IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
845	 35.80	0	854545..854787	+	80	125623727	-	llmg_0883	-	hypothetical protein
846	 37.04	0	854784..856241	+	485	125623728	-	llmg_0884	-	hypothetical protein
847	 37.30	0	856402..857208	+	268	125623729	proB	llmg_0885	-	gamma-glutamyl kinase
848	 38.63	0	857316..858560	+	414	125623730	proA	llmg_0886	-	gamma-glutamyl phosphate reductase
849	 38.45	0	858798..859715	-	305	125623731	-	llmg_0887	-	cation transport protein
850	 31.00	-1	859705..860004	-	99	125623732	rarA	llmg_0888	-	ArsR family transcriptional regulator
851	 34.62	0	860109..860807	+	232	125623733	-	llmg_0889	-	hypothetical protein
852	 39.46	0	861083..861604	+	173	125623734	pyrR	llmg_0890	-	pyrimidine regulatory protein PyrR
853	 39.13	0	861704..862996	+	430	125623735	pyrP	llmg_0891	-	uracil permease (Uracil transporter)
854	 38.91	0	863245..864177	+	310	125623736	pyrB	llmg_0893	-	aspartate carbamoyltransferase catalytic subunit
855	 39.20	0	864265..865338	+	357	125623737	carA	llmg_0894	-	carbamoyl phosphate synthase small subunit
856	 33.70	0	865499..865771	-	90	125623738	-	llmg_0895	-	hypothetical protein
857	 40.30	+1	865869..866270	-	133	125623739	-	llmg_0896	-	hypothetical protein
858	 32.61	0	866339..867028	-	229	125623740	-	llmg_0897	-	putative secreted protein
859	 28.40	-2	867411..867572	+	53	125623741	-	llmg_0898	-	hypothetical protein
860	 31.35	-1	867654..867956	+	100	125623742	-	llmg_0899	-	hypothetical protein
861	 36.78	0	868074..868334	+	86	125623743	ymbI	llmg_0900	-	hypothetical protein
862	 36.07	0	868346..869185	+	279	125623744	tnp981	llmg_0901	-	transposase for insertion sequence element IS981H
863	 35.56	0	869928..870332	+	134	125623745	arsC	llmg_0902	-	arsenate reductase
864	 32.14	-1	870444..871280	+	278	125623746	-	llmg_0903	-	putative serine/threonine phosphatase
865	 39.80	+1	871373..872284	+	303	125623747	-	llmg_0904	-	immunogenic secreted protein precursor-like protein
866	 34.16	0	872521..872883	+	120	125623748	-	llmg_0905	-	hypothetical protein
867	 38.21	0	873207..873452	+	81	125623749	rpmE	llmg_0906	-	50S ribosomal protein L31 type B
868	 32.20	-1	873585..874115	+	176	125623750	-	llmg_0907	-	hypothetical protein
869	 38.82	0	874271..874963	+	230	125623751	llrA	llmg_0908	-	two-component system regulator llrA
870	 35.95	0	874950..876440	+	496	125623752	kinA	llmg_0909	-	sensor protein kinase kinA
871	 40.18	+1	876626..877867	+	413	125623753	amtB	llmg_0910	-	ammonium transporter AmtB
872	 35.67	0	877949..878290	+	113	125623754	glnB	llmg_0911	-	nitrogen regulatory protein P-II
873	 36.67	0	878459..879808	+	449	125623755	murD	llmg_0912	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
874	 36.50	0	880051..881124	+	357	125623756	murG	llmg_0913	-	N-acetylglucosaminyl transferase
875	 35.65	0	881125..882291	+	388	125623757	ftsQ	llmg_0914	-	cell division protein ftsQ
876	 40.79	+1	882441..883754	+	437	125623758	obgE	llmg_0915	-	GTPase ObgE
877	 32.75	0	883782..883952	+	56	125623759	-	llmg_0916	-	hypothetical protein
878	 31.67	-1	884001..884603	-	200	125623760	-	llmg_0917	-	hypothetical protein
879	 32.67	0	884971..885270	+	99	125623761	-	llmg_0918	-	hypothetical protein
880	 40.91	+1	886205..886996	+	263	125623762	-	llmg_0920	-	putative secreted protein
881	 37.29	0	887034..887792	+	252	125623763	-	llmg_0921	-	putative secreted protein
882	 43.39	+2	887830..888585	+	251	125623764	-	llmg_0922	-	putative secreted protein
883	 32.11	-1	893584..894645	+	353	125623765	-	llmg_0924	-	hypothetical protein
884	 33.97	0	894809..895120	+	103	125623766	-	llmg_0925	-	putative transcriptional regulator
885	 38.42	0	895195..896235	-	346	125623767	queA	llmg_0926	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
886	 36.52	0	896558..897529	+	323	125623768	-	llmg_0927	-	putative extracellular hydrolase
887	 35.17	0	897703..898410	+	235	125623769	nagB	llmg_0928	-	glucosamine-6-phosphate isomerase
888	 37.40	0	898471..899625	-	384	125623770	hmcM	llmg_0929	-	hydroxymethylglutaryl-CoA synthase
889	 38.59	0	899909..901069	+	386	125623771	thiL	llmg_0930	-	ThiL protein
890	 37.88	0	901117..902349	+	410	125623772	mvaA	llmg_0931	-	MvaA protein
891	 37.73	0	902434..902706	+	90	125623773	rpsP	llmg_0932	-	30S ribosomal protein S16
892	 37.50	0	902802..903041	+	79	125623774	-	llmg_0933	-	putative RNA binding protein
893	 35.53	0	903241..904197	+	318	125623775	hemH	llmg_0934	-	ferrochelatase
894	 36.17	0	904223..905068	+	281	125623776	-	llmg_0935	-	putative lysophospholipase
895	 33.72	0	905253..905768	+	171	125623777	rimM	llmg_0936	-	16S rRNA-processing protein
896	 38.76	0	905761..906516	+	251	125623778	trmD	llmg_0937	-	tRNA (guanine-N(1)-)-methyltransferase
897	 33.59	0	906642..907034	+	130	125623779	-	llmg_0938	-	hypothetical protein
898	 35.58	0	907051..907896	+	281	125623780	-	llmg_0939	-	hypothetical protein
899	 41.51	+1	908026..908808	+	260	125623781	dapB	llmg_0940	-	dihydrodipicolinate reductase
900	 35.17	0	908874..909416	+	180	125623782	-	llmg_0941	-	acetyltransferase
901	 35.90	0	909616..910824	+	402	125623783	papL	llmg_0942	-	tRNA CCA-pyrophosphorylase
902	 37.47	0	910947..912371	+	474	125623784	pepDB	llmg_0943	-	PepDB protein
903	 37.96	0	912482..913000	+	172	125623785	-	llmg_0944	-	hypothetical protein
904	 37.59	0	913106..914185	+	359	125623786	-	llmg_0945	-	putative glycerol dehydrogenase
905	 35.64	0	914269..915222	+	317	125623787	cmhR	llmg_0947	-	putative HTH-type transcriptional regulator cmhR
906	 34.94	0	915370..917241	+	623	125623788	-	llmg_0948	-	ABC transporter ATP-binding protein
907	 34.15	0	917454..918428	+	324	125623789	-	llmg_0950	-	putative oxidoreductase
908	 36.23	0	918439..918990	-	183	125623790	msrA	llmg_0951	-	MsrA protein
909	 35.68	0	919131..920066	+	311	125623791	pyrDA	llmg_0952	-	dihydroorotate dehydrogenase 1A
910	 33.33	0	920191..920898	+	235	125623792	-	llmg_0953	-	hypothetical protein
911	 34.81	0	920958..921227	+	89	125623793	-	llmg_0954	-	hypothetical protein
912	 43.46	+2	921340..922386	+	348	125623794	-	llmg_0955	-	alcohol dehydrogenase
913	 32.33	-1	922479..923477	-	332	125623795	-	llmg_0956	-	LacI family transcription regulator
914	 34.41	0	923672..924322	+	216	125623796	rpe2	llmg_0957	-	ribulose-phosphate 3-epimerase
915	 40.89	+1	924338..924787	+	149	125623797	rpiB	llmg_0958	-	ribose-5-phosphate isomerase B
916	 32.43	0	924840..925394	+	184	125623798	-	llmg_0959	-	beta-glucosidase
917	 34.37	0	925722..926204	+	160	125623799	-	llmg_0960	-	beta-glucosidase
918	 34.88	0	926354..927256	-	300	125623800	-	llmg_0961	-	sugar kinase and transcriptional regulator
919	 29.20	-1	927365..928525	+	386	125623801	-	llmg_0962	-	AraC family transcriptional regulator
920	 36.06	0	928743..930098	+	451	125623802	-	llmg_0963	-	PTS system, IIC component
921	 35.12	0	930251..931090	+	279	125623803	thyA	llmg_0964	-	thymidylate synthase
922	 38.12	0	931532..932221	+	229	125623804	-	llmg_0965	-	hypothetical protein
923	 36.24	0	932486..932932	+	148	125623805	rmaI	llmg_0966	-	MarR family transcriptional regulator
924	 37.34	0	932929..934302	+	457	125623806	-	llmg_0967	-	putative permease protein
925	 41.97	+1	934523..935275	+	250	125623807	-	llmg_0968	-	oxidoreductase
926	 38.21	0	935292..935660	+	122	125623808	-	llmg_0969	-	hypothetical protein
927	 34.92	0	935694..936008	+	104	125623809	-	llmg_0970	-	carboxymuconolactone decarboxylase family protein
928	 35.03	0	936021..936314	+	97	125623810	yphI	llmg_0971	-	hypothetical protein
929	 41.42	+1	936330..936737	+	135	125623811	-	llmg_0972	-	hypothetical protein
930	 32.37	-1	936865..937587	+	240	125623812	purC	llmg_0973	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
931	 36.70	0	937642..937908	+	88	125623813	purS	llmg_0974	-	phosphoribosylformylglycinamidine synthetase PurS
932	 38.47	0	937905..938585	+	226	125623814	purQ	llmg_0975	-	phosphoribosylformylglycinamidine synthase I
933	 40.59	+1	938802..941021	+	739	125623815	purL	llmg_0976	-	phosphoribosylformylglycinamidine synthase II
934	 44.51	+2	941006..942526	+	506	125623816	purF	llmg_0977	-	amidophosphoribosyltransferase
935	 32.15	-1	942840..943262	+	140	125623817	-	llmg_0978	-	hypothetical protein
936	 28.91	-1	943295..943678	-	127	125623818	-	llmg_0979	-	hypothetical protein
937	 31.46	-1	943687..944595	-	302	125623819	-	llmg_0980	-	hypothetical protein
938	 37.80	0	944625..944915	+	96	125623820	-	llmg_0981	-	hypothetical protein
939	 37.97	0	945825..946406	+	193	125623821	-	llmg_0983	-	hypothetical protein
940	 32.46	0	947275..947388	-	37	125623822	-	llmg_0984	-	hypothetical protein
941	 37.17	0	947599..948405	+	268	125623823	-	llmg_0985	-	putative secreted protein
942	 38.98	0	948593..951196	+	867	125623824	clpB	llmg_0986	-	ATP-dependent Clp protease
943	 40.66	+1	951380..952402	+	340	125623825	purM	llmg_0987	-	phosphoribosylaminoimidazole synthetase
944	 37.16	0	952431..952979	+	182	125623826	purN	llmg_0988	-	phosphoribosylglycinamide formyltransferase
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.