38.48	0	1218037..1218405	-	122	184153713	-	LAR_1058	-	phage DNA packaging protein
1059	 39.66	0	1218425..1219609	-	394	184153714	-	LAR_1059	-	phage major head protein
1060	 39.18	0	1219590..1220324	-	244	184153715	-	LAR_1060	-	phage Clp-protease
1061	 40.13	0	1220308..1221498	-	396	184153716	-	LAR_1061	-	phage portal protein
1062	 37.14	0	1221685..1223574	-	629	184153717	-	LAR_1062	-	phage terminase large subunit
1063	 36.07	0	1223810..1224247	+	145	184153718	-	LAR_1063	-	hypothetical protein
1064	 35.23	-1	1224270..1224743	-	157	184153719	-	LAR_1064	-	hypothetical protein
1065	 36.50	0	1224888..1225424	-	178	184153720	-	LAR_1065	-	hypothetical protein
1066	 37.22	0	1225492..1225671	-	59	184153721	-	LAR_1066	-	hypothetical protein
39.15	MEAN

3.24	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.