IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
49	 35.84	0	47702..48460	+	252	125622931	-	llmg_0050	-	putative transposase helper protein for IS712A
50	 29.05	-1	48562..48888	+	108	125622932	ps105	llmg_0051	-	hypothetical protein
51	 31.88	-1	49396..49533	+	45	125622933	ps104	llmg_0052	-	hypothetical protein
52	 35.15	0	49622..49786	+	54	125622934	ps103	llmg_0053	-	hypothetical protein
53	 33.66	0	49908..50213	+	101	125622935	ps102	llmg_0054	-	hypothetical protein
54	 36.71	0	50463..51647	+	394	125622936	ps101	llmg_0055	-	phage integrase
55	 32.44	0	52156..52938	-	260	125622937	-	llmg_0056	-	hypothetical protein
56	 32.24	-1	53631..53996	+	121	125622938	-	llmg_0057	-	hypothetical protein
57	 31.50	-1	54401..54892	+	163	125622939	-	llmg_0059	-	hypothetical protein
58	 28.93	-1	55405..55563	+	52	125622940	-	llmg_0060	-	hypothetical protein
59	 30.60	-1	55905..56453	+	182	125622941	-	llmg_0061	-	putative acetyltransferase
60	 35.29	0	56574..56777	+	67	125622942	-	llmg_0062	-	hypothetical protein
61	 37.71	0	56870..58492	-	540	125622943	-	llmg_0063	-	putative sulphate transporter
62	 39.12	0	58702..59877	-	391	125622944	tnp905	llmg_0064	-	transposase for insertion sequence element IS905A
63	 34.29	0	60023..60544	+	173	125622945	-	llmg_0065	-	GNAT family acetyltransferase
64	 38.10	0	60873..62048	+	391	125622946	araT	llmg_0066	-	aromatic amino acid aminotransferase
65	 32.80	0	62146..62901	+	251	125622947	recO	llmg_0067	-	DNA repair protein RecO
66	 31.63	-1	63015..63896	+	293	125622948	-	llmg_0069	-	HTH-type transcriptional regulator
67	 33.74	0	64007..65242	+	411	125622949	-	llmg_0070	-	putative permease
68	 40.17	+1	65273..66691	-	472	125622950	pdhD	llmg_0071	-	dihydrolipoamide dehydrogenase
69	 41.05	+1	66910..68502	-	530	125622951	pdhC	llmg_0072	-	pyruvate dehydrogenase complex E2 component
70	 41.90	+1	68495..69475	-	326	125622952	pdhB	llmg_0073	-	pyruvate dehydrogenase E1 component beta subunit
71	 41.78	+1	69478..70602	-	374	125622953	pdhA	llmg_0074	-	pyruvate dehydrogenase E1 component alpha subunit
72	 40.82	+1	70691..71692	-	333	125622954	lplL	llmg_0075	-	lipoate-protein ligase
73	 33.92	0	71885..72739	-	284	125622955	-	llmg_0076	-	glycerophosphodiester phosphodiesterase
74	 35.79	0	72818..73468	-	216	125622956	-	llmg_0077	-	putative phosphohydrolase
75	 36.39	0	73518..73844	-	108	125622957	-	llmg_0078	-	hypothetical protein
76	 40.64	+1	73937..74962	-	341	125622958	trpS	llmg_0079	-	tryptophanyl-tRNA synthetase II
77	 39.73	+1	75461..75898	+	145	125622959	osmC	llmg_0080	-	osmotically inducible protein C
78	 34.78	0	76060..77373	+	437	125622960	-	llmg_0081	-	putative amino-acid permease
79	 26.50	-2	77433..77783	+	116	125622961	-	llmg_0082	-	hypothetical protein
80	 39.76	+1	77843..78838	-	331	125622962	plsX	llmg_0083	-	putative glycerol-3-phosphate acyltransferase PlsX
81	 37.88	0	78941..79753	-	270	125622963	-	llmg_0084	-	putative hydrolase
82	 39.07	0	80129..81766	-	545	125622964	-	llmg_0085	-	ABC transporter ATP-binding protein
83	 32.94	0	82266..82520	+	84	125622965	-	llmg_0086	-	hypothetical protein
84	 41.45	+1	82640..83464	-	274	125622966	-	llmg_0087	-	putative short-chain type dehydrogenase
85	 33.33	0	83680..84249	+	189	125622967	-	llmg_0088	-	hypothetical protein
86	 37.80	0	85125..85706	-	193	125622968	-	llmg_0089	-	putative HTH-type transcriptional regulator
87	 31.47	-1	85894..86376	-	160	125622969	-	llmg_0090	-	hypothetical protein
88	 40.12	+1	86633..87913	-	426	125622970	cysD	llmg_0091	-	O-acetylhomoserine sulfhydrylase
89	 39.69	+1	88166..88999	-	277	125622971	-	llmg_0092	-	putative short-chain type dehydrogenase
90	 36.32	0	89403..89870	+	155	125622972	-	llmg_0093	-	hypothetical protein
91	 34.85	0	89996..90193	+	65	125622973	-	llmg_0094	-	hypothetical protein
92	 36.88	0	90229..90849	+	206	125622974	-	llmg_0095	-	putative esterase
93	 40.17	+1	90917..92086	+	389	125622975	-	llmg_0096	-	putatve glyoxylase protein
94	 37.56	0	92097..92687	+	196	125622976	-	llmg_0097	-	putative flavoprotein oxygenase
95	 32.00	-1	92769..92918	-	49	125622977	rpmG	llmg_0098	-	50S ribosomal protein L33
96	 44.25	+2	92948..93121	-	57	125622978	rpmF	llmg_0099	-	50S ribosomal protein L32
97	 40.07	+1	93484..95265	+	593	125622979	cadA	llmg_0100	-	cation-transporting ATPase
98	 38.40	0	95452..96300	+	282	125622980	-	llmg_0101	-	hypothetical protein
99	 35.88	0	96310..97095	-	261	125622981	parA	llmg_0102	-	chromosome partitioning protein parA
100	 38.89	0	97150..98409	-	419	125622982	cshA	llmg_0103	-	recombination factor protein RarA
101	 36.46	0	98453..98995	-	180	125622983	-	llmg_0104	-	acetyltransferase
102	 36.11	0	99114..99581	+	155	125622984	-	llmg_0105	-	hypothetical protein
103	 37.97	0	99611..101164	+	517	125622985	-	llmg_0106	-	ABC transporter ATP-binding protein
104	 32.63	0	101239..101523	+	94	125622986	-	llmg_0107	-	hypothetical protein
105	 37.66	0	101605..102297	+	230	125622987	-	llmg_0108	-	S-adenosylmethionine-dependent methyltransferase
106	 39.02	0	102281..102772	+	163	125622988	-	llmg_0109	-	hypothetical protein
107	 40.78	+1	102785..103738	+	317	125622989	prmA	llmg_0110	-	ribosomal protein L11 methyltransferase
108	 38.38	0	103858..104610	+	250	125622990	-	llmg_0111	-	hypothetical protein
109	 37.51	0	104640..105596	+	318	125622991	-	llmg_0112	-	putative xylanase/chitin deacetylase
110	 39.09	0	105797..108019	+	740	125622992	relA	llmg_0113	-	GTP pyrophosphokinase
111	 36.11	0	108034..108969	-	311	125622993	-	llmg_0114	-	glycosyl transferase family protein
112	 35.09	0	109228..109683	+	151	125622994	dtd	llmg_0115	-	D-tyrosyl-tRNA deacylase
113	 35.02	0	109676..110680	+	334	125622995	-	llmg_0116	-	hypothetical protein
114	 32.53	0	110683..111306	+	207	125622996	-	llmg_0117	-	hypothetical protein
115	 42.49	+1	111440..112837	+	465	125622997	ctrA	llmg_0118	-	putative amino-acid transporter
116	 36.80	0	112986..113648	+	220	125622998	-	llmg_0119	-	putative acyltransferase
117	 32.95	0	113679..114197	-	172	125622999	rmaD	llmg_0120	-	MarR family transcriptional regulator
118	 37.80	0	114407..114697	+	96	125623000	-	llmg_0121	-	hypothetical protein
119	 38.71	0	114793..115554	+	253	125623001	tnp904	llmg_0122	-	transposase for insertion sequence element IS904A
120	 37.21	0	115603..116247	-	214	125623002	acpD	llmg_0123	-	AcpD protein
121	 38.99	0	116422..119019	+	865	125623003	secA	llmg_0124	-	preprotein translocase subunit SecA
122	 37.57	0	119149..120186	+	345	125623004	aroF	llmg_0125	-	phospho-2-dehydro-3-deoxyheptonate aldolase
123	 41.95	+1	120435..120701	+	88	125623005	ptsH	llmg_0126	-	phosphocarrier protein HPr
124	 40.91	+1	120704..122431	+	575	125623006	ptsI	llmg_0127	-	phosphoenolpyruvate-protein phosphotransferase
125	 33.00	0	123002..123301	-	99	125623007	-	llmg_0128	-	hypothetical protein
126	 35.42	0	123407..123694	+	95	125623008	-	llmg_0129	-	hypothetical protein
127	 36.40	0	123974..124918	-	314	125623009	-	llmg_0130	-	hypothetical protein
128	 40.46	+1	125070..126458	+	462	125623010	-	llmg_0131	-	hypothetical protein
129	 34.58	0	126644..126964	+	106	125623011	sugE	llmg_0132	-	small multidrug resistance protein
130	 36.08	0	127087..128250	+	387	125623012	blt	llmg_0133	-	multidrug resistance protein
131	 32.70	0	128554..129504	+	316	125623013	-	llmg_0134	-	bactoprenol glucosyl transferase
132	 32.61	0	129488..130723	+	411	125623014	-	llmg_0135	-	hypothetical protein
133	 30.27	-1	131117..131638	+	173	125623015	-	llmg_0136	-	putative sensor protein kinase
134	 29.40	-1	131705..133078	+	457	125623016	-	llmg_0137	-	permease
135	 38.76	0	134045..135241	+	398	125623017	argG	llmg_0138	-	argininosuccinate synthase
136	 35.58	0	135270..136649	+	459	125623018	argH	llmg_0139	-	argininosuccinate lyase
137	 40.05	+1	136666..137811	-	381	125623019	pmrB	llmg_0140	-	multidrug resistance efflux pump
138	 33.16	0	138054..138629	+	191	125623020	-	llmg_0141	-	putative transcriptional regulator
139	 34.75	0	138786..139139	+	117	125623021	rnpA	llmg_0142	-	ribonuclease P
140	 37.16	0	139136..139945	+	269	125623022	-	llmg_0143	-	preprotein translocase subunit
141	 38.69	0	140033..140947	+	304	125623023	-	llmg_0144	-	hypothetical protein
142	 45.93	+2	141079..141213	+	44	125623024	rpmH	llmg_0145	-	50S ribosomal protein L34
143	 35.31	0	141388..142299	+	303	125623025	-	llmg_0146	-	aryl-alcohol dehydrogenase
144	 35.25	0	142360..142620	+	86	125623026	-	llmg_0147	-	lambda repressor-like, DNA-binding
145	 34.83	0	142809..143009	+	66	125623027	-	llmg_0148	-	hypothetical protein
146	 32.75	0	143092..143772	+	226	125623028	-	llmg_0149	-	hypothetical protein
147	 36.70	0	144067..144333	+	88	125623029	-	llmg_0150	-	hypothetical protein
148	 40.74	+1	144333..144764	+	143	125623030	-	llmg_0151	-	putative Hollyday junction resolvase
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.