IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
908	 36.23	0	918439..918990	-	183	125623790	msrA	llmg_0951	-	MsrA protein
909	 35.68	0	919131..920066	+	311	125623791	pyrDA	llmg_0952	-	dihydroorotate dehydrogenase 1A
910	 33.33	0	920191..920898	+	235	125623792	-	llmg_0953	-	hypothetical protein
911	 34.81	0	920958..921227	+	89	125623793	-	llmg_0954	-	hypothetical protein
912	 43.46	+2	921340..922386	+	348	125623794	-	llmg_0955	-	alcohol dehydrogenase
913	 32.33	-1	922479..923477	-	332	125623795	-	llmg_0956	-	LacI family transcription regulator
914	 34.41	0	923672..924322	+	216	125623796	rpe2	llmg_0957	-	ribulose-phosphate 3-epimerase
915	 40.89	+1	924338..924787	+	149	125623797	rpiB	llmg_0958	-	ribose-5-phosphate isomerase B
916	 32.43	0	924840..925394	+	184	125623798	-	llmg_0959	-	beta-glucosidase
917	 34.37	0	925722..926204	+	160	125623799	-	llmg_0960	-	beta-glucosidase
918	 34.88	0	926354..927256	-	300	125623800	-	llmg_0961	-	sugar kinase and transcriptional regulator
919	 29.20	-1	927365..928525	+	386	125623801	-	llmg_0962	-	AraC family transcriptional regulator
920	 36.06	0	928743..930098	+	451	125623802	-	llmg_0963	-	PTS system, IIC component
921	 35.12	0	930251..931090	+	279	125623803	thyA	llmg_0964	-	thymidylate synthase
922	 38.12	0	931532..932221	+	229	125623804	-	llmg_0965	-	hypothetical protein
923	 36.24	0	932486..932932	+	148	125623805	rmaI	llmg_0966	-	MarR family transcriptional regulator
924	 37.34	0	932929..934302	+	457	125623806	-	llmg_0967	-	putative permease protein
925	 41.97	+1	934523..935275	+	250	125623807	-	llmg_0968	-	oxidoreductase
926	 38.21	0	935292..935660	+	122	125623808	-	llmg_0969	-	hypothetical protein
927	 34.92	0	935694..936008	+	104	125623809	-	llmg_0970	-	carboxymuconolactone decarboxylase family protein
928	 35.03	0	936021..936314	+	97	125623810	yphI	llmg_0971	-	hypothetical protein
929	 41.42	+1	936330..936737	+	135	125623811	-	llmg_0972	-	hypothetical protein
930	 32.37	-1	936865..937587	+	240	125623812	purC	llmg_0973	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
931	 36.70	0	937642..937908	+	88	125623813	purS	llmg_0974	-	phosphoribosylformylglycinamidine synthetase PurS
932	 38.47	0	937905..938585	+	226	125623814	purQ	llmg_0975	-	phosphoribosylformylglycinamidine synthase I
933	 40.59	+1	938802..941021	+	739	125623815	purL	llmg_0976	-	phosphoribosylformylglycinamidine synthase II
934	 44.51	+2	941006..942526	+	506	125623816	purF	llmg_0977	-	amidophosphoribosyltransferase
935	 32.15	-1	942840..943262	+	140	125623817	-	llmg_0978	-	hypothetical protein
936	 28.91	-1	943295..943678	-	127	125623818	-	llmg_0979	-	hypothetical protein
937	 31.46	-1	943687..944595	-	302	125623819	-	llmg_0980	-	hypothetical protein
938	 37.80	0	944625..944915	+	96	125623820	-	llmg_0981	-	hypothetical protein
939	 37.97	0	945825..946406	+	193	125623821	-	llmg_0983	-	hypothetical protein
940	 32.46	0	947275..947388	-	37	125623822	-	llmg_0984	-	hypothetical protein
941	 37.17	0	947599..948405	+	268	125623823	-	llmg_0985	-	putative secreted protein
942	 38.98	0	948593..951196	+	867	125623824	clpB	llmg_0986	-	ATP-dependent Clp protease
943	 40.66	+1	951380..952402	+	340	125623825	purM	llmg_0987	-	phosphoribosylaminoimidazole synthetase
944	 37.16	0	952431..952979	+	182	125623826	purN	llmg_0988	-	phosphoribosylglycinamide formyltransferase
945	 35.09	0	953119..954765	+	548	125623827	-	llmg_0989	-	ABC transporter ATP binding and permease protein
946	 34.46	0	956132..956662	-	176	125623828	-	llmg_0991	-	AcrR family transcriptional regulator
947	 39.02	0	956790..957827	+	345	125623829	-	llmg_0992	-	putative nucleoside-diphosphate-sugar epimerases
948	 35.54	0	957962..958504	+	180	125623830	hprT	llmg_0993	-	HprT protein
949	 39.56	0	958681..960237	+	518	125623831	purH	llmg_0994	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
950	 37.66	0	960356..961048	+	230	125623832	-	llmg_0995	-	hydrolase, haloacid dehalogenase-like family protein
951	 34.93	0	962586..963212	-	208	125623833	-	llmg_0996	-	TetR family transcriptional regulator
952	 38.97	0	963606..964847	+	413	125623834	purD	llmg_0997	-	phosphoribosylamine--glycine ligase
953	 32.90	0	964919..965611	+	230	125623835	-	llmg_0998	-	putative hydrolase
954	 42.80	+1	965608..966093	+	161	125623836	purE	llmg_0999	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
955	 37.67	0	966149..967255	+	368	125623837	purK	llmg_1000	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
956	 31.73	-1	967411..968343	-	310	125623838	xylR	llmg_1001	-	xylose operon regulator
957	 38.94	0	968454..969149	+	231	125623839	xylA	llmg_1002	-	XylA protein
958	 37.59	0	969172..969852	-	226	125623840	tnp1216	llmg_1003	-	transposase for insertion sequence-like element IS1216
959	 33.19	0	969894..970571	+	225	125623841	-	llmg_1004	-	beta-glucosidase
960	 38.28	0	970613..971482	+	289	125623842	-	llmg_1005	-	sugar kinase and transcriptional regulator
961	 40.30	+1	971556..972431	+	291	125623843	scrK	llmg_1006	-	fructokinase
962	 22.45	-2	972415..972561	+	48	125623844	-	llmg_1007	-	hypothetical protein
963	 41.89	+1	972641..974182	+	513	125623845	guaA	llmg_1008	-	bifunctional GMP synthase/glutamine amidotransferase protein
964	 36.03	0	974516..975406	+	296	125623846	lplB	llmg_1009	-	sugar ABC transporter substrate binding protein
965	 35.65	0	975417..976280	+	287	125623847	lplC	llmg_1010	-	sugar ABC transporter permease
966	 37.26	0	976352..977548	+	398	125623848	lplA	llmg_1011	-	sugar ABC transporter substrate-binding protein
967	 36.82	0	977586..977987	+	133	125623849	-	llmg_1012	-	putative ABC transporter substrate-binding protein
968	 30.69	-1	978188..978376	+	62	125623850	-	llmg_1013	-	putative secreted protein
969	 34.84	0	978828..981218	+	796	125623851	-	llmg_1014	-	hypothetical protein
970	 37.68	0	981287..982666	-	459	125623852	ypbC	llmg_1015	-	hypothetical protein
971	 30.24	-1	982765..983670	-	301	125623853	-	llmg_1016	-	cationic transporter
972	 30.24	-1	983847..984266	+	139	125623854	rmaE	llmg_1017	-	MarR family transcriptional regulator
973	 36.67	0	986437..987216	-	259	125623855	-	llmg_1019	-	oxidoreductase, short-chain dehydrogenase/reductase family protein
974	 35.17	0	987245..987679	+	144	125623856	rmeB	llmg_1020	-	MerR family transcriptional regulator
975	 36.04	0	987722..988609	-	295	125623857	-	llmg_1021	-	hypothetical protein
976	 36.18	0	990101..990487	-	128	125623858	fur	llmg_1023	-	ferric uptake regulation protein
977	 38.55	0	990614..991303	+	229	125623859	-	llmg_1024	-	hypothetical protein
978	 35.24	0	991303..991983	+	226	125623860	-	llmg_1025	-	hypothetical protein
979	 32.26	-1	992059..992802	+	247	125623861	-	llmg_1026	-	putative methyltransferase
980	 32.38	0	992912..993331	+	139	125623862	rmaC	llmg_1027	-	MarR family transcriptional regulator
981	 34.27	0	993343..993981	+	212	125623863	-	llmg_1028	-	putative NAD(P)H nitroreductase
982	 33.33	0	993996..994355	+	119	125623864	-	llmg_1029	-	hypothetical protein
983	 37.13	0	994809..996179	+	456	125623865	trpE	llmg_1030	-	anthranilate synthase component I
984	 40.21	+1	996231..996812	+	193	125623866	trpG	llmg_1031	-	anthranilate synthase component II
985	 43.75	+2	996817..997824	+	335	125623867	trpD	llmg_1032	-	anthranilate phosphoribosyltransferase
986	 34.27	0	998610..998930	+	106	125623868	-	llmg_1034	-	hypothetical protein
987	 35.00	0	998956..999135	+	59	125623869	-	llmg_1035	-	hypothetical protein
988	 39.30	0	999434..999802	+	122	125623870	-	llmg_1037	-	putative lyase
989	 33.08	0	999809..1000603	+	264	125623871	trpC	llmg_1038	-	indole-3-glycerol-phosphate synthase
990	 35.88	0	1000593..1001651	+	352	125623872	trpF	llmg_1039	-	N-(5'-phosphoribosyl)-anthranilate isomerase
991	 36.82	0	1001641..1002213	+	190	125623873	-	llmg_1040	-	acetyltransferase
992	 41.87	+1	1002258..1003463	+	401	125623874	trpB	llmg_1041	-	tryptophan synthase subunit beta
993	 34.51	0	1003463..1004224	+	253	125623875	trpA	llmg_1042	-	tryptophan synthase subunit alpha
994	 37.99	0	1006599..1008509	+	636	125623876	bglP	llmg_1045	-	PTS system, beta-glucosides specific enzyme IIABC
995	 35.77	0	1008557..1009993	+	478	125623877	bglH	llmg_1046	-	beta-glucosidase
996	 36.88	0	1010159..1010779	+	206	125623878	busR	llmg_1047	-	transcriptional repressor BusR
997	 36.93	0	1010991..1012214	+	407	125623879	busAA	llmg_1048	-	glycine betaine/proline ABC transporter
998	 36.82	0	1012207..1013928	+	573	125623880	busAB	llmg_1049	-	glycine betaine-binding periplasmic protein precursor
999	 36.26	0	1014118..1014288	+	56	125623881	-	llmg_1050	-	hypothetical protein
1000	 35.76	0	1014345..1014920	-	191	125623882	-	llmg_1051	-	transcription regulator
1001	 36.78	0	1015186..1016259	+	357	125623883	-	llmg_1052	-	hypothetical protein
1002	 32.85	0	1016260..1016466	+	68	125623884	-	llmg_1053	-	hypothetical protein
1003	 38.86	0	1016490..1017032	+	180	125623885	-	llmg_1054	-	hypothetical protein
1004	 27.06	-2	1017062..1017364	+	100	125623886	-	llmg_1055	-	transcriptional regulator
1005	 35.13	0	1017646..1018590	+	314	125623887	-	llmg_1056	-	cation transporter
1006	 28.94	-1	1018644..1019075	+	143	125623888	-	llmg_1057	-	phosphate-starvation-inducible protein PsiE
1007	 33.66	0	1019146..1020066	-	306	125623889	coaA	llmg_1058	-	pantothenate kinase
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.